Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb044470 Zea mays HOM05D007014 ORTHO05D008894 1.2e-86 323.2 163 100.0
Zm00001eb044400 Zea mays HOM05D007014 ORTHO05D008894 2.7e-83 312.0 163 97.5
Os10g0500400 Oryza sativa ssp. japonica HOM05D007014 ORTHO05D008894 1.2e-54 216.9 175 66.3
Potri.013G134102 Populus trichocarpa HOM05D007014 ORTHO05D008894 1.8e-47 193.0 151 62.9
Potri.013G134000 Populus trichocarpa HOM05D007014 ORTHO05D008894 3.1e-47 192.2 151 62.9
Sed0017748 Sechium edule HOM05D007014 ORTHO05D008894 7.0e-47 191.0 153 61.4
Dinv02170 Davidia involucrata HOM05D007014 ORTHO05D008894 9.1e-47 190.7 151 62.3
Haze_13147 Corylus avellana HOM05D007014 ORTHO05D008894 1.2e-46 190.3 138 65.2
Sabra13G0113800 Salix brachista HOM05D007014 ORTHO05D008894 1.2e-46 190.3 151 62.3
Cfa014594 Carpinus fangiana HOM05D007014 ORTHO05D008894 2.6e-46 189.1 151 61.6
Carub.0001s0276 Capsella rubella HOM05D007014 ORTHO05D008894 3.5e-46 188.7 151 62.3
CSS0024097 Camellia sinensis var. sinensis HOM05D007014 ORTHO05D008894 5.9e-46 188.0 151 60.3
Hma1.2p1_1201F.1_g266700 Hydrangea macrophylla HOM05D007014 ORTHO05D008894 5.9e-46 188.0 138 66.7
ClCG02G017580 Citrullus lanatus HOM05D007014 ORTHO05D008894 7.7e-46 187.6 153 60.8
Rhsim04G0068000 Rhododendron simsii HOM05D007014 ORTHO05D008894 7.7e-46 187.6 152 59.9
AT1G03650 Arabidopsis thaliana HOM05D007014 ORTHO05D008894 1.0e-45 187.2 151 60.9
Nn1g06593 Nelumbo nucifera HOM05D007014 ORTHO05D008894 1.0e-45 187.2 156 61.5
CARHR002980 Cardamine hirsuta HOM05D007014 ORTHO05D008894 1.7e-45 186.4 151 61.6
AL1G13150 Arabidopsis lyrata HOM05D007014 ORTHO05D008894 2.9e-45 185.7 151 60.9
MELO3C024591.2 Cucumis melo HOM05D007014 ORTHO05D008894 5.0e-45 184.9 153 60.1
PGSC0003DMG400007868 Solanum tuberosum HOM05D007014 ORTHO05D008894 6.5e-45 184.5 151 62.3
vmacro09278 Vaccinium macrocarpon HOM05D007014 ORTHO05D008894 6.5e-45 184.5 151 58.3
Aa31LG1G20970 Aethionema arabicum HOM05D007014 ORTHO05D008894 8.5e-45 184.1 151 58.9
BcaC07g42241 Brassica carinata HOM05D007014 ORTHO05D008894 8.5e-45 184.1 151 60.9
PGSC0003DMG400007866 Solanum tuberosum HOM05D007014 ORTHO05D008894 8.5e-45 184.1 151 61.6
THA.LOC104801176 Tarenaya hassleriana HOM05D007014 ORTHO05D008894 8.5e-45 184.1 151 60.3
FvH4_2g15130 Fragaria vesca HOM05D007014 ORTHO05D008894 1.1e-44 183.7 151 58.9
Nitab4.5_0003022g0100 Nicotiana tabacum HOM05D007014 ORTHO05D008894 1.1e-44 183.7 151 60.9
SalBow1G7232 Salvia bowleyana HOM05D007014 ORTHO05D008894 1.1e-44 183.7 152 59.2
MBI17_g43194_MAGBIO Magnolia biondii HOM05D007014 ORTHO05D008894 1.5e-44 183.3 147 57.8
Cc05_g06870 Coffea canephora HOM05D007014 ORTHO05D008894 3.2e-44 182.2 151 60.3
Thhalv10008981m.g Eutrema salsugineum HOM05D007014 ORTHO05D008894 3.2e-44 182.2 151 60.3
GSVIVG01030373001 Vitis vinifera HOM05D007014 ORTHO05D008894 3.2e-44 182.2 151 59.6
HanXRQChr17g0553541 Helianthus annuus HOM05D007014 ORTHO05D008894 4.2e-44 181.8 153 57.5
CAN.G486.11 Capsicum annuum HOM05D007014 ORTHO05D008894 5.5e-44 181.4 151 60.9
MD09G1249800 Malus domestica HOM05D007014 ORTHO05D008894 5.5e-44 181.4 157 56.7
QL08p038417 Quercus lobata HOM05D007014 ORTHO05D008894 5.5e-44 181.4 151 59.6
Sp1g02550 Schrenkiella parvula HOM05D007014 ORTHO05D008894 5.5e-44 181.4 151 58.3
TWI36G0686 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 9.4e-44 180.6 151 57.0
RcHm_v2.0_Chr6g0277731 Rosa chinensis HOM05D007014 ORTHO05D008894 1.2e-43 180.3 151 58.3
TPR.G21768 Trifolium pratense HOM05D007014 ORTHO05D008894 1.2e-43 180.3 151 62.3
Prupe.3G155400 Prunus persica HOM05D007014 ORTHO05D008894 3.6e-43 178.7 151 57.6
COL.COLO4_07554 Corchorus olitorius HOM05D007014 ORTHO05D008894 4.7e-43 178.3 151 56.3
Peaxi162Scf02133g00022 Petunia axillaris HOM05D007014 ORTHO05D008894 4.7e-43 178.3 151 58.9
BcaC07g42236 Brassica carinata HOM05D007014 ORTHO05D008894 6.1e-43 177.9 150 58.7
Manes.12G090900 Manihot esculenta HOM05D007014 ORTHO05D008894 8.0e-43 177.6 151 57.0
Thecc.02G177900 Theobroma cacao HOM05D007014 ORTHO05D008894 1.0e-42 177.2 151 57.0
FAN27G2134 Fragaria x ananassa HOM05D007014 ORTHO05D008894 1.4e-42 176.8 151 57.6
Lj8A113T47 Lonicera japonica HOM05D007014 ORTHO05D008894 2.3e-42 176.0 149 59.1
HPP92_002954 Vanilla planifolia HOM05D007014 ORTHO05D008894 3.0e-42 175.6 154 56.5
PSO210G2618 Papaver somniferum HOM05D007014 ORTHO05D008894 4.0e-42 175.3 151 57.0
Sopen12g005310 Solanum pennellii HOM05D007014 ORTHO05D008894 4.0e-42 175.3 151 59.6
BcaC07g42250 Brassica carinata HOM05D007014 ORTHO05D008894 5.2e-42 174.9 155 57.4
C08p52830 Brassica napus HOM05D007014 ORTHO05D008894 5.2e-42 174.9 155 57.4
Cpa.g.sc34.144 Carica papaya HOM05D007014 ORTHO05D008894 6.8e-42 174.5 149 58.4
Ca_28202_v3 Cicer arietinum L. HOM05D007014 ORTHO05D008894 6.8e-42 174.5 151 58.9
Phvul.011G117200 Phaseolus vulgaris HOM05D007014 ORTHO05D008894 6.8e-42 174.5 152 59.9
Solyc12g010680.3 Solanum lycopersicum HOM05D007014 ORTHO05D008894 8.8e-42 174.1 151 60.3
Aqoxy4G01010 Aquilegia oxysepala HOM05D007014 ORTHO05D008894 1.2e-41 173.7 153 53.6
PSO832G4125 Papaver somniferum HOM05D007014 ORTHO05D008894 1.5e-41 173.3 151 57.0
BraA09t42163Z Brassica rapa HOM05D007014 ORTHO05D008894 2.0e-41 172.9 139 61.9
CDE02G4296 Ceratophyllum demersum HOM05D007014 ORTHO05D008894 2.0e-41 172.9 151 55.6
Ciclev10022606m.g Citrus clementina HOM05D007014 ORTHO05D008894 2.6e-41 172.6 151 56.3
FAN15G2141 Fragaria x ananassa HOM05D007014 ORTHO05D008894 2.6e-41 172.6 149 57.0
SGA_v2.0_scaffold307G48064 Striga asiatica HOM05D007014 ORTHO05D008894 2.6e-41 172.6 149 59.1
Glyma.12G111800 Glycine max HOM05D007014 ORTHO05D008894 3.4e-41 172.2 139 61.2
Lj3g0024821 Lotus japonicus HOM05D007014 ORTHO05D008894 4.4e-41 171.8 151 58.9
Medtr4g046047 Medicago truncatula HOM05D007014 ORTHO05D008894 4.4e-41 171.8 151 59.6
arahy.Tifrunner.gnm1.ann1.UXPW02 Arachis hypogaea HOM05D007014 ORTHO05D008894 5.7e-41 171.4 152 54.6
TAR629G1268 Trochodendron aralioides HOM05D007014 ORTHO05D008894 5.7e-41 171.4 151 55.6
BolC8t52799H Brassica oleracea HOM05D007014 ORTHO05D008894 7.5e-41 171.0 139 61.9
ATR0680G283 Amborella trichopoda HOM05D007014 ORTHO05D008894 9.7e-41 170.6 151 52.3
Duzib052G1001 Durio zibethinus HOM05D007014 ORTHO05D008894 9.7e-41 170.6 152 56.6
Gohir.D13G066000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 9.7e-41 170.6 151 55.0
Gorai.013G075300 Gossypium raimondii HOM05D007014 ORTHO05D008894 9.7e-41 170.6 151 55.0
arahy.Tifrunner.gnm1.ann1.YPG8JQ Arachis hypogaea HOM05D007014 ORTHO05D008894 1.3e-40 170.2 152 55.3
BcaC07g42259 Brassica carinata HOM05D007014 ORTHO05D008894 1.7e-40 169.9 155 57.4
unitig_21.g20401 Utricularia gibba HOM05D007014 ORTHO05D008894 1.7e-40 169.9 139 59.7
CANSAT78G1474 Cannabis sativa HOM05D007014 ORTHO05D008894 2.2e-40 169.5 151 55.6
Migut.H01076 Erythranthe guttata HOM05D007014 ORTHO05D008894 2.2e-40 169.5 157 54.8
Oeu029922.1 Olea europaea HOM05D007014 ORTHO05D008894 2.2e-40 169.5 151 54.3
arahy.Tifrunner.gnm1.ann1.1ZYA2W Arachis hypogaea HOM05D007014 ORTHO05D008894 3.7e-40 168.7 152 54.6
MSTRG.12316 Avicennia marina HOM05D007014 ORTHO05D008894 6.3e-40 167.9 160 55.6
FAN24G2354 Fragaria x ananassa HOM05D007014 ORTHO05D008894 1.8e-39 166.4 151 53.6
Ciclev10022631m.g Citrus clementina HOM05D007014 ORTHO05D008894 2.4e-39 166.0 151 55.0
CsaV3_6G013010 Cucumis sativus L. HOM05D007014 ORTHO05D008894 2.4e-39 166.0 163 52.1
Glyma.06G293600 Glycine max HOM05D007014 ORTHO05D008894 4.1e-39 165.2 139 59.0
Nitab4.5_0002575g0020 Nicotiana tabacum HOM05D007014 ORTHO05D008894 5.3e-39 164.9 167 51.5
Psat7g157760 Pisum sativum HOM05D007014 ORTHO05D008894 5.3e-39 164.9 151 58.3
Gohir.A13G056000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 9.1e-39 164.1 151 53.0
EL10Ac9g20747 Beta vulgaris HOM05D007014 ORTHO05D008894 1.6e-38 163.3 151 53.6
CiPaw.03G175500 Carya illinoinensis HOM05D007014 ORTHO05D008894 2.7e-38 162.5 136 58.8
Mapoly0101s0002 Marchantia polymorpha HOM05D007014 ORTHO05D008894 7.7e-38 161.0 151 56.3
Sc21g0002660 Simmondsia chinensis HOM05D007014 ORTHO05D008894 2.2e-37 159.5 151 53.0
arahy.Tifrunner.gnm1.ann1.THUB96 Arachis hypogaea HOM05D007014 ORTHO05D008894 1.6e-35 153.3 141 53.9
ECA233G3399 Erigeron canadensis HOM05D007880 ORTHO05D003386 8.0e-35 151.0 136 53.7
AagrBONN_evm.TU.Sc2ySwM_344.4393 Anthoceros agrestis HOM05D007014 ORTHO05D008894 1.0e-34 150.6 150 52.7
Lsat_1_v5_gn_8_133041 Lactuca sativa HOM05D007014 ORTHO05D008894 3.0e-34 149.1 138 52.9
VMungo1127G0420 Vigna mungo HOM05D007014 ORTHO05D008894 3.0e-34 149.1 175 49.1
TWI36G1550 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 4.1e-31 138.7 151 44.4
Actinidia30478 Actinidia chinensis HOM05D007014 ORTHO05D008894 5.9e-30 134.8 96 65.6
Lsat_1_v5_gn_8_132641 Lactuca sativa HOM05D007014 ORTHO05D008894 9.5e-28 127.5 88 64.8
A09p68280 Brassica napus HOM05D001041 ORTHO05D000846 3.7e-24 115.5 92 60.9
C08p52730 Brassica napus HOM05D007014 ORTHO05D008894 4.9e-24 115.2 93 60.2
Lalb_Chr01g0005301 Lupinus albus HOM05D007014 ORTHO05D008894 4.9e-24 115.2 88 63.6
QL12p004320 Quercus lobata HOM05D007014 ORTHO05D008894 5.6e-20 101.7 74 60.8
PRCOL_00005877 Prasinoderma coloniale HOM05D007014 ORTHO05D008894 3.2e-15 85.9 95 49.5
AUR62037369 Chenopodium quinoa HOM05D007014 ORTHO05D008894 7.8e-14 81.3 70 55.7
Sabra13G0113700 Salix brachista HOM05D000264 ORTHO05D000152 2.3e-13 79.7 79 54.4
Ciclev10023600m.g Citrus clementina HOM05D007014 ORTHO05D008894 3.9e-13 79.0 79 51.9
Sabra11G0072100 Salix brachista HOM05D000036 ORTHO05D000095 6.6e-13 78.2 79 51.9
Sabra15G0066900 Salix brachista HOM05D000036 ORTHO05D000095 6.6e-13 78.2 79 51.9
Hund01169 Selenicereus undatus HOM05D007014 ORTHO05D008894 1.9e-12 76.6 122 41.8
DCAR_013001 Daucus carota HOM05D007014 ORTHO05D008894 4.3e-12 75.5 81 50.6
Pp3c2_27490 Physcomitrium patens HOM05D007014 ORTHO05D008894 4.4e-09 65.5 109 44.0
MELO3C013609.2 Cucumis melo HOM05D007014 ORTHO05D008894 9.8e-09 64.3 65 49.2
Cre17.g705950 Chlamydomonas reinhardtii HOM05D007014 ORTHO05D008894 3.7e-08 62.4 127 32.3
SalBow1G7442 Salvia bowleyana HOM05D007014 ORTHO05D008894 1.6e-06 57.0 49 49.0


User provided reference genes

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