Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 3.4e-109 398.7 255 100.0
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 4.0e-41 172.6 94 89.4
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 1.6e-37 160.6 83 94.0
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 1.3e-34 151.0 75 100.0
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 1.3e-34 151.0 75 100.0
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 2.2e-31 140.2 75 92.0
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 1.6e-26 124.0 75 77.3
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 5.8e-24 115.5 75 72.0
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 2.5e-19 100.1 79 62.0
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 3.3e-19 99.8 98 51.0
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 4.3e-19 99.4 93 55.9
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 5.6e-19 99.0 93 55.9
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 2.4e-17 93.6 74 58.1
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 5.3e-17 92.4 76 59.2
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 9.0e-17 91.7 85 56.5
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 9.0e-17 91.7 71 59.2
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 9.0e-17 91.7 75 58.7
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 1.2e-16 91.3 69 60.9
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.2e-16 91.3 69 60.9
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.2e-16 91.3 69 60.9
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 1.5e-16 90.9 94 48.9
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.0e-16 90.5 71 59.2
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 4.5e-16 89.4 75 56.0
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 4.5e-16 89.4 71 59.2
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 5.8e-16 89.0 96 50.0
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 7.6e-16 88.6 76 53.9
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 1.0e-15 88.2 69 58.0
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 1.3e-15 87.8 85 51.8
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 1.3e-15 87.8 69 59.4
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 1.7e-15 87.4 91 50.5
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.7e-15 87.4 68 60.3
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 1.7e-15 87.4 73 54.8
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 1.7e-15 87.4 76 61.8
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.7e-15 87.4 75 56.0
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 2.2e-15 87.0 75 53.3
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 3.8e-15 86.3 75 52.0
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 3.8e-15 86.3 69 56.5
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 3.8e-15 86.3 74 54.1
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 3.8e-15 86.3 69 58.0
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 3.8e-15 86.3 69 58.0
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 4.9e-15 85.9 79 50.6
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 6.5e-15 85.5 74 54.1
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 6.5e-15 85.5 74 54.1
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 1.1e-14 84.7 75 54.7
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 1.1e-14 84.7 72 51.4
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 1.1e-14 84.7 75 52.0
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 1.1e-14 84.7 75 50.7
Zm00001eb408990 Zea mays HOM05D004300 ORTHO05D005171 1.1e-14 84.7 42 100.0
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 1.4e-14 84.3 69 56.5
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 1.9e-14 84.0 75 53.3
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 2.5e-14 83.6 75 52.0
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 3.2e-14 83.2 85 50.6
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 3.2e-14 83.2 85 49.4
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 4.2e-14 82.8 72 58.3
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 4.2e-14 82.8 69 49.3
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 5.5e-14 82.4 85 50.6
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 7.1e-14 82.0 85 48.2
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 7.1e-14 82.0 74 51.4
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 9.3e-14 81.6 74 52.7
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 9.3e-14 81.6 74 52.7
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 9.3e-14 81.6 77 49.4
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 1.2e-13 81.3 78 48.7
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 1.2e-13 81.3 78 48.7
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 1.2e-13 81.3 78 48.7
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 1.2e-13 81.3 85 49.4
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 1.2e-13 81.3 74 51.4
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 1.2e-13 81.3 76 48.7
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 1.6e-13 80.9 72 56.9
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 2.7e-13 80.1 78 47.4
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 2.7e-13 80.1 78 47.4
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 2.7e-13 80.1 78 47.4
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 2.7e-13 80.1 74 52.7
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 2.7e-13 80.1 74 55.4
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 3.5e-13 79.7 74 52.7
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 3.5e-13 79.7 96 44.8
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 3.5e-13 79.7 74 50.0
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 4.6e-13 79.3 74 52.7
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 4.6e-13 79.3 73 54.8
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 4.6e-13 79.3 96 43.8
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 6.0e-13 79.0 78 47.4
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 6.0e-13 79.0 73 50.7
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 6.0e-13 79.0 78 47.4
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 6.0e-13 79.0 74 50.0
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 6.0e-13 79.0 84 45.2
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 7.9e-13 78.6 66 54.5
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 1.0e-12 78.2 84 45.2
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 1.0e-12 78.2 84 45.2
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 1.0e-12 78.2 68 51.5
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 1.0e-12 78.2 84 46.4
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 1.3e-12 77.8 96 42.7
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 1.3e-12 77.8 72 45.8
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 1.3e-12 77.8 78 47.4
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 1.3e-12 77.8 78 47.4
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 1.3e-12 77.8 69 52.2
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.8e-12 77.4 78 47.4
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 2.3e-12 77.0 85 47.1
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 3.0e-12 76.6 92 46.7
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 3.0e-12 76.6 84 46.4
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 3.0e-12 76.6 92 46.7
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 3.0e-12 76.6 72 52.8
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 3.9e-12 76.3 66 54.5
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 3.9e-12 76.3 72 44.4
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 3.9e-12 76.3 96 43.8
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 5.1e-12 75.9 66 53.0
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 5.1e-12 75.9 68 50.0
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 6.7e-12 75.5 98 38.8
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 6.7e-12 75.5 92 40.2
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 1.5e-11 74.3 70 47.1
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 1.5e-11 74.3 70 47.1
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 1.9e-11 73.9 66 47.0
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 1.9e-11 73.9 70 47.1
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 1.9e-11 73.9 70 47.1
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 2.5e-11 73.6 77 48.1
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 3.3e-11 73.2 98 37.8
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 4.3e-11 72.8 71 50.7
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 4.3e-11 72.8 76 50.0
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 5.7e-11 72.4 68 50.0
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 7.4e-11 72.0 69 52.2
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 7.4e-11 72.0 74 48.6
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 9.6e-11 71.6 99 34.3
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 9.6e-11 71.6 68 50.0
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 1.3e-10 71.2 99 35.4
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 1.6e-10 70.9 66 45.5
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 2.8e-10 70.1 98 40.8
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 2.8e-10 70.1 98 40.8
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 2.8e-10 70.1 98 40.8
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 6.3e-10 68.9 68 50.0
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 6.3e-10 68.9 83 43.4
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 8.2e-10 68.6 78 43.6
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 1.1e-09 68.2 70 45.7
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 1.1e-09 68.2 92 38.0
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 2.4e-09 67.0 70 47.1
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 3.1e-09 66.6 98 40.8
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 5.3e-09 65.9 83 42.2
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.2e-08 64.7 50 54.0
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.5e-08 64.3 48 56.2
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.5e-08 64.3 48 56.2
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 1.5e-08 64.3 45 62.2
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 1.5e-08 64.3 56 51.8
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 2.0e-08 63.9 76 43.4
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 5.8e-08 62.4 60 50.0
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.7e-07 60.8 60 48.3
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 6.5e-07 58.9 68 48.5
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 9.3e-06 55.1 51 45.1


User provided reference genes

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