Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb043360 Zea mays HOM05D037664 ORTHO05D037072 1.3e-232 809.3 394 100.0
Os10g0520100 Oryza sativa ssp. japonica HOM05D037664 ORTHO05D037072 2.4e-125 453.0 412 60.2
Os10g0519800 Oryza sativa ssp. japonica HOM05D037664 ORTHO05D037072 5.7e-95 352.1 426 49.1
Os10g0520400 Oryza sativa ssp. japonica HOM05D042905 ORTHO05D000074 1.4e-24 118.2 396 28.3
DCAR_023003 Daucus carota HOM05D000151 ORTHO05D000074 2.5e-18 97.4 426 26.8
CANSAT25G2327 Cannabis sativa HOM05D000151 ORTHO05D000074 9.0e-16 89.0 362 25.4
Nn6g31858 Nelumbo nucifera HOM05D000151 ORTHO05D000074 7.6e-15 85.9 378 27.2
Eucgr.F03527 Eucalyptus grandis HOM05D000151 ORTHO05D000074 1.3e-14 85.1 374 28.9
Actinidia15471 Actinidia chinensis HOM05D000151 ORTHO05D000074 6.5e-14 82.8 378 27.0
CiPaw.08G070000 Carya illinoinensis HOM05D000151 ORTHO05D000074 1.1e-13 82.0 375 27.2
MD08G1006100 Malus domestica HOM05D000151 ORTHO05D000074 4.2e-13 80.1 361 26.9
MD15G1005500 Malus domestica HOM05D000151 ORTHO05D000074 4.2e-13 80.1 364 25.8
TAR629G2629 Trochodendron aralioides HOM05D000151 ORTHO05D000074 4.2e-13 80.1 355 25.6
FAN20G1383 Fragaria x ananassa HOM05D000151 ORTHO05D000074 7.1e-13 79.3 359 26.2
CiPaw.08G069900 Carya illinoinensis HOM05D000151 ORTHO05D000074 2.1e-12 77.8 380 26.1
Oeu017909.1 Olea europaea HOM05D000151 ORTHO05D000074 3.5e-12 77.0 425 25.4
Prupe.1G358000 Prunus persica HOM05D000151 ORTHO05D000074 3.5e-12 77.0 365 25.5
PSO170G4594 Papaver somniferum HOM05D000151 ORTHO05D000074 4.6e-12 76.6 361 27.4
TAR629G0126 Trochodendron aralioides HOM05D000151 ORTHO05D000074 4.6e-12 76.6 357 25.2
MELO3C017000.2 Cucumis melo HOM05D000151 ORTHO05D000074 6.0e-12 76.3 362 27.6
PGR031G1696 Punica granatum HOM05D000151 ORTHO05D000074 1.0e-11 75.5 371 25.1
Gorai.010G001100 Gossypium raimondii HOM05D000151 ORTHO05D000074 1.3e-11 75.1 376 25.5
Thecc.08G054100 Theobroma cacao HOM05D000151 ORTHO05D000074 3.9e-11 73.6 362 25.4
Ciclev10001350m.g Citrus clementina HOM05D000151 ORTHO05D000074 6.7e-11 72.8 364 22.8
SGA_v2.0_scaffold351G49652 Striga asiatica HOM05D000151 ORTHO05D000074 1.5e-10 71.6 378 28.0
RcHm_v2.0_Chr6g0303821 Rosa chinensis HOM05D000151 ORTHO05D000074 2.5e-10 70.9 359 25.6
MSTRG.1137 Avicennia marina HOM05D000151 ORTHO05D000074 4.3e-10 70.1 373 26.8
Prupe.6G184200 Prunus persica HOM05D000151 ORTHO05D000074 4.3e-10 70.1 207 29.0
CsaV3_4G037010 Cucumis sativus L. HOM05D000151 ORTHO05D000074 5.7e-10 69.7 362 26.5
Manes.18G008400 Manihot esculenta HOM05D000151 ORTHO05D000074 5.7e-10 69.7 363 26.2
QL02p013380 Quercus lobata HOM05D000151 ORTHO05D000074 5.7e-10 69.7 369 26.6
MD10G1231500 Malus domestica HOM05D000151 ORTHO05D000074 7.4e-10 69.3 225 29.3
Prupe.6G184600 Prunus persica HOM05D000151 ORTHO05D000074 1.3e-09 68.6 207 29.0
TWI56G0068 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 1.3e-09 68.6 377 24.1
Eucgr.B03923 Eucalyptus grandis HOM05D000151 ORTHO05D000074 1.6e-09 68.2 394 25.9
MBI06_g17230_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 2.2e-09 67.8 370 25.7
PGR031G1698 Punica granatum HOM05D000151 ORTHO05D000074 2.2e-09 67.8 365 27.9
ClCG05G015310 Citrullus lanatus HOM05D000151 ORTHO05D000074 2.8e-09 67.4 364 26.1
MBI15_g35731_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 2.8e-09 67.4 376 25.5
RcHm_v2.0_Chr5g0020191 Rosa chinensis HOM05D000151 ORTHO05D000074 6.3e-09 66.2 361 24.7
MD13G1075200 Malus domestica HOM05D000151 ORTHO05D000074 1.4e-08 65.1 407 23.1
PGR031G0161 Punica granatum HOM05D000151 ORTHO05D000074 5.3e-08 63.2 221 24.9
Aqoxy2G00256 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 6.9e-08 62.8 353 23.8
CiPaw.06G077200 Carya illinoinensis HOM05D000151 ORTHO05D000074 1.5e-07 61.6 433 23.8
CiPaw.06G046500 Carya illinoinensis HOM05D000151 ORTHO05D000074 2.6e-07 60.8 377 25.2
TAR636G2770 Trochodendron aralioides HOM05D000151 ORTHO05D000074 3.4e-07 60.5 363 24.5
TAR626G0415 Trochodendron aralioides HOM05D000151 ORTHO05D000074 4.5e-07 60.1 338 26.3
COL.COLO4_34274 Corchorus olitorius HOM05D000151 ORTHO05D000074 5.9e-07 59.7 371 23.2
MBI15_g47572_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 5.9e-07 59.7 251 26.3
Hma1.2p1_0916F.1_g236540 Hydrangea macrophylla HOM05D000151 ORTHO05D000074 7.7e-07 59.3 92 34.8
Hma1.2p1_0916F.1_g236545 Hydrangea macrophylla HOM05D000151 ORTHO05D000074 1.3e-06 58.5 92 34.8
Aqoxy4G02957 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 1.7e-06 58.2 363 26.4
Sabra02G0011500 Salix brachista HOM05D000151 ORTHO05D000074 1.7e-06 58.2 360 24.4
TWI56G0047 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 1.7e-06 58.2 238 23.5
Zm00001eb272730 Zea mays HOM05D000151 ORTHO05D000074 2.2e-06 57.8 134 37.3
Os03g0708200 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 2.9e-06 57.4 133 36.8
TAR525G0003 Trochodendron aralioides HOM05D000151 ORTHO05D000074 2.9e-06 57.4 338 25.4
COL.COLO4_26063 Corchorus olitorius HOM05D000151 ORTHO05D000074 3.8e-06 57.0 302 24.8
Cfa008697 Carpinus fangiana HOM05D000151 ORTHO05D000074 5.0e-06 56.6 351 22.5
Potri.002G014500 Populus trichocarpa HOM05D000151 ORTHO05D000074 5.0e-06 56.6 360 24.4
SGA_v2.0_scaffold138G35171 Striga asiatica HOM05D007685 ORTHO05D009136 8.5e-06 55.8 255 26.7


User provided reference genes

Program Settings