Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb044440 Zea mays HOM05D002505 ORTHO05D007115 1.2e-115 419.9 214 100.0
Zm00001eb021220 Zea mays HOM05D002505 ORTHO05D007115 2.5e-76 289.3 164 93.3
Os10g0520700 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D007115 4.0e-58 228.8 190 69.5
MBI04_g06931_MAGBIO Magnolia biondii HOM05D002505 ORTHO05D007115 4.3e-44 182.2 154 61.0
TAR375G0040 Trochodendron aralioides HOM05D002505 ORTHO05D007115 9.5e-44 181.0 135 65.9
Nn4g26685 Nelumbo nucifera HOM05D002505 ORTHO05D007115 1.5e-41 173.7 170 54.7
CSS0047752 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D007115 2.0e-41 173.3 150 58.7
Aqoxy5G02423 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 7.5e-41 171.4 150 60.0
AUR62007033 Chenopodium quinoa HOM05D002505 ORTHO05D007115 7.5e-41 171.4 153 58.8
Atru.chr5.482 Acer truncatum HOM05D002505 ORTHO05D007115 1.7e-40 170.2 150 59.3
CiPaw.11G114300 Carya illinoinensis HOM05D002505 ORTHO05D007115 1.7e-40 170.2 150 57.3
Nitab4.5_0005042g0030 Nicotiana tabacum HOM05D002505 ORTHO05D007115 1.7e-40 170.2 163 58.9
AUR62019897 Chenopodium quinoa HOM05D002505 ORTHO05D007115 2.2e-40 169.9 137 62.8
Aqoxy5G01632 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 2.9e-40 169.5 150 59.3
Lsat_1_v5_gn_6_9040 Lactuca sativa HOM05D002505 ORTHO05D007115 2.9e-40 169.5 154 59.1
Nitab4.5_0002728g0050 Nicotiana tabacum HOM05D002505 ORTHO05D007115 3.7e-40 169.1 149 61.1
Solyc08g082960.3 Solanum lycopersicum HOM05D002505 ORTHO05D007115 3.7e-40 169.1 149 60.4
Sopen08g031180 Solanum pennellii HOM05D002505 ORTHO05D007115 3.7e-40 169.1 149 60.4
Haze_09143 Corylus avellana HOM05D002505 ORTHO05D007115 6.4e-40 168.3 172 55.2
Glyma.04G232000 Glycine max HOM05D002505 ORTHO05D007115 6.4e-40 168.3 145 58.6
SalBow6G5481 Salvia bowleyana HOM05D002505 ORTHO05D007115 8.3e-40 167.9 151 62.9
QL02p027659 Quercus lobata HOM05D002505 ORTHO05D007115 1.4e-39 167.2 150 59.3
GSVIVG01019628001 Vitis vinifera HOM05D002505 ORTHO05D007115 1.4e-39 167.2 150 59.3
Ca_12555_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 2.4e-39 166.4 146 58.9
Manes.02G004600 Manihot esculenta HOM05D002505 ORTHO05D007115 2.4e-39 166.4 136 62.5
PSO339G4385 Papaver somniferum HOM05D002505 ORTHO05D007115 2.4e-39 166.4 152 54.6
Psat6g045400 Pisum sativum HOM05D002505 ORTHO05D007115 2.4e-39 166.4 169 53.8
TPR.G36929 Trifolium pratense HOM05D002505 ORTHO05D007115 2.4e-39 166.4 147 59.2
Thecc.03G223700 Theobroma cacao HOM05D002505 ORTHO05D007115 3.2e-39 166.0 138 60.1
HanXRQChr02g0047181 Helianthus annuus HOM05D002505 ORTHO05D007115 4.1e-39 165.6 154 57.8
Lalb_Chr17g0338531 Lupinus albus HOM05D002505 ORTHO05D007115 4.1e-39 165.6 165 53.9
arahy.Tifrunner.gnm1.ann1.31YZJ9 Arachis hypogaea HOM05D002505 ORTHO05D007115 5.4e-39 165.2 146 59.6
MSTRG.2011 Avicennia marina HOM05D002505 ORTHO05D007115 5.4e-39 165.2 173 53.2
Cfa011943 Carpinus fangiana HOM05D002505 ORTHO05D007115 5.4e-39 165.2 156 57.1
Medtr1g032200 Medicago truncatula HOM05D002505 ORTHO05D007115 5.4e-39 165.2 147 59.2
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 7.0e-39 164.9 150 58.0
CANSAT21G2418 Cannabis sativa HOM05D002505 ORTHO05D007115 9.2e-39 164.5 148 57.4
Cc00_g23270 Coffea canephora HOM05D002505 ORTHO05D007115 9.2e-39 164.5 162 54.3
Oeu010746.1 Olea europaea HOM05D002505 ORTHO05D007115 9.2e-39 164.5 149 57.7
PSO384G5034 Papaver somniferum HOM05D002505 ORTHO05D007115 1.2e-38 164.1 169 52.1
arahy.Tifrunner.gnm1.ann1.Y3P1ER Arachis hypogaea HOM05D002505 ORTHO05D007115 1.6e-38 163.7 146 59.6
Cpa.g.sc175.6 Carica papaya HOM05D002505 ORTHO05D007115 1.6e-38 163.7 128 64.8
Phvul.009G039500 Phaseolus vulgaris HOM05D002505 ORTHO05D007115 2.0e-38 163.3 148 56.8
TWI60G0007 Tripterygium wilfordii HOM05D002505 ORTHO05D007115 2.0e-38 163.3 159 56.6
ATR0757G152 Amborella trichopoda HOM05D002505 ORTHO05D007115 3.5e-38 162.5 157 55.4
Glyma.06G132900 Glycine max HOM05D002505 ORTHO05D007115 3.5e-38 162.5 153 55.6
VMungo1309G3079 Vigna mungo HOM05D002505 ORTHO05D007115 4.6e-38 162.2 146 56.8
Dinv11454 Davidia involucrata HOM05D002505 ORTHO05D007115 7.8e-38 161.4 150 56.7
Medtr5g025880 Medicago truncatula HOM05D002505 ORTHO05D007115 7.8e-38 161.4 148 56.1
PSO017G1033 Papaver somniferum HOM05D002505 ORTHO05D007115 7.8e-38 161.4 156 53.2
SEGI_04382 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 7.8e-38 161.4 152 57.2
LjContig00141g0018407 Lotus japonicus HOM05D002505 ORTHO05D007115 3.0e-37 159.5 178 51.1
Eucgr.D01694 Eucalyptus grandis HOM05D002505 ORTHO05D007115 3.9e-37 159.1 153 58.8
Migut.J00879 Erythranthe guttata HOM05D002505 ORTHO05D007115 5.0e-37 158.7 151 55.6
unitig_22.g5105 Utricularia gibba HOM05D002505 ORTHO05D007115 8.6e-37 157.9 150 56.0
COL.COLO4_10772 Corchorus olitorius HOM05D002505 ORTHO05D007115 1.1e-36 157.5 164 52.4
Lalb_Chr10g0095811 Lupinus albus HOM05D002505 ORTHO05D007115 1.1e-36 157.5 156 55.1
SEGI_16855 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 1.1e-36 157.5 137 60.6
Sp2g26890 Schrenkiella parvula HOM05D002505 ORTHO05D007115 1.5e-36 157.1 164 54.3
SGA_v2.0_scaffold104G30125 Striga asiatica HOM05D002505 ORTHO05D007115 1.5e-36 157.1 176 51.7
Gorai.008G257100 Gossypium raimondii HOM05D002505 ORTHO05D007115 1.9e-36 156.8 157 52.9
Duzib205G1766 Durio zibethinus HOM05D002505 ORTHO05D007115 3.3e-36 156.0 153 54.2
Gohir.A12G238900 Gossypium hirsutum HOM05D002505 ORTHO05D007115 4.3e-36 155.6 157 52.2
CARHR277730 Cardamine hirsuta HOM05D002505 ORTHO05D007115 5.6e-36 155.2 158 55.1
Ca_12566_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 5.6e-36 155.2 131 60.3
Prupe.5G127300 Prunus persica HOM05D002505 ORTHO05D007115 5.6e-36 155.2 138 58.0
CsaV3_5G036540 Cucumis sativus L. HOM05D002505 ORTHO05D007115 7.3e-36 154.8 145 55.2
Peaxi162Scf00074g00358 Petunia axillaris HOM05D002505 ORTHO05D007115 7.3e-36 154.8 128 63.3
CDE11G0043 Ceratophyllum demersum HOM05D002505 ORTHO05D007115 9.5e-36 154.5 180 50.6
AT5G63830 Arabidopsis thaliana HOM05D002505 ORTHO05D007115 1.2e-35 154.1 162 53.7
Gohir.D12G240000 Gossypium hirsutum HOM05D002505 ORTHO05D007115 1.2e-35 154.1 157 52.9
THA.LOC104823623 Tarenaya hassleriana HOM05D002505 ORTHO05D007115 2.1e-35 153.3 139 59.0
ClCG05G020760 Citrullus lanatus HOM05D002505 ORTHO05D007115 3.6e-35 152.5 145 55.2
Thhalv10004334m.g Eutrema salsugineum HOM05D002505 ORTHO05D007115 4.7e-35 152.1 164 52.4
FvH4_4g16080 Fragaria vesca HOM05D002505 ORTHO05D007115 6.2e-35 151.8 155 52.9
FAN12G2820 Fragaria x ananassa HOM05D002505 ORTHO05D007115 6.2e-35 151.8 155 52.9
FAN17G1638 Fragaria x ananassa HOM05D002505 ORTHO05D007115 6.2e-35 151.8 156 54.5
Lj2A158G82 Lonicera japonica HOM05D002505 ORTHO05D007115 6.2e-35 151.8 185 47.6
RcHm_v2.0_Chr7g0186571 Rosa chinensis HOM05D002505 ORTHO05D007115 8.0e-35 151.4 154 52.6
C03p62620 Brassica napus HOM05D002505 ORTHO05D007115 1.4e-34 150.6 163 53.4
BolC3t18519H Brassica oleracea HOM05D002505 ORTHO05D007115 1.4e-34 150.6 163 53.4
Potri.003G145100 Populus trichocarpa HOM05D002505 ORTHO05D007115 1.4e-34 150.6 150 55.3
FAN07G1120 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.8e-34 150.2 156 53.8
FAN22G1998 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.3e-34 149.8 156 53.8
BcaC01g02620 Brassica carinata HOM05D002505 ORTHO05D007115 6.8e-34 148.3 162 53.1
MD06G1114600 Malus domestica HOM05D002505 ORTHO05D007115 1.5e-33 147.1 159 52.2
Aa31LG1G18070 Aethionema arabicum HOM05D002505 ORTHO05D007115 2.0e-33 146.7 168 51.8
A06p30440 Brassica napus HOM05D002505 ORTHO05D007115 2.0e-33 146.7 164 51.8
BraA06t25993Z Brassica rapa HOM05D002505 ORTHO05D007115 2.0e-33 146.7 164 51.8
Rhsim10G0016900 Rhododendron simsii HOM05D000068 ORTHO05D004691 2.6e-33 146.4 145 51.7
Sed0001422 Sechium edule HOM05D002505 ORTHO05D007115 4.4e-33 145.6 150 52.0
DCAR_009648 Daucus carota HOM05D002505 ORTHO05D007115 1.1e-31 141.0 141 53.2
vmacro11517 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 5.4e-31 138.7 218 40.8
SMO348G0019 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 1.3e-29 134.0 145 47.6
Mapoly0049s0078 Marchantia polymorpha HOM05D002505 ORTHO05D007115 1.1e-28 131.0 161 44.1
Ciclev10020379m.g Citrus clementina HOM05D002505 ORTHO05D007115 1.5e-28 130.6 153 49.7
HPP92_022335 Vanilla planifolia HOM05D002505 ORTHO05D007115 2.5e-28 129.8 200 38.5
HPP92_022360 Vanilla planifolia HOM05D002505 ORTHO05D007115 3.6e-27 125.9 213 36.6
AL8G41060 Arabidopsis lyrata HOM05D002505 ORTHO05D007115 4.7e-27 125.6 156 49.4
Pp3c16_17440 Physcomitrium patens HOM05D002505 ORTHO05D007115 6.2e-27 125.2 170 42.4
Carub.0008s2460 Capsella rubella HOM05D002505 ORTHO05D007115 2.3e-26 123.2 163 46.6
Sc22g0004760 Simmondsia chinensis HOM05D002505 ORTHO05D007115 8.9e-26 121.3 101 59.4
EL10Ac5g12461 Beta vulgaris HOM05D002505 ORTHO05D007115 3.5e-22 109.4 103 59.2
Sabra01G0062100 Salix brachista HOM05D002505 ORTHO05D007115 2.5e-20 103.2 142 44.4
MELO3C012450.2 Cucumis melo HOM05D002505 ORTHO05D007115 5.6e-20 102.1 113 49.6
PGR031G3103 Punica granatum HOM05D002505 ORTHO05D007115 1.2e-19 100.9 109 55.0
Actinidia22196 Actinidia chinensis HOM05D002505 ORTHO05D007115 3.4e-17 92.8 158 42.4
Dinv25607 Davidia involucrata HOM05D002505 ORTHO05D007115 7.6e-17 91.7 94 54.3
CAN.G567.73 Capsicum annuum HOM05D002505 ORTHO05D007115 1.1e-15 87.8 94 53.2
MCO07G240 Micromonas commoda HOM05D002505 ORTHO05D007115 1.9e-15 87.0 213 34.3
Cre08.g379050 Chlamydomonas reinhardtii HOM05D002505 ORTHO05D007115 2.4e-15 86.7 102 47.1
PGSC0003DMG400012246 Solanum tuberosum HOM05D002505 ORTHO05D007115 6.0e-14 82.0 89 53.9
Glyma.13G121900 Glycine max HOM05D002505 ORTHO05D007115 7.8e-14 81.6 95 50.5
ECA240G2126 Erigeron canadensis HOM05D002505 ORTHO05D007115 1.2e-11 74.3 99 46.5
CSS0027773 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 1.4e-10 70.9 66 56.1
FAN08G0319 Fragaria x ananassa HOM05D002505 ORTHO05D007115 3.1e-10 69.7 93 50.5
vmacro04587 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 8.4e-08 61.6 63 54.0
PRCOL_00002153 Prasinoderma coloniale HOM05D024116 ORTHO05D023526 3.5e-06 56.2 73 42.5
MD05G1136200 Malus domestica HOM05D002505 ORTHO05D007115 4.6e-06 55.8 44 56.8


User provided reference genes

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