Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb045610 Zea mays HOM05D005195 ORTHO05D006088 2.9e-48 194.9 99 100.0
Zm00001eb374160 Zea mays HOM05D005195 ORTHO05D006088 3.3e-31 138.3 95 78.9
Os06g0192900 Oryza sativa ssp. japonica HOM05D005195 ORTHO05D006088 5.9e-25 117.5 96 67.7
Zm00001eb113020 Zea mays HOM05D013797 ORTHO05D006088 4.0e-21 104.8 60 93.3
Cpa.g.sc82.43 Carica papaya HOM05D005195 ORTHO05D006088 1.2e-20 103.2 85 63.5
Duzib150G0538 Durio zibethinus HOM05D005195 ORTHO05D006088 4.1e-18 94.7 87 58.6
Duzib187G0988 Durio zibethinus HOM05D005195 ORTHO05D006088 4.1e-18 94.7 85 60.0
Nn6g35744 Nelumbo nucifera HOM05D005195 ORTHO05D006088 4.1e-18 94.7 86 60.5
Duzib168G1130 Durio zibethinus HOM05D005195 ORTHO05D006088 2.0e-17 92.4 87 55.2
Thecc.09G067900 Theobroma cacao HOM05D005195 ORTHO05D006088 7.8e-17 90.5 87 57.5
Zm00001eb358540 Zea mays HOM05D013797 ORTHO05D445532 3.9e-16 88.2 51 90.2
Dinv25492 Davidia involucrata HOM05D005195 ORTHO05D006088 1.9e-15 85.9 86 55.8
Atru.chr7.1799 Acer truncatum HOM05D005195 ORTHO05D006088 3.3e-15 85.1 86 53.5
TWI63G0336 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 3.3e-15 85.1 86 57.0
Ciclev10008817m.g Citrus clementina HOM05D005195 ORTHO05D006088 7.3e-15 84.0 86 53.5
TWI34G1666 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 7.3e-15 84.0 86 55.8
Actinidia39605 Actinidia chinensis HOM05D005195 ORTHO05D006088 8.1e-14 80.5 76 56.6
CiPaw.03G199200 Carya illinoinensis HOM05D005195 ORTHO05D006088 8.1e-14 80.5 90 50.0
Gorai.001G018400 Gossypium raimondii HOM05D005195 ORTHO05D006088 1.4e-13 79.7 87 51.7
Potri.006G216500 Populus trichocarpa HOM05D005195 ORTHO05D006088 1.8e-13 79.3 87 52.9
GSVIVG01014997001 Vitis vinifera HOM05D005195 ORTHO05D006088 1.8e-13 79.3 86 51.2
MBI19_g32876_MAGBIO Magnolia biondii HOM05D005195 ORTHO05D006088 2.3e-13 79.0 86 52.3
Manes.16G088800 Manihot esculenta HOM05D005195 ORTHO05D006088 2.3e-13 79.0 90 52.2
Lj7A694G45 Lonicera japonica HOM05D005195 ORTHO05D006088 4.0e-13 78.2 61 63.9
Zm00001eb382840 Zea mays HOM05D003596 ORTHO05D004256 4.0e-13 78.2 58 65.5
CSS0045452 Camellia sinensis var. sinensis HOM05D005195 ORTHO05D006088 5.2e-13 77.8 87 52.9
Migut.L01605 Erythranthe guttata HOM05D005195 ORTHO05D006088 5.2e-13 77.8 78 52.6
Rhsim05G0001200 Rhododendron simsii HOM05D005195 ORTHO05D006088 5.2e-13 77.8 89 49.4
THA.LOC104804446 Tarenaya hassleriana HOM05D005195 ORTHO05D006088 6.8e-13 77.4 92 48.9
TAR383G0985 Trochodendron aralioides HOM05D005195 ORTHO05D006088 6.8e-13 77.4 65 60.0
Gohir.D06G081300 Gossypium hirsutum HOM05D005195 ORTHO05D006088 1.2e-12 76.6 87 51.7
Gorai.010G094600 Gossypium raimondii HOM05D005195 ORTHO05D006088 1.2e-12 76.6 87 51.7
CAN.G88.12 Capsicum annuum HOM05D005195 ORTHO05D006088 1.5e-12 76.3 75 56.0
Dinv42438 Davidia involucrata HOM05D005195 ORTHO05D006088 1.5e-12 76.3 91 51.6
MSTRG.26504 Avicennia marina HOM05D005195 ORTHO05D006088 2.6e-12 75.5 70 54.3
PSO421G0417 Papaver somniferum HOM05D005195 ORTHO05D006088 2.6e-12 75.5 78 50.0
QL11p003443 Quercus lobata HOM05D005195 ORTHO05D006088 2.6e-12 75.5 59 64.4
Actinidia33513 Actinidia chinensis HOM05D000417 ORTHO05D006088 3.4e-12 75.1 86 50.0
Gohir.D07G017700 Gossypium hirsutum HOM05D005195 ORTHO05D006088 3.4e-12 75.1 87 49.4
Sabra06G0166900 Salix brachista HOM05D005195 ORTHO05D006088 3.4e-12 75.1 85 47.1
vmacro06379 Vaccinium macrocarpon HOM05D005195 ORTHO05D006088 3.4e-12 75.1 87 49.4
MSTRG.19420 Avicennia marina HOM05D005195 ORTHO05D006088 4.4e-12 74.7 86 45.3
Haze_26081 Corylus avellana HOM05D005195 ORTHO05D006088 4.4e-12 74.7 87 52.9
Prupe.7G189700 Prunus persica HOM05D005195 ORTHO05D006088 4.4e-12 74.7 89 55.1
Gohir.A06G082100 Gossypium hirsutum HOM05D005195 ORTHO05D006088 5.8e-12 74.3 87 50.6
HPP92_027596 Vanilla planifolia HOM05D005195 ORTHO05D006088 5.8e-12 74.3 64 65.6
Aqoxy7G00925 Aquilegia oxysepala HOM05D005195 ORTHO05D006088 7.5e-12 73.9 86 50.0
TPR.G12689 Trifolium pratense HOM05D005195 ORTHO05D006088 7.5e-12 73.9 72 52.8
HPP92_002369 Vanilla planifolia HOM05D005195 ORTHO05D006088 7.5e-12 73.9 64 64.1
AT4G33140 Arabidopsis thaliana HOM05D005195 ORTHO05D006088 9.9e-12 73.6 92 47.8
EL10Ac8g18946 Beta vulgaris HOM05D005195 ORTHO05D006088 1.3e-11 73.2 95 46.3
ClCG03G014710 Citrullus lanatus HOM05D005195 ORTHO05D006088 1.3e-11 73.2 67 56.7
SalBow6G3026 Salvia bowleyana HOM05D005195 ORTHO05D006088 1.3e-11 73.2 89 50.6
SGA_v2.0_scaffold31G12703 Striga asiatica HOM05D005195 ORTHO05D006088 1.3e-11 73.2 82 53.7
ATR0099G089 Amborella trichopoda HOM05D005195 ORTHO05D006088 1.7e-11 72.8 74 52.7
CsaV3_1G041450 Cucumis sativus L. HOM05D005195 ORTHO05D006088 1.7e-11 72.8 67 55.2
Gohir.A07G017900 Gossypium hirsutum HOM05D005195 ORTHO05D006088 1.7e-11 72.8 88 50.0
Lj6g0001650 Lotus japonicus HOM05D005195 ORTHO05D006088 1.7e-11 72.8 43 79.1
MD02G1105400 Malus domestica HOM05D005195 ORTHO05D006088 1.7e-11 72.8 87 51.7
Phvul.009G221900 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 1.7e-11 72.8 56 66.1
PGR142G1085 Punica granatum HOM05D005195 ORTHO05D006088 1.7e-11 72.8 87 52.9
Migut.J00869 Erythranthe guttata HOM05D005195 ORTHO05D006088 2.2e-11 72.4 66 57.6
Oeu010852.1 Olea europaea HOM05D005195 ORTHO05D006088 2.2e-11 72.4 62 56.5
Oeu010853.1 Olea europaea HOM05D005195 ORTHO05D006088 2.2e-11 72.4 62 56.5
Oeu055315.1 Olea europaea HOM05D005195 ORTHO05D006088 2.2e-11 72.4 63 57.1
DCAR_024788 Daucus carota HOM05D005195 ORTHO05D006088 3.7e-11 71.6 43 76.7
Lj4g0025754 Lotus japonicus HOM05D005195 ORTHO05D006088 3.7e-11 71.6 43 76.7
VMungo1309G1826 Vigna mungo HOM05D005195 ORTHO05D006088 3.7e-11 71.6 56 64.3
Sed0003985 Sechium edule HOM05D005195 ORTHO05D006088 4.9e-11 71.2 95 44.2
Hund08917 Selenicereus undatus HOM05D005195 ORTHO05D006088 4.9e-11 71.2 43 76.7
CDE06G1243 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 6.4e-11 70.9 88 47.7
Eucgr.C00758 Eucalyptus grandis HOM05D005195 ORTHO05D006088 6.4e-11 70.9 43 74.4
MD15G1225300 Malus domestica HOM05D005195 ORTHO05D006088 6.4e-11 70.9 88 50.0
PGSC0003DMG400002304 Solanum tuberosum HOM05D005195 ORTHO05D006088 6.4e-11 70.9 78 52.6
CANSAT56G1537 Cannabis sativa HOM05D005195 ORTHO05D006088 8.3e-11 70.5 95 47.4
Medtr2g044900 Medicago truncatula HOM05D005195 ORTHO05D006088 8.3e-11 70.5 43 76.7
FvH4_1g09650 Fragaria vesca HOM05D005195 ORTHO05D006088 1.1e-10 70.1 43 74.4
FAN19G0176 Fragaria x ananassa HOM05D005195 ORTHO05D006088 1.1e-10 70.1 43 74.4
FAN23G0045 Fragaria x ananassa HOM05D005195 ORTHO05D006088 1.1e-10 70.1 43 74.4
FAN26G0153 Fragaria x ananassa HOM05D005195 ORTHO05D006088 1.1e-10 70.1 43 74.4
FAN26G2084 Fragaria x ananassa HOM05D005195 ORTHO05D006088 1.1e-10 70.1 43 74.4
Glyma.09G077400 Glycine max HOM05D005195 ORTHO05D006088 1.1e-10 70.1 56 66.1
Peaxi162Scf00452g00122 Petunia axillaris HOM05D005195 ORTHO05D006088 1.1e-10 70.1 72 52.8
Sopen07g006530 Solanum pennellii HOM05D005195 ORTHO05D006088 1.1e-10 70.1 78 51.3
Aa31sc810G10 Aethionema arabicum HOM05D005195 ORTHO05D006088 1.4e-10 69.7 88 48.9
Carub.0007s0732 Capsella rubella HOM05D005195 ORTHO05D006088 1.4e-10 69.7 94 42.6
Thhalv10025620m.g Eutrema salsugineum HOM05D005195 ORTHO05D006088 1.4e-10 69.7 92 44.6
MELO3C015557.2 Cucumis melo HOM05D005195 ORTHO05D006088 2.4e-10 68.9 67 53.7
RcHm_v2.0_Chr2g0096491 Rosa chinensis HOM05D005195 ORTHO05D006088 2.4e-10 68.9 43 72.1
BcaC09g52118 Brassica carinata HOM05D005195 ORTHO05D006088 3.2e-10 68.6 43 72.1
Cfa002928 Carpinus fangiana HOM05D005195 ORTHO05D006088 3.2e-10 68.6 87 49.4
Nitab4.5_0000055g0120 Nicotiana tabacum HOM05D005195 ORTHO05D006088 4.1e-10 68.2 73 52.1
Psat1g139120 Pisum sativum HOM05D005195 ORTHO05D006088 4.1e-10 68.2 43 74.4
Sp7g30880 Schrenkiella parvula HOM05D005195 ORTHO05D006088 4.1e-10 68.2 92 44.6
BcaNung02154 Brassica carinata HOM05D005195 ORTHO05D006088 5.4e-10 67.8 43 72.1
C07p59500 Brassica napus HOM05D005195 ORTHO05D006088 5.4e-10 67.8 43 72.1
BolC7t46394H Brassica oleracea HOM05D005195 ORTHO05D006088 5.4e-10 67.8 43 72.1
Medtr4g124450 Medicago truncatula HOM05D005195 ORTHO05D006088 5.4e-10 67.8 43 72.1
AL7G18430 Arabidopsis lyrata HOM05D005195 ORTHO05D006088 7.1e-10 67.4 92 46.7
Ca_21349_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 7.1e-10 67.4 81 46.9
Glyma.13G115600 Glycine max HOM05D005195 ORTHO05D006088 7.1e-10 67.4 43 74.4
Glyma.17G044200 Glycine max HOM05D005195 ORTHO05D006088 7.1e-10 67.4 43 74.4
Phvul.003G126200 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 7.1e-10 67.4 43 74.4
Psat4g019920 Pisum sativum HOM05D005195 ORTHO05D006088 7.1e-10 67.4 43 72.1
Solyc07g017710.1 Solanum lycopersicum HOM05D005195 ORTHO05D006088 7.1e-10 67.4 43 72.1
TPR.G25386 Trifolium pratense HOM05D005195 ORTHO05D006088 7.1e-10 67.4 43 74.4
VMungo1215G2768 Vigna mungo HOM05D005195 ORTHO05D006088 7.1e-10 67.4 43 74.4
CDE05G1368 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 1.2e-09 66.6 43 72.1
Lalb_Chr07g0181481 Lupinus albus HOM05D005195 ORTHO05D006088 1.2e-09 66.6 43 72.1
Lalb_Chr12g0200391 Lupinus albus HOM05D005195 ORTHO05D006088 1.2e-09 66.6 56 58.9
Cc00_g13790 Coffea canephora HOM05D005195 ORTHO05D006088 1.6e-09 66.2 43 69.8
Ca_29779_v3 Cicer arietinum L. HOM05D000417 ORTHO05D000342 2.1e-09 65.9 80 47.5
Nitab4.5_0001114g0020 Nicotiana tabacum HOM05D005195 ORTHO05D006088 2.1e-09 65.9 82 47.6
Lalb_Chr13g0299131 Lupinus albus HOM05D005195 ORTHO05D006088 2.7e-09 65.5 41 70.7
arahy.Tifrunner.gnm1.ann1.EYB30S Arachis hypogaea HOM05D005195 ORTHO05D006088 3.5e-09 65.1 43 72.1
SHI27969 Sapria himalayana HOM05D005195 ORTHO05D006088 4.6e-09 64.7 43 67.4
A03p61820 Brassica napus HOM05D005195 ORTHO05D006088 7.8e-09 63.9 44 70.5
C01p05540 Brassica napus HOM05D005195 ORTHO05D006088 7.8e-09 63.9 44 70.5
BolC1t00534H Brassica oleracea HOM05D005195 ORTHO05D006088 7.8e-09 63.9 44 70.5
BraA03t15220Z Brassica rapa HOM05D005195 ORTHO05D006088 7.8e-09 63.9 44 70.5
CDE07G0654 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 1.0e-08 63.5 43 67.4
HPP92_019108 Vanilla planifolia HOM05D005195 ORTHO05D006088 1.0e-08 63.5 57 54.4
A01p05070 Brassica napus HOM05D005195 ORTHO05D006088 1.7e-08 62.8 44 68.2
BraA01t00489Z Brassica rapa HOM05D005195 ORTHO05D006088 1.7e-08 62.8 44 68.2
unitig_578.g15872 Utricularia gibba HOM05D005195 ORTHO05D006088 2.3e-08 62.4 43 65.1
PSO104G0051 Papaver somniferum HOM05D005195 ORTHO05D006088 3.0e-08 62.0 78 44.9
AUR62025326 Chenopodium quinoa HOM05D005195 ORTHO05D006088 2.5e-07 58.9 94 40.4
AUR62028337 Chenopodium quinoa HOM05D005195 ORTHO05D006088 2.5e-07 58.9 95 40.0
Mapoly0181s0009 Marchantia polymorpha HOM05D005195 ORTHO05D006088 3.3e-07 58.5 72 40.3
arahy.Tifrunner.gnm1.ann1.QID06X Arachis hypogaea HOM05D005195 ORTHO05D006088 5.6e-07 57.8 43 67.4
Sc14g0000920 Simmondsia chinensis HOM05D005195 ORTHO05D006088 7.3e-07 57.4 34 73.5
SEGI_21946 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 1.2e-06 56.6 43 62.8
Pp3c5_26930 Physcomitrium patens HOM05D005195 ORTHO05D006088 2.8e-06 55.5 41 58.5


User provided reference genes

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