Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 2.9e-55 218.4 115 100.0
Os10g0491900 Oryza sativa ssp. japonica HOM05D006753 ORTHO05D008521 4.3e-43 177.9 115 82.6
Lj5g0026283 Lotus japonicus HOM05D006753 ORTHO05D008521 4.6e-29 131.3 114 64.0
Nn3g18540 Nelumbo nucifera HOM05D006753 ORTHO05D008521 6.0e-29 131.0 114 61.4
Thecc.02G152400 Theobroma cacao HOM05D006753 ORTHO05D008521 1.0e-28 130.2 113 64.6
Medtr1g115255 Medicago truncatula HOM05D006753 ORTHO05D008521 1.8e-28 129.4 113 63.7
Phvul.007G012200 Phaseolus vulgaris HOM05D006753 ORTHO05D008521 5.1e-28 127.9 117 60.7
Cfa018673 Carpinus fangiana HOM05D006753 ORTHO05D008521 1.1e-27 126.7 114 61.4
CsaV3_5G029140 Cucumis sativus L. HOM05D006753 ORTHO05D008521 1.1e-27 126.7 114 61.4
Duzib052G0750 Durio zibethinus HOM05D006753 ORTHO05D008521 1.5e-27 126.3 116 62.9
Duzib132G0454 Durio zibethinus HOM05D006753 ORTHO05D008521 1.9e-27 125.9 113 61.1
TAR629G2108 Trochodendron aralioides HOM05D006753 ORTHO05D008521 2.5e-27 125.6 114 60.5
MELO3C011766.2 Cucumis melo HOM05D006753 ORTHO05D008521 4.3e-27 124.8 114 60.5
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 4.3e-27 124.8 112 62.5
Glyma.10G288900 Glycine max HOM05D006753 ORTHO05D008521 1.6e-26 122.9 115 59.1
TWI53G0448 Tripterygium wilfordii HOM05D006753 ORTHO05D008521 1.6e-26 122.9 114 58.8
MBI03_g11899_MAGBIO Magnolia biondii HOM05D006753 ORTHO05D008521 6.3e-26 120.9 112 58.9
Sed0019092 Sechium edule HOM05D006753 ORTHO05D008521 6.3e-26 120.9 113 60.2
QL01p000327 Quercus lobata HOM05D006753 ORTHO05D008521 1.1e-25 120.2 112 58.9
MD13G1001300 Malus domestica HOM05D006753 ORTHO05D008521 1.4e-25 119.8 113 61.9
Oeu006328.1 Olea europaea HOM05D006753 ORTHO05D008521 1.4e-25 119.8 114 58.8
MSTRG.13663 Avicennia marina HOM05D006753 ORTHO05D008521 1.8e-25 119.4 112 61.6
FAN17G2405 Fragaria x ananassa HOM05D006753 ORTHO05D008521 2.4e-25 119.0 113 61.1
FvH4_4g37311 Fragaria vesca HOM05D006753 ORTHO05D008521 4.1e-25 118.2 113 60.2
RcHm_v2.0_Chr4g0447151 Rosa chinensis HOM05D006753 ORTHO05D008521 5.3e-25 117.9 113 61.9
Aqoxy3G04333 Aquilegia oxysepala HOM05D006753 ORTHO05D008521 6.9e-25 117.5 105 60.0
Ca_11278_v3 Cicer arietinum L. HOM05D006753 ORTHO05D008521 6.9e-25 117.5 113 58.4
GSVIVG01034354001 Vitis vinifera HOM05D006753 ORTHO05D008521 6.9e-25 117.5 115 56.5
ATR0124G001 Amborella trichopoda HOM05D006753 ORTHO05D008521 1.2e-24 116.7 114 60.5
EL10Ac9g23017 Beta vulgaris HOM05D006753 ORTHO05D008521 2.0e-24 115.9 115 56.5
FAN07G1749 Fragaria x ananassa HOM05D006753 ORTHO05D008521 2.0e-24 115.9 113 60.2
Ciclev10017207m.g Citrus clementina HOM05D006753 ORTHO05D008521 2.6e-24 115.5 117 59.0
Manes.04G161100 Manihot esculenta HOM05D006753 ORTHO05D008521 2.6e-24 115.5 114 60.5
CDE05G2438 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 3.4e-24 115.2 114 57.0
Lalb_Chr02g0144111 Lupinus albus HOM05D006753 ORTHO05D008521 4.5e-24 114.8 115 58.3
PGR044G1510 Punica granatum HOM05D006753 ORTHO05D008521 5.9e-24 114.4 114 58.8
CDE05G0871 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 7.6e-24 114.0 113 56.6
ClCG11G012760 Citrullus lanatus HOM05D006753 ORTHO05D008521 7.6e-24 114.0 114 56.1
Migut.E00658 Erythranthe guttata HOM05D006753 ORTHO05D008521 7.6e-24 114.0 117 53.8
Migut.E00593 Erythranthe guttata HOM05D006753 ORTHO05D008521 1.0e-23 113.6 115 56.5
Sabra08G0001000 Salix brachista HOM05D006753 ORTHO05D008521 1.0e-23 113.6 122 54.9
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 1.7e-23 112.8 114 56.1
Thhalv10002245m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 1.7e-23 112.8 116 55.2
VMungo0720G0065 Vigna mungo HOM05D006753 ORTHO05D008521 1.7e-23 112.8 115 59.1
CANSAT78G0938 Cannabis sativa HOM05D006753 ORTHO05D008521 2.2e-23 112.5 115 55.7
ECA238G1815 Erigeron canadensis HOM05D006753 ORTHO05D008521 2.9e-23 112.1 114 56.1
Potri.008G003100 Populus trichocarpa HOM05D006753 ORTHO05D008521 3.8e-23 111.7 124 53.2
CiPaw.16G000900 Carya illinoinensis HOM05D006753 ORTHO05D008521 5.0e-23 111.3 113 58.4
Atru.chr11.42 Acer truncatum HOM05D006753 ORTHO05D008521 6.5e-23 110.9 116 56.9
Sc21g0003760 Simmondsia chinensis HOM05D006753 ORTHO05D008521 6.5e-23 110.9 115 55.7
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 1.1e-22 110.2 115 58.3
SEGI_09956 Sequoiadendron giganteum HOM05D006753 ORTHO05D008521 1.4e-22 109.8 114 53.5
Sopen03g009600 Solanum pennellii HOM05D006753 ORTHO05D008521 1.4e-22 109.8 120 50.8
COL.COLO4_33141 Corchorus olitorius HOM05D006753 ORTHO05D008521 1.9e-22 109.4 122 54.9
Psat6g234480 Pisum sativum HOM05D006753 ORTHO05D008521 3.2e-22 108.6 114 57.9
SGA_v2.0_scaffold119G32769 Striga asiatica HOM05D006753 ORTHO05D008521 3.2e-22 108.6 113 59.3
Dinv25482 Davidia involucrata HOM05D006753 ORTHO05D008521 4.2e-22 108.2 113 55.8
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 1.2e-21 106.7 111 55.0
Rhsim05G0152000 Rhododendron simsii HOM05D006753 ORTHO05D008521 1.2e-21 106.7 106 56.6
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 6.1e-21 104.4 111 54.1
Lsat_1_v5_gn_2_64221 Lactuca sativa HOM05D006753 ORTHO05D008521 7.9e-21 104.0 112 56.2
Sp6g34360 Schrenkiella parvula HOM05D006753 ORTHO05D008521 7.9e-21 104.0 114 54.4
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 1.0e-20 103.6 113 54.9
PGSC0003DMG400018762 Solanum tuberosum HOM05D006753 ORTHO05D008521 1.0e-20 103.6 120 49.2
Gohir.D12G135600 Gossypium hirsutum HOM05D006753 ORTHO05D008521 1.3e-20 103.2 113 52.2
CAN.G815.2 Capsicum annuum HOM05D006753 ORTHO05D008521 6.7e-20 100.9 112 50.0
Nitab4.5_0000075g0200 Nicotiana tabacum HOM05D006753 ORTHO05D008521 6.7e-20 100.9 118 50.0
PSO782G2482 Papaver somniferum HOM05D006753 ORTHO05D008521 8.7e-20 100.5 113 52.2
AUR62020818 Chenopodium quinoa HOM05D006753 ORTHO05D008521 1.1e-19 100.1 114 50.9
Gohir.A12G132000 Gossypium hirsutum HOM05D006753 ORTHO05D008521 1.1e-19 100.1 112 50.9
AT3G52350 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 1.9e-19 99.4 113 54.9
PSO063G2822 Papaver somniferum HOM05D006753 ORTHO05D008521 2.5e-19 99.0 113 52.2
CARHR204450 Cardamine hirsuta HOM05D006753 ORTHO05D008521 3.3e-19 98.6 115 53.0
Gorai.008G146800 Gossypium raimondii HOM05D006753 ORTHO05D008521 3.3e-19 98.6 113 50.4
Nitab4.5_0001307g0130 Nicotiana tabacum HOM05D006753 ORTHO05D008521 9.7e-19 97.1 121 47.1
TPR.G4104 Trifolium pratense HOM05D006753 ORTHO05D008521 9.7e-19 97.1 113 54.0
Lj6g0020021 Lotus japonicus HOM05D006753 ORTHO05D008521 1.3e-18 96.7 113 51.3
Nitab4.5_0008337g0010 Nicotiana tabacum HOM05D006753 ORTHO05D008521 2.8e-18 95.5 121 47.1
Carub.0005s1869 Capsella rubella HOM05D006753 ORTHO05D008521 4.8e-18 94.7 114 53.5
A10p28190 Brassica napus HOM05D006753 ORTHO05D008521 1.4e-17 93.2 114 51.8
BraA09t41301Z Brassica rapa HOM05D006753 ORTHO05D008521 1.4e-17 93.2 121 50.4
BraA10t44868Z Brassica rapa HOM05D006753 ORTHO05D008521 1.4e-17 93.2 114 51.8
AT5G08535 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 2.4e-17 92.4 110 51.8
AL6G19240 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 3.1e-17 92.0 109 52.3
AL5G33000 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 5.3e-17 91.3 115 50.4
C09p68400 Brassica napus HOM05D006753 ORTHO05D008521 3.4e-16 88.6 114 50.0
Pp3c15_7650 Physcomitrium patens HOM05D006753 ORTHO05D008521 3.4e-16 88.6 109 46.8
A09p59170 Brassica napus HOM05D006753 ORTHO05D008521 4.5e-16 88.2 118 50.0
BolC9t59587H Brassica oleracea HOM05D006753 ORTHO05D008521 1.7e-15 86.3 114 48.2
BcaC07g41240 Brassica carinata HOM05D006753 ORTHO05D008521 3.8e-15 85.1 113 48.7
C08p42460 Brassica napus HOM05D006753 ORTHO05D008521 3.8e-15 85.1 113 48.7
BolC8t51807H Brassica oleracea HOM05D006753 ORTHO05D008521 3.8e-15 85.1 113 48.7
BcaB08g34880 Brassica carinata HOM05D006753 ORTHO05D008521 6.5e-15 84.3 113 48.7
Eucgr.J00331 Eucalyptus grandis HOM05D006753 ORTHO05D008521 6.5e-15 84.3 162 37.0
SMO166G0033 Selaginella moellendorffii HOM05D006753 ORTHO05D008521 6.5e-15 84.3 108 46.3
arahy.Tifrunner.gnm1.ann1.IW7U68 Arachis hypogaea HOM05D006753 ORTHO05D008521 1.9e-14 82.8 51 78.4
arahy.Tifrunner.gnm1.ann1.RGG8YR Arachis hypogaea HOM05D006753 ORTHO05D008521 1.9e-14 82.8 51 78.4
SMO115G0110 Selaginella moellendorffii HOM05D000422 ORTHO05D002369 7.2e-14 80.9 106 45.3
Mapoly0001s0293 Marchantia polymorpha HOM05D006753 ORTHO05D008521 6.1e-13 77.8 113 41.6
Peaxi162Scf00003g02334 Petunia axillaris HOM05D006753 ORTHO05D008521 1.0e-12 77.0 111 43.2
HanXRQChr14g0446421 Helianthus annuus HOM05D006753 ORTHO05D008521 2.3e-12 75.9 51 70.6
Prupe.1G351400 Prunus persica HOM05D006753 ORTHO05D008521 3.9e-12 75.1 113 45.1
Cc11_g04160 Coffea canephora HOM05D006753 ORTHO05D008521 5.1e-12 74.7 60 68.3
Carub.0006s0749 Capsella rubella HOM05D006753 ORTHO05D008521 6.7e-12 74.3 114 43.0
SHI21226 Sapria himalayana HOM05D000843 ORTHO05D000698 1.5e-11 73.2 53 71.7
AagrBONN_evm.TU.Sc2ySwM_228.1188 Anthoceros agrestis HOM05D006753 ORTHO05D008521 4.3e-11 71.6 120 41.7
BcaB08g37248 Brassica carinata HOM05D006753 ORTHO05D008521 4.3e-11 71.6 99 49.5
HPP92_003487 Vanilla planifolia HOM05D006753 ORTHO05D008521 5.7e-11 71.2 113 41.6
HPP92_026885 Vanilla planifolia HOM05D006753 ORTHO05D008521 5.7e-11 71.2 113 41.6
Aa31LG3G18000 Aethionema arabicum HOM05D006753 ORTHO05D008521 5.3e-09 64.7 108 42.6
Thhalv10015604m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 5.3e-09 64.7 85 47.1
Nitab4.5_0002355g0040 Nicotiana tabacum HOM05D006753 ORTHO05D008521 3.4e-08 62.0 124 38.7
A07p23720 Brassica napus HOM05D002947 ORTHO05D003447 6.5e-07 57.8 69 40.6
BraA07t30025Z Brassica rapa HOM05D006823 ORTHO05D008608 6.5e-07 57.8 69 40.6
Carub.0005s2475 Capsella rubella HOM05D006823 ORTHO05D008608 6.5e-07 57.8 88 37.5
AT3G57910 Arabidopsis thaliana HOM05D006823 ORTHO05D008608 8.5e-07 57.4 88 36.4
AL5G39560 Arabidopsis lyrata HOM05D006823 ORTHO05D008608 1.1e-06 57.0 69 40.6
C06p24950 Brassica napus HOM05D002947 ORTHO05D003447 3.2e-06 55.5 88 35.2
Sp5g04810 Schrenkiella parvula HOM05D006823 ORTHO05D008608 4.2e-06 55.1 88 34.1
Cre02.g085200 Chlamydomonas reinhardtii HOM05D006753 ORTHO05D008521 9.4e-06 53.9 45 48.9
MCO15G305 Micromonas commoda HOM05D006753 ORTHO05D008521 9.4e-06 53.9 110 35.5
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 9.4e-06 53.9 62 48.4


User provided reference genes

Program Settings