Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 0.0e+00 1845.5 1012 100.0
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 6.6e-305 1050.8 1022 56.6
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 4.2e-299 1031.6 948 58.3
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 7.1e-299 1030.8 954 58.1
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 3.0e-297 1025.4 947 58.2
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 3.0e-297 1025.4 948 57.9
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 3.9e-297 1025.0 959 58.5
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 5.1e-297 1024.6 1009 55.9
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 6.6e-297 1024.2 958 57.8
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 9.6e-296 1020.4 960 57.5
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 2.1e-295 1019.2 954 57.9
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 2.1e-295 1019.2 993 56.3
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 4.8e-295 1018.1 962 57.4
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 6.2e-295 1017.7 993 56.2
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 8.1e-295 1017.3 993 56.3
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 2.0e-293 1012.7 957 57.2
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 3.4e-293 1011.9 934 57.8
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 3.8e-292 1008.4 1012 55.3
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 1.9e-291 1006.1 960 57.4
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 7.1e-291 1004.2 960 57.0
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 9.3e-291 1003.8 952 56.7
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 1.6e-290 1003.0 1017 55.2
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 4.6e-290 1001.5 961 56.2
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 7.9e-290 1000.7 923 57.9
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 2.3e-289 999.2 947 56.0
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 5.1e-289 998.0 948 55.9
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 6.7e-289 997.7 947 56.9
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 1.1e-288 996.9 946 57.1
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 1.5e-288 996.5 981 56.1
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 2.8e-287 992.3 952 56.6
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 2.8e-287 992.3 1015 53.8
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 3.7e-287 991.9 953 57.4
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 1.8e-286 989.6 995 54.8
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 3.1e-286 988.8 952 56.3
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 3.1e-286 988.8 1011 54.4
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 3.1e-286 988.8 1011 54.5
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 3.1e-286 988.8 943 55.9
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 3.1e-286 988.8 953 55.8
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 4.0e-286 988.4 1011 54.4
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 5.3e-286 988.0 1007 54.2
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 9.0e-286 987.3 950 56.4
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 2.6e-285 985.7 952 55.9
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 3.4e-285 985.3 1011 53.5
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 9.9e-285 983.8 1015 53.9
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 9.9e-285 983.8 953 55.7
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 9.9e-285 983.8 1017 54.3
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 9.9e-285 983.8 968 55.9
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 1.3e-284 983.4 1015 54.0
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 1.3e-284 983.4 1017 53.9
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 2.2e-284 982.6 954 55.5
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 2.9e-284 982.2 1004 53.1
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 3.8e-284 981.9 999 53.6
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 8.4e-284 980.7 1020 53.6
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 1.1e-283 980.3 941 56.0
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 1.4e-283 979.9 947 55.6
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 1.4e-283 979.9 1012 53.5
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 4.2e-283 978.4 959 55.2
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 7.1e-283 977.6 963 54.9
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 1.6e-282 976.5 967 54.8
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 2.7e-282 975.7 1007 53.2
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 4.6e-282 974.9 943 55.4
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 6.0e-282 974.5 1016 52.8
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 1.8e-281 973.0 942 55.6
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 3.9e-281 971.8 998 52.9
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 5.1e-281 971.5 990 54.6
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 6.7e-281 971.1 960 54.1
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 1.9e-280 969.5 947 54.7
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 1.9e-280 969.5 990 54.6
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 2.8e-279 965.7 1054 51.8
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 1.1e-278 963.8 953 55.6
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 1.4e-278 963.4 922 55.7
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 1.4e-278 963.4 951 55.2
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 1.2e-277 960.3 957 55.2
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 3.4e-277 958.7 952 54.5
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 1.7e-276 956.4 958 54.4
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 8.4e-276 954.1 955 54.0
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 1.4e-275 953.4 952 54.9
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 2.1e-274 949.5 950 53.6
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 6.0e-274 948.0 947 53.3
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 1.0e-273 947.2 1010 51.9
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 1.8e-273 946.4 947 54.5
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 2.3e-273 946.0 966 54.6
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 6.7e-273 944.5 994 52.1
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 2.5e-272 942.6 1026 51.9
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 1.3e-271 940.3 943 53.2
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 3.7e-271 938.7 1007 52.2
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 4.8e-271 938.3 1027 52.0
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 6.3e-271 937.9 1026 51.6
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 5.3e-270 934.9 950 53.6
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 3.4e-269 932.2 999 51.3
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 7.6e-269 931.0 1056 50.6
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 2.2e-268 929.5 595 82.7
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 9.4e-267 924.1 950 52.7
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 3.6e-266 922.2 946 53.2
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 3.0e-265 919.1 954 52.6
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 1.1e-264 917.1 955 52.8
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 1.1e-262 910.6 955 53.0
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 1.3e-260 903.7 941 53.5
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 1.4e-259 900.2 853 55.6
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 7.2e-259 897.9 880 56.1
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 6.7e-257 891.3 926 52.3
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 4.8e-255 885.2 1012 49.4
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 1.7e-252 876.7 1014 49.6
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 2.2e-252 876.3 791 58.9
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 1.4e-251 873.6 950 51.5
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 4.4e-248 862.1 964 47.7
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 1.5e-243 847.0 785 57.8
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 5.5e-243 845.1 789 57.0
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 1.4e-238 830.5 958 48.2
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 1.0e-236 824.3 951 48.8
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 7.2e-235 818.1 954 47.9
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 5.2e-225 785.4 956 46.8
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 2.5e-219 766.5 705 57.6
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 3.1e-209 733.0 756 52.9
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 2.2e-199 700.3 973 42.5
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 3.0e-196 689.9 648 57.7
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 4.9e-183 646.0 671 53.1
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 7.4e-171 605.5 699 47.1
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 1.1e-161 575.1 564 54.3
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 1.1e-150 538.5 552 53.3
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 1.2e-149 535.0 555 53.2
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 6.5e-143 512.7 589 49.9
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 4.7e-141 506.5 561 49.6
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 9.7e-139 498.8 907 37.3
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 5.0e-135 486.5 491 55.2
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 8.0e-133 479.2 527 49.9
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 3.3e-131 473.8 904 32.7
Os10g0492300 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 1.7e-130 471.5 469 56.7
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 5.9e-128 463.0 941 31.8
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 2.3e-116 424.5 617 41.2
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 1.1e-110 405.6 927 31.3
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 2.4e-97 361.3 577 39.9
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 1.0e-95 355.9 405 50.4
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 8.6e-87 326.2 319 52.4
HPP92_014542 Vanilla planifolia HOM05D003801 ORTHO05D004812 2.5e-86 324.7 342 52.3
Oeu050040.1 Olea europaea HOM05D003801 ORTHO05D004812 1.4e-76 292.4 285 56.1
Dinv12256 Davidia involucrata HOM05D003801 ORTHO05D004812 1.2e-75 289.3 271 55.7
QL05p055919 Quercus lobata HOM05D003801 ORTHO05D004812 1.4e-73 282.3 381 45.9
MBI07_g35968_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 1.2e-72 279.3 257 57.2
MBI15_g33038_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 2.1e-72 278.5 251 57.8
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 2.0e-67 261.9 564 32.1
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 8.4e-66 256.5 556 33.8
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 2.7e-64 251.5 265 49.4
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 1.9e-62 245.4 499 35.9
Lj6A615T90 Lonicera japonica HOM05D003801 ORTHO05D004812 2.1e-61 241.9 243 52.3
QL05p056751 Quercus lobata HOM05D003801 ORTHO05D004812 2.8e-61 241.5 278 49.3
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.1e-57 229.6 218 56.0
Hma1.2p1_0613F.1_g189200 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.8e-55 222.2 297 45.5
Actinidia23184 Actinidia chinensis HOM05D003801 ORTHO05D004812 9.6e-54 216.5 423 36.6
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 9.0e-52 209.9 240 49.6
arahy.Tifrunner.gnm1.ann1.WCY7KD Arachis hypogaea HOM05D003801 ORTHO05D004812 1.4e-49 202.6 186 55.9
PSO339G0950 Papaver somniferum HOM05D003801 ORTHO05D004812 1.1e-46 193.0 219 48.4
Hma1.2p1_1586F.1_g292110 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 4.3e-46 191.0 235 48.9
CDE07G0188 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.2e-43 183.0 225 48.4
Sabra19G0124600 Salix brachista HOM05D003801 ORTHO05D004812 7.2e-41 173.7 238 46.2
SHI19239 Sapria himalayana HOM05D003801 ORTHO05D004812 1.0e-39 169.9 254 41.3
CANSAT80G1859 Cannabis sativa HOM05D003801 ORTHO05D004812 3.9e-39 167.9 132 59.8
C01p22580 Brassica napus HOM05D003801 ORTHO05D017532 1.1e-38 166.4 415 32.5
BolC1t01884H Brassica oleracea HOM05D003801 ORTHO05D017532 1.6e-37 162.5 421 32.3
Os10g0492101 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 2.2e-37 162.2 177 61.0
CDE07G0464 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.2e-35 156.4 159 56.6
CDE07G0490 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.2e-35 156.4 558 27.6
Cc01_g14940 Coffea canephora HOM05D003801 ORTHO05D004812 2.7e-32 145.2 156 54.5
CSS0035288 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 2.5e-25 122.1 124 51.6
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 7.2e-25 120.6 111 55.9
C05p05050 Brassica napus HOM05D003801 ORTHO05D004812 7.2e-25 120.6 90 62.2
Glyma.11G162400 Glycine max HOM05D003801 ORTHO05D004812 5.1e-23 114.4 150 44.0
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 7.4e-22 110.5 101 54.5
AL1G16970 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.3e-21 109.8 74 68.9
AL1G17100 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.3e-21 109.8 74 68.9
SEGI_21560 Sequoiadendron giganteum HOM05D003801 ORTHO05D010437 1.7e-21 109.4 169 42.0
Cc01_g14920 Coffea canephora HOM05D003801 ORTHO05D004812 3.1e-20 105.1 194 40.7
VMungo1215G2313 Vigna mungo HOM05D003801 ORTHO05D004812 7.7e-19 100.5 228 34.6
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 2.9e-18 98.6 384 31.0
SHI19242 Sapria himalayana HOM05D003801 ORTHO05D004812 9.4e-17 93.6 117 40.2
BolC1t02191H Brassica oleracea HOM05D003801 ORTHO05D017532 9.7e-14 83.6 197 31.5
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 9.7e-14 83.6 76 53.9
Hma1.2p1_1586F.1_g292120 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 6.3e-13 80.9 112 46.4
COL.COLO4_07614 Corchorus olitorius HOM05D003801 ORTHO05D004812 1.2e-11 76.6 160 32.5
TAR629G1141 Trochodendron aralioides HOM05D000566 ORTHO05D000686 1.2e-11 76.6 72 52.8


User provided reference genes

Program Settings