Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb042060 Zea mays HOM05D003721 ORTHO05D004303 0.0e+00 1241.1 720 100.0
Os08g0386900 Oryza sativa ssp. japonica HOM05D003721 ORTHO05D004303 2.3e-142 510.4 346 85.0
TAR629G3186 Trochodendron aralioides HOM05D003721 ORTHO05D004303 4.2e-136 489.6 770 45.6
Nn1g01721 Nelumbo nucifera HOM05D003721 ORTHO05D004303 1.0e-134 485.0 765 45.5
HPP92_023080 Vanilla planifolia HOM05D003721 ORTHO05D004303 3.9e-134 483.0 731 45.8
COL.COLO4_06374 Corchorus olitorius HOM05D003721 ORTHO05D004303 1.6e-132 477.6 745 47.4
CSS0014201 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 4.1e-131 473.0 744 44.4
CSS0038344 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 9.0e-131 471.9 746 44.6
Thecc.01G351200 Theobroma cacao HOM05D003721 ORTHO05D004303 1.0e-129 468.4 743 48.6
MBI07_g11740_MAGBIO Magnolia biondii HOM05D003721 ORTHO05D004303 5.0e-129 466.1 765 48.1
PSO170G3080 Papaver somniferum HOM05D003721 ORTHO05D004303 4.2e-128 463.0 764 43.2
PSO063G0643 Papaver somniferum HOM05D003721 ORTHO05D004303 2.1e-127 460.7 764 45.3
Sopen01g039000 Solanum pennellii HOM05D003721 ORTHO05D004303 2.7e-127 460.3 731 44.9
Solyc01g095210.3 Solanum lycopersicum HOM05D003721 ORTHO05D004303 3.6e-127 459.9 732 45.1
Atru.chr5.592 Acer truncatum HOM05D003721 ORTHO05D004303 6.1e-127 459.1 762 42.3
Duzib133G0509 Durio zibethinus HOM05D003721 ORTHO05D004303 1.4e-126 458.0 753 46.7
Peaxi162Scf00020g01717 Petunia axillaris HOM05D003721 ORTHO05D004303 1.8e-126 457.6 730 44.5
CANSAT94G0013 Cannabis sativa HOM05D003721 ORTHO05D004303 2.2e-124 450.7 684 45.8
Manes.07G084500 Manihot esculenta HOM05D003721 ORTHO05D004303 2.2e-124 450.7 760 43.7
Dinv32529 Davidia involucrata HOM05D003721 ORTHO05D004303 9.1e-123 445.3 756 43.5
Hund16678 Selenicereus undatus HOM05D003721 ORTHO05D004303 1.5e-122 444.5 677 47.9
QL04p055909 Quercus lobata HOM05D003721 ORTHO05D004303 2.6e-122 443.7 753 42.9
Sc23g0002500 Simmondsia chinensis HOM05D003721 ORTHO05D004303 4.5e-122 443.0 746 46.6
Gohir.D12G110000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.0e-121 441.8 686 47.8
TWI59G1183 Tripterygium wilfordii HOM05D003721 ORTHO05D004303 1.7e-121 441.0 700 44.7
Cc02_g38690 Coffea canephora HOM05D003721 ORTHO05D004303 2.9e-121 440.3 705 46.1
CAN.G78.136 Capsicum annuum HOM05D003721 ORTHO05D004303 2.5e-120 437.2 734 45.9
Dinv43871 Davidia involucrata HOM05D003721 ORTHO05D004303 9.4e-120 435.3 756 43.7
Cfa003861 Carpinus fangiana HOM05D003721 ORTHO05D004303 1.2e-119 434.9 757 42.3
VMungo0331G1476 Vigna mungo HOM05D003721 ORTHO05D004303 1.2e-119 434.9 742 42.0
Glyma.09G253700 Glycine max HOM05D003721 ORTHO05D004303 6.1e-119 432.6 687 44.4
Potri.014G091300 Populus trichocarpa HOM05D003721 ORTHO05D004303 3.9e-118 429.9 752 43.0
Glyma.07G062500 Glycine max HOM05D003721 ORTHO05D004303 8.8e-118 428.7 745 40.7
CSS0042065 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 1.5e-117 427.9 731 43.8
Potri.002G165500 Populus trichocarpa HOM05D003721 ORTHO05D004303 1.5e-117 427.9 695 43.9
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 2.0e-117 427.6 718 45.4
Gohir.A11G093000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 4.4e-117 426.4 737 44.8
Glyma.18G239200 Glycine max HOM05D003721 ORTHO05D004303 5.7e-117 426.0 736 42.5
Lalb_Chr17g0338961 Lupinus albus HOM05D003721 ORTHO05D004303 7.4e-117 425.6 751 40.6
ATR1093G009 Amborella trichopoda HOM05D003721 ORTHO05D004303 1.3e-116 424.9 773 44.1
GSVIVG01027009001 Vitis vinifera HOM05D003721 ORTHO05D004303 1.3e-116 424.9 709 45.8
Lj7A506T70 Lonicera japonica HOM05D003721 ORTHO05D004303 3.7e-116 423.3 690 45.7
Sabra14G0066200 Salix brachista HOM05D003721 ORTHO05D004303 3.7e-116 423.3 777 41.1
ECA240G1536 Erigeron canadensis HOM05D003721 ORTHO05D004303 1.4e-115 421.4 665 44.2
CiPaw.01G068800 Carya illinoinensis HOM05D003721 ORTHO05D004303 2.4e-115 420.6 766 44.6
AUR62004419 Chenopodium quinoa HOM05D003721 ORTHO05D004303 2.4e-115 420.6 702 45.3
Nitab4.5_0000915g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 2.4e-115 420.6 663 44.8
FAN03G0785 Fragaria x ananassa HOM05D003721 ORTHO05D004303 4.1e-115 419.9 727 42.8
Rhsim07G0009400 Rhododendron simsii HOM05D003721 ORTHO05D004303 9.1e-115 418.7 741 41.7
CDE02G2110 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 1.5e-114 417.9 742 43.0
Ciclev10018933m.g Citrus clementina HOM05D003721 ORTHO05D004303 3.5e-114 416.8 752 41.4
AUR62022625 Chenopodium quinoa HOM05D003721 ORTHO05D004303 2.2e-113 414.1 702 44.9
arahy.Tifrunner.gnm1.ann1.X01UQ7 Arachis hypogaea HOM05D003721 ORTHO05D004303 1.4e-112 411.4 667 42.3
DCAR_008641 Daucus carota HOM05D003721 ORTHO05D004303 4.2e-112 409.8 692 43.8
TPR.G29569 Trifolium pratense HOM05D003721 ORTHO05D004303 5.5e-112 409.5 724 40.5
Nitab4.5_0003501g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 9.4e-112 408.7 665 45.7
Sed0001790 Sechium edule HOM05D003721 ORTHO05D004303 1.2e-111 408.3 688 44.2
FAN10G1929 Fragaria x ananassa HOM05D003721 ORTHO05D004303 3.6e-111 406.8 727 41.5
Lj1g0019249 Lotus japonicus HOM05D003721 ORTHO05D004303 4.7e-111 406.4 699 42.5
arahy.Tifrunner.gnm1.ann1.J8U9TP Arachis hypogaea HOM05D003721 ORTHO05D004303 6.1e-111 406.0 621 44.0
Ca_07946_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 3.9e-110 403.3 748 39.8
MD07G1130300 Malus domestica HOM05D003721 ORTHO05D004303 5.2e-110 402.9 744 44.1
EL10Ac1g00346 Beta vulgaris HOM05D003721 ORTHO05D004303 8.8e-110 402.1 733 44.7
FvH4_7g15532 Fragaria vesca HOM05D003721 ORTHO05D004303 8.8e-110 402.1 741 41.6
FAN10G1794 Fragaria x ananassa HOM05D003721 ORTHO05D004303 8.8e-110 402.1 727 42.0
Actinidia20169 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.1e-109 401.7 745 44.7
FAN06G3247 Fragaria x ananassa HOM05D003721 ORTHO05D004303 2.6e-109 400.6 741 41.4
CDE08G1001 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 3.3e-109 400.2 715 42.1
vmacro13221 Vaccinium macrocarpon HOM05D003721 ORTHO05D004303 3.7e-108 396.7 762 41.9
Duzib138G0478 Durio zibethinus HOM05D003721 ORTHO05D004303 8.2e-108 395.6 644 44.3
RcHm_v2.0_Chr1g0357861 Rosa chinensis HOM05D003721 ORTHO05D004303 1.1e-107 395.2 732 41.1
FAN06G4946 Fragaria x ananassa HOM05D003721 ORTHO05D004303 2.4e-107 394.0 662 43.2
Glyma.16G030600 Glycine max HOM05D003721 ORTHO05D004303 5.3e-107 392.9 725 39.3
CsaV3_6G000920 Cucumis sativus L. HOM05D003721 ORTHO05D004303 5.9e-106 389.4 758 42.6
Cpa.g.sc11.59 Carica papaya HOM05D003721 ORTHO05D004303 7.7e-106 389.0 499 50.3
Aqoxy5G04062 Aquilegia oxysepala HOM05D003721 ORTHO05D004303 1.3e-105 388.3 623 46.5
Phvul.010G105500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 1.7e-105 387.9 732 40.2
PGR031G3178 Punica granatum HOM05D003721 ORTHO05D004303 3.8e-105 386.7 693 41.8
Prupe.2G178900 Prunus persica HOM05D003721 ORTHO05D004303 1.9e-104 384.4 752 41.5
Gohir.A12G106100 Gossypium hirsutum HOM05D003721 ORTHO05D004303 5.5e-104 382.9 734 42.9
Eucgr.D02329 Eucalyptus grandis HOM05D003721 ORTHO05D004303 1.8e-102 377.9 757 40.7
Medtr7g079200 Medicago truncatula HOM05D003721 ORTHO05D004303 4.4e-101 373.2 727 37.7
arahy.Tifrunner.gnm1.ann1.QXLJ4L Arachis hypogaea HOM05D003721 ORTHO05D004303 5.7e-101 372.9 695 42.2
Sed0002636 Sechium edule HOM05D003721 ORTHO05D004303 5.7e-101 372.9 736 40.4
Gorai.008G119300 Gossypium raimondii HOM05D003721 ORTHO05D004303 2.2e-100 370.9 681 44.3
Gorai.007G104100 Gossypium raimondii HOM05D003721 ORTHO05D004303 2.8e-100 370.5 627 45.1
MELO3C021177.2 Cucumis melo HOM05D003721 ORTHO05D004303 1.1e-99 368.6 594 47.3
Medtr8g028445 Medicago truncatula HOM05D003721 ORTHO05D004303 1.4e-99 368.2 706 42.5
arahy.Tifrunner.gnm1.ann1.M56506 Arachis hypogaea HOM05D003721 ORTHO05D004303 3.1e-99 367.1 696 41.8
Ah.05g180090 Amaranthus hybridus HOM05D003721 ORTHO05D004303 5.3e-99 366.3 743 42.1
unitig_52.g17061 Utricularia gibba HOM05D003721 ORTHO05D004303 3.8e-97 360.1 676 40.4
SEGI_16602 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 6.5e-97 359.4 341 61.9
Ca_03491_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 1.6e-95 354.8 707 41.4
Thhalv10005812m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 4.7e-95 353.2 683 40.1
HanXRQChr06g0166991 Helianthus annuus HOM05D003721 ORTHO05D004303 6.1e-95 352.8 677 40.6
Sp5g01840 Schrenkiella parvula HOM05D003721 ORTHO05D004303 4.0e-94 350.1 729 38.3
Mapoly0053s0042 Marchantia polymorpha HOM05D003721 ORTHO05D004303 8.8e-94 349.0 734 36.5
ClCG06G003380 Citrullus lanatus HOM05D003721 ORTHO05D004303 2.0e-93 347.8 766 41.0
BraA09t40785Z Brassica rapa HOM05D003721 ORTHO05D004303 9.8e-93 345.5 682 39.4
A09p53630 Brassica napus HOM05D003721 ORTHO05D004303 1.7e-92 344.7 681 39.5
C06p27570 Brassica napus HOM05D003721 ORTHO05D004303 3.7e-92 343.6 679 38.6
SalBow3G1665 Salvia bowleyana HOM05D003721 ORTHO05D004303 1.1e-91 342.0 681 42.1
BcaC07g40669 Brassica carinata HOM05D003721 ORTHO05D004303 1.8e-91 341.3 683 39.7
C08p36410 Brassica napus HOM05D003721 ORTHO05D004303 2.4e-91 340.9 682 39.7
Lalb_Chr04g0259321 Lupinus albus HOM05D003721 ORTHO05D004303 2.4e-91 340.9 464 47.0
BolC8t51224H Brassica oleracea HOM05D003721 ORTHO05D004303 4.1e-91 340.1 682 39.7
Migut.B01806 Erythranthe guttata HOM05D003721 ORTHO05D004303 5.4e-91 339.7 678 40.3
AT2G46180 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 9.1e-91 339.0 759 37.7
BolC6t37925H Brassica oleracea HOM05D003721 ORTHO05D004303 1.2e-90 338.6 611 39.9
Phvul.008G057500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 3.5e-90 337.0 629 39.9
TPR.G18168 Trifolium pratense HOM05D003721 ORTHO05D004303 1.3e-89 335.1 732 38.9
A07p25580 Brassica napus HOM05D003721 ORTHO05D004303 1.5e-88 331.6 676 37.7
BcaC07g40653 Brassica carinata HOM05D003721 ORTHO05D004303 3.3e-88 330.5 688 39.5
BraA07t30199Z Brassica rapa HOM05D003721 ORTHO05D004303 2.3e-86 324.3 689 36.7
AL5G43940 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 5.2e-86 323.2 679 39.5
VMungo1383G3272 Vigna mungo HOM05D003721 ORTHO05D004303 2.6e-85 320.9 677 37.7
BcaB02g07370 Brassica carinata HOM05D003721 ORTHO05D004303 3.4e-85 320.5 683 38.7
BcaC08g45136 Brassica carinata HOM05D003721 ORTHO05D004303 5.7e-85 319.7 682 37.2
AT3G61570 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 1.7e-84 318.2 705 39.0
PGSC0003DMG400000197 Solanum tuberosum HOM05D003721 ORTHO05D004303 1.7e-84 318.2 337 56.7
AL4G45430 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 1.4e-83 315.1 747 39.2
Sp5g32820 Schrenkiella parvula HOM05D003721 ORTHO05D004303 2.4e-83 314.3 727 39.9
Psat3g105680 Pisum sativum HOM05D003721 ORTHO05D004303 2.0e-82 311.2 622 38.4
Gohir.D11G097866 Gossypium hirsutum HOM05D003721 ORTHO05D004303 2.7e-82 310.8 603 43.6
MD01G1072600 Malus domestica HOM05D003721 ORTHO05D004303 2.5e-80 304.3 757 38.3
MSTRG.20868 Avicennia marina HOM05D003721 ORTHO05D004303 2.1e-79 301.2 736 39.3
BcaC07g42682 Brassica carinata HOM05D003721 ORTHO05D004303 2.1e-79 301.2 658 36.9
Thhalv10001332m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 2.8e-79 300.8 696 40.4
Lsat_1_v5_gn_3_138600 Lactuca sativa HOM05D003721 ORTHO05D004303 8.0e-79 299.3 728 36.8
CARHR141460 Cardamine hirsuta HOM05D003721 ORTHO05D004303 2.3e-78 297.7 455 45.7
Haze_15580 Corylus avellana HOM05D003721 ORTHO05D004303 7.5e-77 292.7 611 39.3
Haze_15575 Corylus avellana HOM05D003721 ORTHO05D004303 1.3e-76 292.0 611 39.1
Aa31LG1G27570 Aethionema arabicum HOM05D003721 ORTHO05D004303 5.4e-75 286.6 728 37.8
Oeu010635.1 Olea europaea HOM05D003721 ORTHO05D004303 1.2e-71 275.4 690 36.4
THA.LOC104817323 Tarenaya hassleriana HOM05D003721 ORTHO05D004303 1.4e-70 271.9 764 35.6
Carub.0004s2886 Capsella rubella HOM05D003721 ORTHO05D004303 3.2e-67 260.8 746 36.1
Pp3c12_14500 Physcomitrium patens HOM05D003721 ORTHO05D004303 4.7e-63 246.9 368 46.2
BcaC07g42673 Brassica carinata HOM05D003721 ORTHO05D004303 1.4e-62 245.4 683 34.3
Pp3c3_18730 Physcomitrium patens HOM05D003721 ORTHO05D004303 7.3e-56 223.0 676 33.7
BcaC07g40657 Brassica carinata HOM05D003721 ORTHO05D004303 6.8e-54 216.5 251 53.4
QL01p002178 Quercus lobata HOM05D003721 ORTHO05D004303 2.6e-53 214.5 322 46.6
AagrBONN_evm.TU.Sc2ySwM_369.3 Anthoceros agrestis HOM05D003721 ORTHO05D004303 1.2e-50 205.7 325 41.5
Sabra02G0146000 Salix brachista HOM05D003721 ORTHO05D004303 6.9e-46 189.9 598 31.8
TPR.G35781 Trifolium pratense HOM05D003721 ORTHO05D004303 1.5e-40 172.2 387 36.4
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 1.6e-39 168.7 402 35.3
Haze_15579 Corylus avellana HOM05D003721 ORTHO05D004303 2.9e-36 157.9 148 61.5
SGA_v2.0_scaffold4G02274 Striga asiatica HOM05D003721 ORTHO05D004303 9.3e-27 126.3 183 48.1
Haze_15574 Corylus avellana HOM05D003721 ORTHO05D004303 3.0e-25 121.3 127 55.9
arahy.Tifrunner.gnm1.ann1.LL4IHI Arachis hypogaea HOM05D003721 ORTHO05D004303 6.7e-25 120.2 144 49.3
Actinidia10078 Actinidia chinensis HOM05D003721 ORTHO05D004303 4.3e-24 117.5 382 32.7
BcaC08g45231 Brassica carinata HOM05D003721 ORTHO05D004303 5.7e-24 117.1 138 50.7
MCO16G164 Micromonas commoda HOM05D003721 ORTHO05D004303 5.7e-16 90.5 306 28.4
CBR_g40304 Chara braunii HOM05D001539 ORTHO05D000937 7.4e-16 90.1 80 58.8
SHI13345 Sapria himalayana HOM05D003721 ORTHO05D004303 9.7e-16 89.7 119 47.1
Zm00001eb251850 Zea mays HOM05D003721 ORTHO05D004303 1.6e-15 89.0 49 98.0
Hma1.2p1_0623F.1_g191170 Hydrangea macrophylla HOM05D003721 ORTHO05D004303 3.4e-13 81.3 372 28.5
Actinidia21288 Actinidia chinensis HOM05D003721 ORTHO05D004303 6.5e-12 77.0 66 62.1
Cre12.g495800 Chlamydomonas reinhardtii HOM05D003721 ORTHO05D004303 1.1e-11 76.3 204 30.4
Lalb_Chr04g0259331 Lupinus albus HOM05D003721 ORTHO05D004303 9.7e-08 63.2 118 38.1


User provided reference genes

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