Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb042600 Zea mays HOM05D006056 ORTHO05D007136 8.2e-82 307.0 153 100.0
Os08g0378900 Oryza sativa ssp. japonica HOM05D006056 ORTHO05D007136 1.3e-42 176.8 152 65.8
Haze_03023 Corylus avellana HOM05D006056 ORTHO05D007136 4.6e-32 141.7 136 53.7
Haze_03016 Corylus avellana HOM05D006056 ORTHO05D007136 5.9e-32 141.4 129 55.0
EL10Ac2g02787 Beta vulgaris HOM05D006056 ORTHO05D007136 1.0e-31 140.6 80 77.5
Phvul.005G025600 Phaseolus vulgaris HOM05D006056 ORTHO05D007136 1.0e-31 140.6 80 77.5
Sopen01g040210 Solanum pennellii HOM05D006056 ORTHO05D007136 1.0e-31 140.6 103 63.1
arahy.Tifrunner.gnm1.ann1.6DS776 Arachis hypogaea HOM05D006056 ORTHO05D007136 1.3e-31 140.2 133 55.6
CAN.G1045.19 Capsicum annuum HOM05D006056 ORTHO05D007136 1.3e-31 140.2 97 68.0
CiPaw.13G014800 Carya illinoinensis HOM05D006056 ORTHO05D007136 1.3e-31 140.2 140 54.3
Nitab4.5_0003481g0070 Nicotiana tabacum HOM05D006056 ORTHO05D007136 1.7e-31 139.8 111 62.2
Eucgr.G03224 Eucalyptus grandis HOM05D006056 ORTHO05D007136 2.3e-31 139.4 155 49.7
Peaxi162Scf00082g00120 Petunia axillaris HOM05D006056 ORTHO05D007136 2.3e-31 139.4 108 59.3
arahy.Tifrunner.gnm1.ann1.X1BBAM Arachis hypogaea HOM05D006056 ORTHO05D007136 3.0e-31 139.0 80 76.2
Lsat_1_v5_gn_9_40260 Lactuca sativa HOM05D006056 ORTHO05D007136 3.0e-31 139.0 122 55.7
Nitab4.5_0005808g0070 Nicotiana tabacum HOM05D006056 ORTHO05D007136 3.0e-31 139.0 130 54.6
PGR044G1154 Punica granatum HOM05D006056 ORTHO05D007136 3.0e-31 139.0 80 76.2
Sed0016890 Sechium edule HOM05D006056 ORTHO05D007136 3.9e-31 138.7 106 61.3
Solyc01g096480.2 Solanum lycopersicum HOM05D006056 ORTHO05D007136 3.9e-31 138.7 80 75.0
Actinidia10152 Actinidia chinensis HOM05D006056 ORTHO05D007136 5.0e-31 138.3 80 77.5
BNapus_Darmor_BZH_scaffold_117p00040 Brassica napus HOM05D006056 ORTHO05D007136 5.0e-31 138.3 132 54.5
Cc08_g11260 Coffea canephora HOM05D006056 ORTHO05D007136 5.0e-31 138.3 101 61.4
Migut.B01239 Erythranthe guttata HOM05D006056 ORTHO05D007136 5.0e-31 138.3 80 76.2
Manes.04G158100 Manihot esculenta HOM05D006056 ORTHO05D007136 5.0e-31 138.3 80 76.2
Potri.001G028500 Populus trichocarpa HOM05D006056 ORTHO05D007136 5.0e-31 138.3 125 55.2
BraA01t04419Z Brassica rapa HOM05D006056 ORTHO05D007136 6.6e-31 137.9 132 55.3
Cpa.g.sc2293.2 Carica papaya HOM05D006056 ORTHO05D007136 6.6e-31 137.9 80 75.0
Nn2g14790 Nelumbo nucifera HOM05D006056 ORTHO05D007136 6.6e-31 137.9 80 76.2
PSO339G3509 Papaver somniferum HOM05D006056 ORTHO05D007136 6.6e-31 137.9 125 55.2
CDE05G0697 Ceratophyllum demersum HOM05D006056 ORTHO05D007136 8.6e-31 137.5 80 80.0
ECA248G1356 Erigeron canadensis HOM05D006056 ORTHO05D007136 8.6e-31 137.5 101 61.4
PSO384G1577 Papaver somniferum HOM05D006056 ORTHO05D007136 8.6e-31 137.5 125 55.2
Medtr3g014240 Medicago truncatula HOM05D006056 ORTHO05D007136 1.1e-30 137.1 80 75.0
vmacro13759 Vaccinium macrocarpon HOM05D006056 ORTHO05D007136 1.1e-30 137.1 80 77.5
HPP92_023265 Vanilla planifolia HOM05D002937 ORTHO05D003063 1.1e-30 137.1 76 80.3
HPP92_023300 Vanilla planifolia HOM05D002937 ORTHO05D003063 1.1e-30 137.1 76 80.3
AT3G06730 Arabidopsis thaliana HOM05D006056 ORTHO05D007136 1.5e-30 136.7 150 49.3
BcaC05g30553 Brassica carinata HOM05D006056 ORTHO05D007136 1.5e-30 136.7 80 75.0
Duzib106G0937 Durio zibethinus HOM05D006056 ORTHO05D007136 1.5e-30 136.7 80 76.2
Duzib106G1426 Durio zibethinus HOM05D006056 ORTHO05D007136 1.5e-30 136.7 80 76.2
Thhalv10021607m.g Eutrema salsugineum HOM05D006056 ORTHO05D007136 1.5e-30 136.7 80 75.0
PGSC0003DMG400005407 Solanum tuberosum HOM05D006056 ORTHO05D007136 1.5e-30 136.7 77 76.6
BcaC09g47915 Brassica carinata HOM05D006056 ORTHO05D007136 1.9e-30 136.3 80 75.0
Ca_12968_v3 Cicer arietinum L. HOM05D006056 ORTHO05D007136 1.9e-30 136.3 80 72.5
Nn7g36738 Nelumbo nucifera HOM05D006056 ORTHO05D007136 1.9e-30 136.3 80 73.8
Dinv44692 Davidia involucrata HOM05D006056 ORTHO05D007136 2.5e-30 136.0 80 76.2
THA.LOC104826732 Tarenaya hassleriana HOM05D006056 ORTHO05D007136 2.5e-30 136.0 80 73.8
Atru.chr12.1257 Acer truncatum HOM05D006056 ORTHO05D007136 3.3e-30 135.6 80 73.8
AL3G17840 Arabidopsis lyrata HOM05D006056 ORTHO05D007136 3.3e-30 135.6 150 48.7
Glyma.04G135300 Glycine max HOM05D006056 ORTHO05D007136 3.3e-30 135.6 80 73.8
Psat5g221760 Pisum sativum HOM05D006056 ORTHO05D007136 3.3e-30 135.6 80 73.8
SGA_v2.0_scaffold124G33607 Striga asiatica HOM05D006056 ORTHO05D007136 3.3e-30 135.6 80 73.8
Thecc.10G150600 Theobroma cacao HOM05D006056 ORTHO05D007136 3.3e-30 135.6 80 75.0
TPR.G1448 Trifolium pratense HOM05D006056 ORTHO05D007136 3.3e-30 135.6 80 75.0
C05p60560 Brassica napus HOM05D006056 ORTHO05D007136 4.3e-30 135.2 150 48.0
BolC5t34710H Brassica oleracea HOM05D006056 ORTHO05D007136 4.3e-30 135.2 150 48.0
BraA05t22856Z Brassica rapa HOM05D006056 ORTHO05D007136 4.3e-30 135.2 150 48.0
ClCG08G010680 Citrullus lanatus HOM05D006056 ORTHO05D007136 4.3e-30 135.2 80 73.8
CsaV3_6G035850 Cucumis sativus L. HOM05D006056 ORTHO05D007136 4.3e-30 135.2 80 73.8
Sp3g05700 Schrenkiella parvula HOM05D006056 ORTHO05D007136 4.3e-30 135.2 80 75.0
Sc10g0004470 Simmondsia chinensis HOM05D006056 ORTHO05D007136 4.3e-30 135.2 80 75.0
GSVIVG01036664001 Vitis vinifera HOM05D006056 ORTHO05D007136 4.3e-30 135.2 80 76.2
MSTRG.16982 Avicennia marina HOM05D006056 ORTHO05D007136 5.6e-30 134.8 80 73.8
BolC1t05590H Brassica oleracea HOM05D006056 ORTHO05D007136 5.6e-30 134.8 80 73.8
Lalb_Chr04g0264131 Lupinus albus HOM05D006056 ORTHO05D007136 5.6e-30 134.8 80 71.2
TWI38G2317 Tripterygium wilfordii HOM05D006056 ORTHO05D007136 5.6e-30 134.8 80 72.5
Actinidia06230 Actinidia chinensis HOM05D006056 ORTHO05D007136 7.3e-30 134.4 78 76.9
A05p41340 Brassica napus HOM05D006056 ORTHO05D007136 7.3e-30 134.4 150 47.3
CSS0027846 Camellia sinensis var. sinensis HOM05D006056 ORTHO05D007136 7.3e-30 134.4 80 73.8
CiPaw.14G008500 Carya illinoinensis HOM05D006056 ORTHO05D007136 9.5e-30 134.0 133 54.1
Ciclev10002629m.g Citrus clementina HOM05D006056 ORTHO05D007136 9.5e-30 134.0 80 72.5
HanXRQChr11g0341201 Helianthus annuus HOM05D006056 ORTHO05D007136 9.5e-30 134.0 102 58.8
Carub.0003s0627 Capsella rubella HOM05D006056 ORTHO05D007136 1.2e-29 133.7 138 52.2
AUR62026890 Chenopodium quinoa HOM05D006056 ORTHO05D007136 1.2e-29 133.7 80 73.8
Lalb_Chr01g0014891 Lupinus albus HOM05D006056 ORTHO05D007136 1.2e-29 133.7 80 72.5
MD02G1283300 Malus domestica HOM05D006056 ORTHO05D007136 1.2e-29 133.7 133 55.6
Duzib106G1601 Durio zibethinus HOM05D006056 ORTHO05D007136 1.6e-29 133.3 80 73.8
Hund13373 Selenicereus undatus HOM05D006056 ORTHO05D007136 1.6e-29 133.3 80 71.2
Prupe.2G039200 Prunus persica HOM05D006056 ORTHO05D007136 2.1e-29 132.9 80 72.5
unitig_736.g22224 Utricularia gibba HOM05D006056 ORTHO05D007136 2.1e-29 132.9 80 75.0
Aa31LG5G17320 Aethionema arabicum HOM05D006056 ORTHO05D007136 2.8e-29 132.5 80 72.5
Glyma.11G156500 Glycine max HOM05D006056 ORTHO05D007136 2.8e-29 132.5 80 71.2
MELO3C011393.2 Cucumis melo HOM05D006056 ORTHO05D007136 3.6e-29 132.1 80 72.5
MD07G1048800 Malus domestica HOM05D006056 ORTHO05D007136 3.6e-29 132.1 133 53.4
CANSAT56G1604 Cannabis sativa HOM05D006056 ORTHO05D007136 6.2e-29 131.3 139 51.8
Duzib114G0422 Durio zibethinus HOM05D006056 ORTHO05D007136 6.2e-29 131.3 80 72.5
MBI13_g23031_MAGBIO Magnolia biondii HOM05D006056 ORTHO05D007136 6.2e-29 131.3 78 73.1
QL04p017566 Quercus lobata HOM05D006056 ORTHO05D007136 6.2e-29 131.3 80 71.2
Gohir.D10G193500 Gossypium hirsutum HOM05D006056 ORTHO05D007136 8.0e-29 131.0 80 68.8
Gorai.011G216600 Gossypium raimondii HOM05D006056 ORTHO05D007136 8.0e-29 131.0 80 68.8
Lj3g0018945 Lotus japonicus HOM05D006056 ORTHO05D007136 8.0e-29 131.0 80 71.2
RcHm_v2.0_Chr1g0325731 Rosa chinensis HOM05D006056 ORTHO05D007136 1.0e-28 130.6 80 71.2
Hma1.2p1_0837F.1_g226030 Hydrangea macrophylla HOM05D006056 ORTHO05D007136 1.4e-28 130.2 80 73.8
Hma1.2p1_0837F.1_g226040 Hydrangea macrophylla HOM05D006056 ORTHO05D007136 1.4e-28 130.2 80 73.8
Rhsim07G0067800 Rhododendron simsii HOM05D006056 ORTHO05D007136 2.3e-28 129.4 80 73.8
FAN10G2490 Fragaria x ananassa HOM05D006056 ORTHO05D007136 3.1e-28 129.0 80 70.0
ATR0782G243 Amborella trichopoda HOM05D006056 ORTHO05D007136 4.0e-28 128.6 94 64.9
FAN03G2563 Fragaria x ananassa HOM05D006056 ORTHO05D007136 8.9e-28 127.5 80 67.5
FvH4_7g03410 Fragaria vesca HOM05D006056 ORTHO05D007136 2.6e-27 125.9 80 68.8
FAN06G0497 Fragaria x ananassa HOM05D006056 ORTHO05D007136 2.6e-27 125.9 80 68.8
FAN01G1581 Fragaria x ananassa HOM05D006056 ORTHO05D007136 3.4e-27 125.6 80 70.0
DCAR_031839 Daucus carota HOM05D006056 ORTHO05D007136 7.5e-27 124.4 102 59.8
CARHR081330 Cardamine hirsuta HOM05D006056 ORTHO05D007136 2.9e-26 122.5 67 80.6
Medtr1g037680 Medicago truncatula HOM05D006056 ORTHO05D007136 4.9e-26 121.7 67 79.1
Actinidia12748 Actinidia chinensis HOM05D006056 ORTHO05D007136 8.3e-26 120.9 95 62.1
Lj9A658G61 Lonicera japonica HOM05D006056 ORTHO05D007136 2.4e-25 119.4 67 79.1
Aqoxy1G00370 Aquilegia oxysepala HOM05D006056 ORTHO05D007136 2.3e-23 112.8 61 80.3
Gohir.A10G186600 Gossypium hirsutum HOM05D006056 ORTHO05D007136 2.5e-22 109.4 80 62.5
Sabra01G0020900 Salix brachista HOM05D006056 ORTHO05D007136 3.6e-21 105.5 187 35.3
Pp3c1_18440 Physcomitrium patens HOM05D006056 ORTHO05D007136 4.7e-21 105.1 71 60.6
VMungo1080G1125 Vigna mungo HOM05D006056 ORTHO05D007136 1.3e-18 97.1 54 75.9
Cc00_g27250 Coffea canephora HOM05D006056 ORTHO05D007136 6.4e-18 94.7 76 52.6
Mapoly0006s0285 Marchantia polymorpha HOM05D006056 ORTHO05D007136 7.1e-17 91.3 96 45.8
CBR_g51450 Chara braunii HOM05D006056 ORTHO05D007136 1.2e-16 90.5 91 45.1
AagrBONN_evm.TU.Sc2ySwM_117.3107 Anthoceros agrestis HOM05D006056 ORTHO05D007136 2.1e-16 89.7 69 53.6
SMO146G0323 Selaginella moellendorffii HOM05D006056 ORTHO05D007136 3.0e-15 85.9 70 54.3
MD05G1114000 Malus domestica HOM05D006056 ORTHO05D007136 5.1e-15 85.1 54 68.5
SalBow6G0599 Salvia bowleyana HOM05D006056 ORTHO05D007136 1.2e-13 80.5 92 47.8
SEGI_00494 Sequoiadendron giganteum HOM05D006056 ORTHO05D007136 1.5e-11 73.6 58 51.7
MCO07G215 Micromonas commoda HOM05D006056 ORTHO05D007136 7.6e-11 71.2 68 44.1
Cre02.g142800 Chlamydomonas reinhardtii HOM05D006056 ORTHO05D007136 1.0e-07 60.8 89 37.1
Haze_11775 Corylus avellana HOM05D000803 ORTHO05D009288 3.0e-07 59.3 129 30.2
QL03p046068 Quercus lobata HOM05D000803 ORTHO05D009288 8.6e-07 57.8 118 31.4
QL03p046129 Quercus lobata HOM05D000803 ORTHO05D009288 8.6e-07 57.8 118 31.4
TAR381G0004 Trochodendron aralioides HOM05D000803 ORTHO05D007008 1.5e-06 57.0 105 34.3
Haze_26562 Corylus avellana HOM05D000247 ORTHO05D000288 2.5e-06 56.2 69 40.6
THA.LOC104809204 Tarenaya hassleriana HOM05D000803 ORTHO05D007008 2.5e-06 56.2 83 33.7
MCO15G471 Micromonas commoda HOM05D000247 ORTHO05D000288 3.3e-06 55.8 62 46.8
PRCOL_00000229 Prasinoderma coloniale HOM05D000803 ORTHO05D007008 4.3e-06 55.5 68 35.3
TWI32G0734 Tripterygium wilfordii HOM05D000803 ORTHO05D007008 4.3e-06 55.5 69 37.7
Nn1g06068 Nelumbo nucifera HOM05D000803 ORTHO05D007008 5.6e-06 55.1 78 33.3
PRCOL_00004653 Prasinoderma coloniale HOM05D006056 ORTHO05D007136 5.6e-06 55.1 75 33.3
VMungo0720G1024 Vigna mungo HOM05D000803 ORTHO05D009288 5.6e-06 55.1 90 33.3
AT4G12170 Arabidopsis thaliana HOM05D000803 ORTHO05D011944 7.3e-06 54.7 70 47.1
Carub.0001s3456 Capsella rubella HOM05D000803 ORTHO05D007008 7.3e-06 54.7 71 35.2
DCAR_010094 Daucus carota HOM05D000803 ORTHO05D007008 7.3e-06 54.7 58 41.4
Manes.02G180500 Manihot esculenta HOM05D000803 ORTHO05D007008 7.3e-06 54.7 65 40.0
Hund17447 Selenicereus undatus HOM05D000803 ORTHO05D007008 7.3e-06 54.7 65 36.9
Thecc.02G157100 Theobroma cacao HOM05D000803 ORTHO05D009288 7.3e-06 54.7 94 35.1
arahy.Tifrunner.gnm1.ann1.12I364 Arachis hypogaea HOM05D000803 ORTHO05D007008 9.6e-06 54.3 71 36.6
CARHR035380 Cardamine hirsuta HOM05D000803 ORTHO05D007008 9.6e-06 54.3 71 36.6
Oeu006340.1 Olea europaea HOM05D000803 ORTHO05D009288 9.6e-06 54.3 60 38.3
SGA_v2.0_scaffold306G48029 Striga asiatica HOM05D000803 ORTHO05D009288 9.6e-06 54.3 40 57.5
Zm00001eb140270 Zea mays HOM05D000803 ORTHO05D007008 9.6e-06 54.3 140 32.9


User provided reference genes

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