Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb045350 Zea mays HOM05D006333 ORTHO05D007799 7.0e-75 283.9 144 100.0
Os10g0486000 Oryza sativa ssp. japonica HOM05D006333 ORTHO05D007799 5.4e-67 257.7 143 88.1
MBI06_g42293_MAGBIO Magnolia biondii HOM05D006333 ORTHO05D007799 1.1e-51 206.8 143 69.2
HPP92_008575 Vanilla planifolia HOM05D006333 ORTHO05D007799 2.4e-51 205.7 143 69.9
Sed0022709 Sechium edule HOM05D006333 ORTHO05D007799 5.4e-51 204.5 143 69.9
Psat7g233400 Pisum sativum HOM05D006333 ORTHO05D007799 1.6e-50 203.0 140 72.9
Medtr4g023480 Medicago truncatula HOM05D006333 ORTHO05D007799 2.7e-50 202.2 143 70.6
COL.COLO4_08588 Corchorus olitorius HOM05D006333 ORTHO05D007799 3.5e-50 201.8 143 68.5
MELO3C024016.2 Cucumis melo HOM05D006333 ORTHO05D007799 4.6e-50 201.4 143 69.2
CsaV3_3G031750 Cucumis sativus L. HOM05D006333 ORTHO05D007799 4.6e-50 201.4 143 69.2
ATR0618G379 Amborella trichopoda HOM05D006333 ORTHO05D007799 1.0e-49 200.3 143 65.7
Solyc02g014720.4 Solanum lycopersicum HOM05D006333 ORTHO05D007799 1.0e-49 200.3 143 68.5
CANSAT56G2519 Cannabis sativa HOM05D006333 ORTHO05D007799 1.3e-49 199.9 143 67.8
Ca_19901_v3 Cicer arietinum L. HOM05D006333 ORTHO05D007799 1.3e-49 199.9 140 70.7
Thhalv10008690m.g Eutrema salsugineum HOM05D006333 ORTHO05D007799 1.3e-49 199.9 143 69.2
Sopen02g004090 Solanum pennellii HOM05D006333 ORTHO05D007799 1.3e-49 199.9 143 68.5
Cpa.g.sc0.135 Carica papaya HOM05D006333 ORTHO05D007799 1.7e-49 199.5 143 69.9
RcHm_v2.0_Chr4g0446761 Rosa chinensis HOM05D006333 ORTHO05D007799 1.7e-49 199.5 143 67.8
TPR.G9857 Trifolium pratense HOM05D006333 ORTHO05D007799 2.3e-49 199.1 143 69.2
FvH4_4g36970 Fragaria vesca HOM05D006333 ORTHO05D007799 3.0e-49 198.7 143 67.1
FAN12G1853 Fragaria x ananassa HOM05D006333 ORTHO05D007799 3.0e-49 198.7 143 67.1
Aa31LG7G2140 Aethionema arabicum HOM05D006333 ORTHO05D007799 3.9e-49 198.4 143 67.8
FAN07G1904 Fragaria x ananassa HOM05D006333 ORTHO05D007799 3.9e-49 198.4 143 66.4
ECA233G4371 Erigeron canadensis HOM05D006333 ORTHO05D007799 5.0e-49 198.0 143 69.9
Ciclev10032700m.g Citrus clementina HOM05D006333 ORTHO05D007799 6.6e-49 197.6 143 67.8
Thecc.02G159600 Theobroma cacao HOM05D006333 ORTHO05D007799 1.1e-48 196.8 143 68.5
Dinv17616 Davidia involucrata HOM05D006333 ORTHO05D007799 1.5e-48 196.4 143 67.1
Glyma.12G026000 Glycine max HOM05D006333 ORTHO05D007799 1.9e-48 196.1 140 70.0
THA.LOC104808350 Tarenaya hassleriana HOM05D006333 ORTHO05D007799 1.9e-48 196.1 143 67.8
Phvul.011G028900 Phaseolus vulgaris HOM05D006333 ORTHO05D007799 2.5e-48 195.7 140 69.3
Hund24376 Selenicereus undatus HOM05D006333 ORTHO05D007799 2.5e-48 195.7 143 67.1
CSS0015547 Camellia sinensis var. sinensis HOM05D006333 ORTHO05D007799 5.6e-48 194.5 133 69.2
CAN.G1011.5 Capsicum annuum HOM05D006333 ORTHO05D007799 5.6e-48 194.5 143 67.8
Manes.04G057700 Manihot esculenta HOM05D006333 ORTHO05D007799 5.6e-48 194.5 143 65.7
Prupe.1G347700 Prunus persica HOM05D006333 ORTHO05D007799 5.6e-48 194.5 143 66.4
Nitab4.5_0008825g0020 Nicotiana tabacum HOM05D006333 ORTHO05D007799 7.3e-48 194.1 143 67.1
Lj3g0001632 Lotus japonicus HOM05D006333 ORTHO05D007799 9.5e-48 193.7 140 67.9
AL1G29580 Arabidopsis lyrata HOM05D006333 ORTHO05D007799 1.2e-47 193.4 140 67.1
GSVIVG01012055001 Vitis vinifera HOM05D006333 ORTHO05D007799 1.2e-47 193.4 143 67.1
Aqoxy3G04253 Aquilegia oxysepala HOM05D006333 ORTHO05D007799 1.6e-47 193.0 143 67.1
Duzib132G1109 Durio zibethinus HOM05D006333 ORTHO05D007799 1.6e-47 193.0 143 65.7
Lalb_Chr01g0001411 Lupinus albus HOM05D006333 ORTHO05D007799 1.6e-47 193.0 140 67.9
CARHR017920 Cardamine hirsuta HOM05D006333 ORTHO05D007799 2.1e-47 192.6 143 66.4
HanXRQChr12g0366301 Helianthus annuus HOM05D006333 ORTHO05D007799 2.1e-47 192.6 143 66.4
Rhsim09G0071800 Rhododendron simsii HOM05D006333 ORTHO05D007799 2.1e-47 192.6 143 65.7
Nitab4.5_0003092g0070 Nicotiana tabacum HOM05D006333 ORTHO05D007799 2.8e-47 192.2 143 67.1
AT1G17330 Arabidopsis thaliana HOM05D006333 ORTHO05D007799 3.6e-47 191.8 140 65.7
VMungo1127G0165 Vigna mungo HOM05D006333 ORTHO05D007799 3.6e-47 191.8 140 68.6
PGR044G2499 Punica granatum HOM05D006333 ORTHO05D007799 4.7e-47 191.4 141 65.2
TWI53G1586 Tripterygium wilfordii HOM05D006333 ORTHO05D007799 4.7e-47 191.4 143 66.4
Atru.chr11.1164 Acer truncatum HOM05D006333 ORTHO05D007799 6.2e-47 191.0 143 66.4
EL10Ac9g22952 Beta vulgaris HOM05D006333 ORTHO05D007799 6.2e-47 191.0 143 63.6
Gohir.A13G060400 Gossypium hirsutum HOM05D006333 ORTHO05D007799 8.0e-47 190.7 143 67.1
Nn5g28807 Nelumbo nucifera HOM05D006333 ORTHO05D007799 8.0e-47 190.7 143 65.0
CSS0049289 Camellia sinensis var. sinensis HOM05D006333 ORTHO05D007799 1.1e-46 190.3 143 63.6
Lj3A849G43 Lonicera japonica HOM05D006333 ORTHO05D007799 1.1e-46 190.3 143 65.0
MSTRG.11948 Avicennia marina HOM05D006333 ORTHO05D007799 1.8e-46 189.5 143 67.1
Lsat_1_v5_gn_8_33120 Lactuca sativa HOM05D006333 ORTHO05D007799 1.8e-46 189.5 145 66.9
Potri.007G072000 Populus trichocarpa HOM05D006333 ORTHO05D007799 2.3e-46 189.1 143 66.4
Eucgr.J00869 Eucalyptus grandis HOM05D006333 ORTHO05D007799 3.1e-46 188.7 143 64.3
unitig_32.g11605 Utricularia gibba HOM05D006333 ORTHO05D007799 4.0e-46 188.3 143 65.0
AUR62017701 Chenopodium quinoa HOM05D006333 ORTHO05D007799 5.2e-46 188.0 140 65.0
MD13G1004800 Malus domestica HOM05D006333 ORTHO05D007799 6.8e-46 187.6 146 65.8
PSO782G2700 Papaver somniferum HOM05D006333 ORTHO05D007799 8.9e-46 187.2 143 63.6
Hma1.2p1_0044F.1_g026090 Hydrangea macrophylla HOM05D006333 ORTHO05D007799 1.5e-45 186.4 142 61.3
Peaxi162Scf00334g00421 Petunia axillaris HOM05D006333 ORTHO05D007799 2.0e-45 186.0 136 67.6
Prupe.1G347900 Prunus persica HOM05D006333 ORTHO05D007799 2.6e-45 185.7 143 62.9
SGA_v2.0_scaffold173G39125 Striga asiatica HOM05D006333 ORTHO05D007799 3.4e-45 185.3 143 65.0
BcaC05g25649 Brassica carinata HOM05D006333 ORTHO05D007799 5.8e-45 184.5 143 65.7
C05p15710 Brassica napus HOM05D006333 ORTHO05D007799 5.8e-45 184.5 143 65.7
BolC5t30276H Brassica oleracea HOM05D006333 ORTHO05D007799 5.8e-45 184.5 143 65.7
Sp1g15450 Schrenkiella parvula HOM05D006333 ORTHO05D007799 5.8e-45 184.5 143 65.7
AUR62032988 Chenopodium quinoa HOM05D006333 ORTHO05D007799 7.5e-45 184.1 143 62.9
Gohir.D13G061500 Gossypium hirsutum HOM05D006333 ORTHO05D007799 9.8e-45 183.7 143 65.0
Sabra07G0060700 Salix brachista HOM05D006333 ORTHO05D007799 1.3e-44 183.3 143 64.3
BcaB07g34033 Brassica carinata HOM05D006333 ORTHO05D007799 1.7e-44 183.0 143 65.0
Eucgr.J00870 Eucalyptus grandis HOM05D006333 ORTHO05D007799 1.7e-44 183.0 143 62.9
CDE02G3779 Ceratophyllum demersum HOM05D006333 ORTHO05D007799 2.9e-44 182.2 130 66.9
FAN17G3063 Fragaria x ananassa HOM05D006333 ORTHO05D007799 4.9e-44 181.4 167 56.3
TAR629G0175 Trochodendron aralioides HOM05D006333 ORTHO05D007799 8.3e-44 180.6 143 62.2
Gorai.013G070000 Gossypium raimondii HOM05D006333 ORTHO05D007799 1.1e-43 180.3 149 63.1
CiPaw.05G169800 Carya illinoinensis HOM05D006333 ORTHO05D007799 1.9e-43 179.5 143 62.2
Sc17g0000100 Simmondsia chinensis HOM05D006333 ORTHO05D007799 1.9e-43 179.5 143 60.8
arahy.Tifrunner.gnm1.ann1.A0JP3J Arachis hypogaea HOM05D006333 ORTHO05D007799 3.2e-43 178.7 118 74.6
BraA06t24479Z Brassica rapa HOM05D006333 ORTHO05D007799 5.4e-43 177.9 143 63.6
arahy.Tifrunner.gnm1.ann1.N7V6FU Arachis hypogaea HOM05D006333 ORTHO05D007799 9.2e-43 177.2 118 74.6
Carub.0001s1708 Capsella rubella HOM05D006333 ORTHO05D007799 1.2e-42 176.8 143 61.5
Atru.chr11.2675 Acer truncatum HOM05D006333 ORTHO05D007799 1.6e-42 176.4 138 64.5
A06p13260 Brassica napus HOM05D006333 ORTHO05D007799 2.7e-42 175.6 143 62.2
Atru.chr11.2676 Acer truncatum HOM05D006333 ORTHO05D007799 1.0e-41 173.7 138 63.8
Migut.A00709 Erythranthe guttata HOM05D006333 ORTHO05D007799 3.0e-41 172.2 143 60.8
ClCG10G012010 Citrullus lanatus HOM05D006333 ORTHO05D007799 8.6e-41 170.6 126 67.5
SMO116G0442 Selaginella moellendorffii HOM05D006333 ORTHO05D007799 1.1e-40 170.2 144 59.7
vmacro16037 Vaccinium macrocarpon HOM05D006333 ORTHO05D007799 3.3e-40 168.7 121 66.9
PSO063G3232 Papaver somniferum HOM05D006333 ORTHO05D007799 6.2e-39 164.5 120 66.7
Cfa008751 Carpinus fangiana HOM05D006333 ORTHO05D007799 3.1e-38 162.2 143 58.7
SGA_v2.0_scaffold146G36264 Striga asiatica HOM05D006333 ORTHO05D007799 3.1e-38 162.2 143 60.1
Cc11_g02420 Coffea canephora HOM05D006333 ORTHO05D007799 5.8e-37 157.9 143 56.6
Cre05.g234647 Chlamydomonas reinhardtii HOM05D006333 ORTHO05D007799 9.9e-37 157.1 150 54.0
Pp3c7_23360 Physcomitrium patens HOM05D006333 ORTHO05D007799 1.9e-35 152.9 140 55.0
Actinidia11766 Actinidia chinensis HOM05D006333 ORTHO05D007799 2.4e-35 152.5 145 55.2
Mapoly0006s0058 Marchantia polymorpha HOM05D006333 ORTHO05D007799 4.1e-35 151.8 140 52.1
Ah.01g001500 Amaranthus hybridus HOM05D006333 ORTHO05D007799 9.5e-32 140.6 114 61.4
SalBow7G0482 Salvia bowleyana HOM05D006333 ORTHO05D007799 1.2e-31 140.2 143 53.8
DCAR_008496 Daucus carota HOM05D003141 ORTHO05D003633 1.1e-30 137.1 114 62.3
SalBow1G5083 Salvia bowleyana HOM05D006333 ORTHO05D007799 2.4e-30 136.0 105 66.7
CBR_g5629 Chara braunii HOM05D006333 ORTHO05D007799 8.9e-30 134.0 106 64.2
MCO07G572 Micromonas commoda HOM05D006333 ORTHO05D007799 8.9e-30 134.0 144 50.0
QL03p044200 Quercus lobata HOM05D006333 ORTHO05D007799 1.9e-27 126.3 86 68.6
PRCOL_00000482 Prasinoderma coloniale HOM05D006333 ORTHO05D007799 2.3e-25 119.4 143 44.1
Actinidia13050 Actinidia chinensis HOM05D006333 ORTHO05D007799 3.1e-22 109.0 143 44.8
Ah.05g173900 Amaranthus hybridus HOM05D006333 ORTHO05D007799 3.1e-22 109.0 85 64.7
Haze_11767 Corylus avellana HOM05D006333 ORTHO05D007799 7.8e-18 94.4 89 53.9
Thecc.08G107200 Theobroma cacao HOM05D006333 ORTHO05D007799 3.6e-15 85.5 70 61.4
Haze_06289 Corylus avellana HOM05D006333 ORTHO05D007799 5.3e-14 81.6 51 72.5
Cfa023716 Carpinus fangiana HOM05D006333 ORTHO05D007799 5.4e-11 71.6 107 42.1
Haze_18642 Corylus avellana HOM05D006333 ORTHO05D007799 2.1e-10 69.7 67 55.2
QL03p044193 Quercus lobata HOM05D006333 ORTHO05D007799 3.7e-07 58.9 55 56.4


User provided reference genes

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