Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb044240 Zea mays HOM05D028875 ORTHO05D003347 2.1e-42 175.3 86 100.0
Zm00001eb268340 Zea mays HOM05D028875 ORTHO05D003347 3.3e-32 141.4 72 94.4
Zm00001eb329750 Zea mays HOM05D028875 ORTHO05D003347 3.3e-32 141.4 71 97.2
Zm00001eb051570 Zea mays HOM05D028875 ORTHO05D003347 6.3e-31 137.1 71 95.8
Zm00001eb029410 Zea mays HOM05D003086 ORTHO05D003347 8.8e-25 116.7 86 72.1
Os10g0502100 Oryza sativa ssp. japonica HOM05D003086 ORTHO05D003347 2.5e-19 98.6 90 57.8
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 5.7e-08 60.8 52 53.8
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 9.8e-08 60.1 50 60.0
Atru.chr13.862 Acer truncatum HOM05D007433 ORTHO05D009199 1.7e-07 59.3 41 63.4
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 2.2e-07 58.9 48 54.2
Atru.chr9.1962 Acer truncatum HOM05D003086 ORTHO05D003347 2.8e-07 58.5 54 51.9
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 2.8e-07 58.5 52 53.8
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 2.8e-07 58.5 53 50.9
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 2.8e-07 58.5 50 54.0
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 3.7e-07 58.2 44 63.6
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 4.9e-07 57.8 55 54.5
Actinidia29630 Actinidia chinensis HOM05D001492 ORTHO05D001400 4.9e-07 57.8 48 54.2
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 4.9e-07 57.8 44 63.6
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 4.9e-07 57.8 44 63.6
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 4.9e-07 57.8 52 59.6
QL12p038428 Quercus lobata HOM05D007433 ORTHO05D009199 4.9e-07 57.8 39 64.1
Rhsim07G0217700 Rhododendron simsii HOM05D007433 ORTHO05D009199 4.9e-07 57.8 42 66.7
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 6.3e-07 57.4 49 59.2
MELO3C016834.2 Cucumis melo HOM05D007433 ORTHO05D009199 6.3e-07 57.4 48 54.2
CsaV3_4G035230 Cucumis sativus L. HOM05D007433 ORTHO05D009199 6.3e-07 57.4 48 54.2
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 8.3e-07 57.0 49 53.1
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 1.1e-06 56.6 55 52.7
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 1.1e-06 56.6 68 44.1
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 1.1e-06 56.6 59 50.8
Sed0005155 Sechium edule HOM05D007433 ORTHO05D009199 1.1e-06 56.6 51 51.0
TAR628G1336 Trochodendron aralioides HOM05D007433 ORTHO05D009199 1.1e-06 56.6 42 64.3
Manes.05G183000 Manihot esculenta HOM05D007433 ORTHO05D009199 1.4e-06 56.2 43 62.8
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 1.4e-06 56.2 55 50.9
SalBow4G0310 Salvia bowleyana HOM05D003086 ORTHO05D003347 1.4e-06 56.2 51 54.9
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 1.8e-06 55.8 53 50.9
Ciclev10002882m.g Citrus clementina HOM05D007433 ORTHO05D009199 1.8e-06 55.8 36 72.2
Sabra14G0073900 Salix brachista HOM05D003086 ORTHO05D003347 1.8e-06 55.8 55 52.7
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 2.4e-06 55.5 47 55.3
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 2.4e-06 55.5 48 54.2
ClCG05G026590 Citrullus lanatus HOM05D007433 ORTHO05D009199 3.1e-06 55.1 51 49.0
Dinv44935 Davidia involucrata HOM05D007433 ORTHO05D009199 3.1e-06 55.1 42 59.5
Potri.014G013600 Populus trichocarpa HOM05D007433 ORTHO05D009199 3.1e-06 55.1 42 64.3
vmacro04593 Vaccinium macrocarpon HOM05D007433 ORTHO05D009199 3.1e-06 55.1 42 61.9
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 4.1e-06 54.7 64 42.2
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 4.1e-06 54.7 49 55.1
Sc23g0002030 Simmondsia chinensis HOM05D003086 ORTHO05D003347 4.1e-06 54.7 73 43.8
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 5.4e-06 54.3 47 55.3
Hma1.2p1_1170F.1_g263410 Hydrangea macrophylla HOM05D007433 ORTHO05D009199 5.4e-06 54.3 39 64.1
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 5.4e-06 54.3 61 47.5
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 5.4e-06 54.3 83 41.0
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 5.4e-06 54.3 56 50.0
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 7.0e-06 53.9 54 48.1
Dinv39208 Davidia involucrata HOM05D007433 ORTHO05D009199 7.0e-06 53.9 42 61.9
Gohir.A02G080400 Gossypium hirsutum HOM05D007433 ORTHO05D009199 7.0e-06 53.9 53 50.9
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 7.0e-06 53.9 50 54.0
Gohir.D02G088300 Gossypium hirsutum HOM05D007433 ORTHO05D009199 7.0e-06 53.9 53 50.9
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 7.0e-06 53.9 50 54.0
Gorai.005G098900 Gossypium raimondii HOM05D007433 ORTHO05D009199 7.0e-06 53.9 53 50.9
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 7.0e-06 53.9 50 54.0
Manes.18G048800 Manihot esculenta HOM05D007433 ORTHO05D009199 7.0e-06 53.9 49 55.1
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 7.0e-06 53.9 47 55.3
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 7.0e-06 53.9 47 55.3
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 9.2e-06 53.5 43 58.1
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 9.2e-06 53.5 43 58.1
Gohir.A02G150000 Gossypium hirsutum HOM05D007433 ORTHO05D009199 9.2e-06 53.5 42 54.8


User provided reference genes

Program Settings