Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 4.5e-232 807.7 464 100.0
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 2.1e-205 719.2 457 91.0
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 3.9e-167 592.0 461 77.0
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 2.8e-165 585.9 462 75.8
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 3.6e-133 479.2 409 72.4
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 4.8e-133 478.8 404 71.5
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 1.1e-132 477.6 412 72.3
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 5.3e-132 475.3 427 68.1
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 2.6e-131 473.0 418 69.9
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 2.2e-130 469.9 411 71.5
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 3.8e-130 469.2 403 70.5
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 3.8e-130 469.2 416 69.7
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 6.4e-130 468.4 415 69.6
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.1e-129 467.6 411 64.0
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 2.4e-129 466.5 416 68.8
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 2.4e-129 466.5 418 68.7
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 1.2e-128 464.2 416 70.0
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 2.1e-128 463.4 416 69.2
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 4.6e-128 462.2 406 70.2
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 4.6e-128 462.2 401 70.6
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 7.9e-128 461.5 401 71.3
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 1.3e-127 460.7 416 69.5
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 3.9e-127 459.1 416 69.0
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 2.5e-126 456.4 415 67.5
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 5.6e-126 455.3 415 67.7
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 5.6e-126 455.3 415 69.4
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.1e-124 451.1 446 64.1
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 5.3e-124 448.7 412 68.7
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 2.0e-123 446.8 466 56.9
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 2.6e-123 446.4 352 75.6
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 2.6e-123 446.4 418 67.7
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 3.4e-123 446.0 462 59.1
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 7.6e-123 444.9 375 70.9
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 1.7e-122 443.7 417 66.9
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 2.9e-122 443.0 412 68.0
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 4.2e-121 439.1 415 67.5
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 5.5e-121 438.7 416 64.4
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 2.1e-120 436.8 413 66.1
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 1.3e-119 434.1 416 65.4
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 1.5e-118 430.6 417 66.9
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 2.5e-118 429.9 414 66.9
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 7.4e-118 428.3 372 69.9
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 7.4e-118 428.3 421 65.3
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 3.7e-117 426.0 401 67.3
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 8.2e-117 424.9 419 65.2
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 1.1e-116 424.5 407 66.6
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 1.4e-116 424.1 422 64.5
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 1.8e-116 423.7 417 66.4
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 4.1e-116 422.5 428 63.3
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 6.9e-116 421.8 402 66.9
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 9.0e-116 421.4 402 66.9
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 2.0e-115 420.2 406 65.5
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 2.6e-115 419.9 424 63.4
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 4.5e-115 419.1 402 66.7
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 2.9e-114 416.4 415 65.1
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 2.9e-114 416.4 424 63.2
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 3.8e-114 416.0 416 64.2
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 1.9e-113 413.7 424 62.0
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 5.5e-113 412.1 417 63.5
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 7.2e-113 411.8 415 63.6
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 7.2e-113 411.8 415 63.9
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 9.3e-113 411.4 428 62.4
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 2.1e-112 410.2 415 63.4
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 4.6e-112 409.1 321 70.1
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 6.1e-112 408.7 412 64.1
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 7.9e-112 408.3 415 63.4
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.0e-111 407.9 414 63.5
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 1.0e-111 407.9 427 62.3
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 3.0e-111 406.4 424 62.3
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 3.3e-110 402.9 416 63.0
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 3.3e-110 402.9 415 62.7
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 5.7e-110 402.1 420 62.6
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 4.8e-109 399.1 413 62.5
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 6.3e-109 398.7 420 62.1
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 1.4e-108 397.5 406 63.8
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 2.4e-108 396.7 427 54.8
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 2.4e-108 396.7 402 64.4
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 3.1e-108 396.4 416 62.3
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 6.9e-108 395.2 416 62.0
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 1.7e-106 390.6 363 66.9
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 5.0e-106 389.0 424 59.9
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 6.5e-106 388.7 405 63.0
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 1.4e-105 387.5 428 60.5
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 4.2e-105 386.0 419 59.7
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.1e-104 383.6 429 59.4
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.6e-104 382.5 375 65.1
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 7.9e-104 381.7 429 59.4
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 1.0e-103 381.3 433 58.0
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 3.9e-103 379.4 420 59.0
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 4.3e-102 375.9 350 68.0
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 9.7e-102 374.8 419 58.7
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 9.7e-102 374.8 419 58.7
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 9.7e-102 374.8 419 58.7
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 9.7e-102 374.8 420 58.8
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.7e-101 374.0 414 60.6
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 2.8e-101 373.2 419 58.5
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 2.8e-101 373.2 419 58.5
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 1.1e-100 371.3 420 58.8
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 1.4e-100 370.9 419 58.5
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.4e-100 370.9 414 60.1
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 2.4e-100 370.2 414 59.4
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 2.4e-100 370.2 406 55.4
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 5.3e-100 369.0 399 60.9
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 9.1e-100 368.2 407 60.2
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 2.0e-99 367.1 420 57.6
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 1.7e-98 364.0 349 67.6
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 2.2e-98 363.6 431 57.5
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 2.9e-98 363.2 461 55.7
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 2.3e-95 353.6 397 59.4
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 3.9e-95 352.8 400 59.0
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 3.9e-95 352.8 405 55.8
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 2.0e-94 350.5 361 60.7
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 3.3e-94 349.7 347 59.4
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 2.2e-93 347.1 414 59.4
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 9.1e-92 341.7 415 57.1
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 1.9e-89 334.0 411 57.2
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 4.0e-87 326.2 411 58.2
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 4.0e-87 326.2 415 53.0
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 9.7e-86 321.6 436 53.7
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 1.7e-85 320.9 338 62.1
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 3.5e-83 313.2 459 46.4
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 1.0e-82 311.6 322 66.5
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 5.2e-79 299.3 241 63.1
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 2.0e-78 297.4 349 53.6
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 2.4e-76 290.4 297 54.2
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 1.7e-69 267.7 285 64.9
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 3.4e-62 243.4 562 35.8
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 4.4e-62 243.0 470 39.8
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 5.0e-58 229.6 433 41.1
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 1.1e-57 228.4 236 55.9
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 1.9e-52 211.1 361 38.0
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 2.5e-49 200.7 136 72.8
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 4.3e-33 146.7 95 77.9
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 5.2e-31 139.8 317 32.2
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 1.5e-30 138.3 143 52.4
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 4.3e-25 120.2 123 54.5
Lsat_1_v5_gn_1_84960 Lactuca sativa HOM05D004623 ORTHO05D005100 1.2e-22 112.1 68 77.9
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.8e-21 107.1 102 52.9
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.9e-21 106.7 112 50.9
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 8.4e-21 105.9 112 51.8
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.1e-20 105.5 102 52.9
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 2.4e-20 104.4 112 50.0
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 7.1e-20 102.8 312 26.0
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.5e-19 100.5 97 53.6
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 2.5e-17 94.4 122 46.7
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 4.8e-16 90.1 55 76.4
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 8.1e-16 89.4 139 38.8
TPR.G39353 Trifolium pratense HOM05D004623 ORTHO05D005100 2.4e-15 87.8 57 75.4
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.0e-15 87.0 139 41.0
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 2.5e-09 67.8 123 38.2
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 9.6e-09 65.9 71 57.7
Nn3g16272 Nelumbo nucifera HOM05D004623 ORTHO05D005100 3.7e-08 63.9 95 38.9
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 8.2e-08 62.8 130 36.9
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 1.1e-07 62.4 52 65.4
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 5.3e-07 60.1 47 59.6
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 1.5e-06 58.5 78 46.2


User provided reference genes

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