Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb044830 Zea mays HOM05D006104 ORTHO05D008303 8.1e-225 783.5 416 100.0
PSO063G5766 Papaver somniferum HOM05D006104 ORTHO05D008303 1.1e-131 474.2 349 70.8
PGSC0003DMG400021455 Solanum tuberosum HOM05D006104 ORTHO05D008303 4.9e-129 465.3 362 66.6
Sopen02g011830 Solanum pennellii HOM05D006104 ORTHO05D008303 2.4e-128 463.0 353 67.1
Solyc02g036470.4 Solanum lycopersicum HOM05D006104 ORTHO05D008303 5.4e-128 461.8 363 66.4
FvH4_5g39720 Fragaria vesca HOM05D006104 ORTHO05D008303 1.6e-127 460.3 351 66.7
Rhsim10G0186700 Rhododendron simsii HOM05D006104 ORTHO05D008303 2.7e-127 459.5 349 69.3
SGA_v2.0_scaffold199G41251 Striga asiatica HOM05D006104 ORTHO05D008303 2.7e-127 459.5 353 68.3
FAN18G3652 Fragaria x ananassa HOM05D006104 ORTHO05D008303 4.6e-127 458.8 351 66.7
Aa31LG5G13170 Aethionema arabicum HOM05D006104 ORTHO05D008303 1.0e-126 457.6 384 63.3
Nitab4.5_0002297g0090 Nicotiana tabacum HOM05D006104 ORTHO05D008303 1.0e-126 457.6 368 66.0
Cpa.g.sc108.21 Carica papaya HOM05D006104 ORTHO05D008303 6.6e-126 454.9 349 67.3
Nitab4.5_0008083g0020 Nicotiana tabacum HOM05D006104 ORTHO05D008303 6.6e-126 454.9 382 63.4
RcHm_v2.0_Chr7g0242021 Rosa chinensis HOM05D006104 ORTHO05D008303 6.6e-126 454.9 353 67.1
Dinv19095 Davidia involucrata HOM05D006104 ORTHO05D008303 3.3e-125 452.6 376 65.4
Peaxi162Scf00784g00028 Petunia axillaris HOM05D006104 ORTHO05D008303 9.5e-125 451.1 346 69.7
Hund22221 Selenicereus undatus HOM05D006104 ORTHO05D008303 1.2e-124 450.7 366 64.5
Gohir.D12G051700 Gossypium hirsutum HOM05D006104 ORTHO05D008303 1.6e-124 450.3 345 68.1
Gorai.008G055000 Gossypium raimondii HOM05D006104 ORTHO05D008303 1.6e-124 450.3 345 68.1
MBI06_g37978_MAGBIO Magnolia biondii HOM05D006104 ORTHO05D008303 2.1e-124 449.9 409 61.9
MSTRG.15618 Avicennia marina HOM05D006104 ORTHO05D008303 2.8e-124 449.5 364 66.2
ClCG01G008400 Citrullus lanatus HOM05D006104 ORTHO05D008303 4.7e-124 448.7 347 67.4
Thecc.04G056600 Theobroma cacao HOM05D006104 ORTHO05D008303 4.7e-124 448.7 345 66.4
CDE04G1404 Ceratophyllum demersum HOM05D006104 ORTHO05D008303 6.2e-124 448.4 348 67.2
BolC1t05884H Brassica oleracea HOM05D006104 ORTHO05D008303 8.1e-124 448.0 345 67.8
CANSAT78G2105 Cannabis sativa HOM05D006104 ORTHO05D008303 8.1e-124 448.0 347 66.9
TAR371G0041 Trochodendron aralioides HOM05D006104 ORTHO05D008303 8.1e-124 448.0 375 64.3
Duzib138G0961 Durio zibethinus HOM05D006104 ORTHO05D008303 1.1e-123 447.6 345 66.4
Cfa008019 Carpinus fangiana HOM05D006104 ORTHO05D008303 1.4e-123 447.2 353 66.3
Lsat_1_v5_gn_8_114940 Lactuca sativa HOM05D006104 ORTHO05D008303 1.8e-123 446.8 367 64.0
ATR0124G053 Amborella trichopoda HOM05D006104 ORTHO05D008303 2.3e-123 446.4 346 66.8
Oeu058858.1 Olea europaea HOM05D006104 ORTHO05D008303 3.1e-123 446.0 291 75.6
Sp3g01720 Schrenkiella parvula HOM05D006104 ORTHO05D008303 3.1e-123 446.0 388 62.1
Haze_14041 Corylus avellana HOM05D006104 ORTHO05D008303 4.0e-123 445.7 352 66.5
THA.LOC104820927 Tarenaya hassleriana HOM05D006104 ORTHO05D008303 4.0e-123 445.7 388 63.7
arahy.Tifrunner.gnm1.ann1.B0P6V2 Arachis hypogaea HOM05D006104 ORTHO05D008303 5.2e-123 445.3 352 66.5
Thhalv10020801m.g Eutrema salsugineum HOM05D006104 ORTHO05D008303 5.2e-123 445.3 383 62.9
Potri.012G145300 Populus trichocarpa HOM05D006104 ORTHO05D008303 5.2e-123 445.3 357 66.4
arahy.Tifrunner.gnm1.ann1.W9ZMNH Arachis hypogaea HOM05D006104 ORTHO05D008303 6.8e-123 444.9 352 66.2
Carub.0003s0179 Capsella rubella HOM05D006104 ORTHO05D008303 8.9e-123 444.5 382 62.6
CARHR076690 Cardamine hirsuta HOM05D006104 ORTHO05D008303 8.9e-123 444.5 384 62.2
Migut.K01201 Erythranthe guttata HOM05D006104 ORTHO05D008303 1.2e-122 444.1 367 65.4
BNapus_Darmor_BZH_scaffold_122p00170 Brassica napus HOM05D006104 ORTHO05D008303 1.5e-122 443.7 384 62.8
PGR042G1876 Punica granatum HOM05D006104 ORTHO05D008303 3.4e-122 442.6 357 65.8
TWI74G1645 Tripterygium wilfordii HOM05D006104 ORTHO05D008303 3.4e-122 442.6 345 67.8
BraA01t04624Z Brassica rapa HOM05D006104 ORTHO05D008303 4.4e-122 442.2 386 62.4
HPP92_022205 Vanilla planifolia HOM05D006104 ORTHO05D008303 4.4e-122 442.2 398 62.3
AL3G12080 Arabidopsis lyrata HOM05D006104 ORTHO05D008303 5.8e-122 441.8 345 66.4
CiPaw.03G009900 Carya illinoinensis HOM05D006104 ORTHO05D008303 7.6e-122 441.4 351 65.8
MD09G1187600 Malus domestica HOM05D006104 ORTHO05D008303 9.9e-122 441.0 349 65.9
QL02p055508 Quercus lobata HOM05D006104 ORTHO05D008303 1.7e-121 440.3 293 75.1
DCAR_003391 Daucus carota HOM05D006104 ORTHO05D008303 2.9e-121 439.5 298 73.5
Ah.06g191390 Amaranthus hybridus HOM05D006104 ORTHO05D008303 4.9e-121 438.7 346 63.6
ECA232G1605 Erigeron canadensis HOM05D006104 ORTHO05D008303 1.1e-120 437.6 400 58.5
Glyma.18G047900 Glycine max HOM05D006104 ORTHO05D008303 1.4e-120 437.2 370 63.2
Glyma.11G202900 Glycine max HOM05D006104 ORTHO05D008303 2.4e-120 436.4 410 59.8
Ciclev10011871m.g Citrus clementina HOM05D006104 ORTHO05D008303 3.2e-120 436.0 351 64.4
HanXRQChr15g0486461 Helianthus annuus HOM05D006104 ORTHO05D008303 3.2e-120 436.0 359 63.5
AT3G02690 Arabidopsis thaliana HOM05D006104 ORTHO05D008303 1.2e-119 434.1 345 65.5
AUR62037537 Chenopodium quinoa HOM05D006104 ORTHO05D008303 1.2e-119 434.1 408 57.6
Atru.chr1.2189 Acer truncatum HOM05D006104 ORTHO05D008303 4.6e-119 432.2 293 73.0
Lj6g0001971 Lotus japonicus HOM05D006104 ORTHO05D008303 2.3e-118 429.9 395 61.5
Aqoxy3G04351 Aquilegia oxysepala HOM05D006104 ORTHO05D008303 3.9e-118 429.1 354 63.0
EL10Ac1g01448 Beta vulgaris HOM05D006104 ORTHO05D008303 1.1e-117 427.6 347 62.2
Nn4g25028 Nelumbo nucifera HOM05D006104 ORTHO05D008303 3.3e-117 426.0 376 63.3
FAN08G3450 Fragaria x ananassa HOM05D006104 ORTHO05D008303 4.3e-117 425.6 430 54.4
AagrBONN_evm.TU.Sc2ySwM_368.1984 Anthoceros agrestis HOM05D006104 ORTHO05D008303 9.6e-117 424.5 392 62.8
AUR62035547 Chenopodium quinoa HOM05D006104 ORTHO05D008303 1.2e-116 424.1 414 56.3
Medtr3g063240 Medicago truncatula HOM05D006104 ORTHO05D008303 2.8e-116 422.9 316 68.0
Ca_15100_v3 Cicer arietinum L. HOM05D006104 ORTHO05D008303 4.7e-116 422.2 355 63.7
Eucgr.J01650 Eucalyptus grandis HOM05D006104 ORTHO05D008303 3.1e-115 419.5 398 58.0
CAN.G304.9 Capsicum annuum HOM05D006104 ORTHO05D008303 2.6e-114 416.4 371 60.4
Medtr3g063250 Medicago truncatula HOM05D006104 ORTHO05D008303 2.6e-114 416.4 346 62.7
Phvul.006G083500 Phaseolus vulgaris HOM05D006104 ORTHO05D008303 3.4e-114 416.0 359 61.3
Sabra12G0109100 Salix brachista HOM05D006104 ORTHO05D008303 3.4e-114 416.0 401 58.4
GSVIVG01033198001 Vitis vinifera HOM05D006104 ORTHO05D008303 3.4e-114 416.0 275 74.9
Actinidia32997 Actinidia chinensis HOM05D006104 ORTHO05D008303 1.3e-113 414.1 345 64.9
Gohir.A12G053200 Gossypium hirsutum HOM05D006104 ORTHO05D008303 1.9e-112 410.2 316 69.3
Lj4A249G56 Lonicera japonica HOM05D006104 ORTHO05D008303 6.0e-111 405.2 261 77.8
Cc07_g12610 Coffea canephora HOM05D006104 ORTHO05D008303 7.8e-111 404.8 276 73.6
VMungo0540G0919 Vigna mungo HOM05D006104 ORTHO05D008303 2.5e-109 399.8 382 58.4
SMO364G0667 Selaginella moellendorffii HOM05D006104 ORTHO05D008303 4.8e-108 395.6 368 60.1
Pp3c19_6070 Physcomitrium patens HOM05D006104 ORTHO05D008303 6.2e-108 395.2 370 57.3
Lalb_Chr18g0053941 Lupinus albus HOM05D006104 ORTHO05D008303 2.6e-106 389.8 352 58.2
MELO3C025108.2 Cucumis melo HOM05D006104 ORTHO05D008303 2.9e-105 386.3 495 47.7
Sc09g0004650 Simmondsia chinensis HOM05D006104 ORTHO05D008303 2.9e-105 386.3 321 63.2
BNapus_Darmor_BZH_scaffold_99p00200 Brassica napus HOM05D006104 ORTHO05D008303 1.1e-104 384.4 261 73.9
Mapoly0068s0059 Marchantia polymorpha HOM05D006104 ORTHO05D008303 1.6e-103 380.6 320 62.5
unitig_748.g7253 Utricularia gibba HOM05D006104 ORTHO05D008303 3.0e-102 376.3 351 60.7
FAN04G1807 Fragaria x ananassa HOM05D006104 ORTHO05D008303 3.1e-99 366.3 451 48.3
SalBow5G0256 Salvia bowleyana HOM05D006104 ORTHO05D008303 1.7e-97 360.5 368 56.8
CBR_g22386 Chara braunii HOM05D006104 ORTHO05D008303 1.2e-95 354.4 399 52.4
EL10Ac4g08870 Beta vulgaris HOM05D006104 ORTHO05D008303 3.0e-94 349.7 242 70.2
MCO16G393 Micromonas commoda HOM05D006104 ORTHO05D008303 2.1e-92 343.6 365 54.0
vmacro20444 Vaccinium macrocarpon HOM05D006104 ORTHO05D008303 2.0e-90 337.0 316 58.5
CSS0044834 Camellia sinensis var. sinensis HOM05D006104 ORTHO05D008303 4.2e-88 329.3 287 60.6
Hma1.2p1_0085F.1_g043890 Hydrangea macrophylla HOM05D006104 ORTHO05D008303 1.0e-86 324.7 361 54.3
Cre12.g507950 Chlamydomonas reinhardtii HOM05D006104 ORTHO05D008303 1.9e-80 303.9 390 48.5
PRCOL_00000403 Prasinoderma coloniale HOM05D006104 ORTHO05D008303 4.2e-80 302.8 295 59.7
Pp3c7_24690 Physcomitrium patens HOM05D006104 ORTHO05D008303 1.5e-77 294.3 320 48.4
CsaV3_5G024350 Cucumis sativus L. HOM05D006104 ORTHO05D008303 4.3e-77 292.7 243 64.2
Os10g0493900 Oryza sativa ssp. japonica HOM05D006104 ORTHO05D008303 1.3e-76 291.2 161 90.1
Prupe.8G267800 Prunus persica HOM05D006104 ORTHO05D008303 1.6e-76 290.8 239 63.6
Manes.01G125800 Manihot esculenta HOM05D006104 ORTHO05D008303 2.2e-76 290.4 296 56.4
COL.COLO4_13439 Corchorus olitorius HOM05D006104 ORTHO05D008303 5.9e-74 282.3 238 63.9
Sed0008277 Sechium edule HOM05D006104 ORTHO05D008303 1.0e-73 281.6 295 56.6
SEGI_11411 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 1.4e-72 277.7 265 58.5
TPR.G37386 Trifolium pratense HOM05D006104 ORTHO05D008303 5.9e-66 255.8 199 64.8
QL02p056562 Quercus lobata HOM05D006104 ORTHO05D008303 1.1e-61 241.5 160 70.6
SEGI_16808 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 2.2e-57 227.3 150 74.0
TPR.G14061 Trifolium pratense HOM05D006104 ORTHO05D008303 1.0e-49 201.8 189 61.9
arahy.Tifrunner.gnm1.ann1.4P08NV Arachis hypogaea HOM05D006104 ORTHO05D008303 6.3e-44 182.6 207 52.7
Psat5g144680 Pisum sativum HOM05D006104 ORTHO05D008303 3.4e-37 160.2 152 58.6
BraA02t04668Z Brassica rapa HOM05D006104 ORTHO05D008303 1.1e-27 128.6 136 53.7
arahy.Tifrunner.gnm1.ann1.2Q0DPQ Arachis hypogaea HOM05D006104 ORTHO05D008303 1.6e-23 114.8 111 56.8
Psat5g144720 Pisum sativum HOM05D006104 ORTHO05D008303 4.0e-22 110.2 107 52.3
arahy.Tifrunner.gnm1.ann1.LG1UYC Arachis hypogaea HOM05D006104 ORTHO05D008303 8.9e-22 109.0 111 54.1
Psat0s2701g0160 Pisum sativum HOM05D006104 ORTHO05D000113 3.9e-17 93.6 90 55.6
arahy.Tifrunner.gnm1.ann1.12AD17 Arachis hypogaea HOM05D000052 ORTHO05D000046 2.5e-16 90.9 61 72.1
Cpa.g.c43318 Carica papaya HOM05D006104 ORTHO05D117575 7.3e-16 89.4 257 30.7
Psat7g173760 Pisum sativum HOM05D006104 ORTHO05D008303 1.5e-13 81.6 103 49.5
Psat5g203840 Pisum sativum HOM05D006104 ORTHO05D324349 2.3e-09 67.8 158 39.9
Ca_29260_v3 Cicer arietinum L. HOM05D006104 ORTHO05D149040 4.3e-08 63.5 283 23.3
Psat4g208480 Pisum sativum HOM05D006104 ORTHO05D008303 2.1e-07 61.2 34 79.4
Psat4g208520 Pisum sativum HOM05D006104 ORTHO05D008303 8.9e-06 55.8 63 50.8


User provided reference genes

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