Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb041900 Zea mays HOM05D004935 ORTHO05D005676 8.6e-112 407.1 227 100.0
Zm00001eb179280 Zea mays HOM05D004935 ORTHO05D005676 1.5e-92 343.2 227 85.5
Rhsim10G0182800 Rhododendron simsii HOM05D004935 ORTHO05D005676 5.1e-48 195.3 196 54.1
Aqoxy3G04045 Aquilegia oxysepala HOM05D004935 ORTHO05D005676 1.5e-47 193.7 191 55.5
Prupe.3G163400 Prunus persica HOM05D004935 ORTHO05D005676 5.7e-47 191.8 219 52.1
vmacro20490 Vaccinium macrocarpon HOM05D004935 ORTHO05D005676 1.3e-46 190.7 190 53.7
Actinidia01601 Actinidia chinensis HOM05D004935 ORTHO05D005676 3.7e-46 189.1 210 51.0
Actinidia17180 Actinidia chinensis HOM05D004935 ORTHO05D005676 6.3e-46 188.3 194 52.6
MBI13_g35399_MAGBIO Magnolia biondii HOM05D004935 ORTHO05D005676 5.3e-45 185.3 192 55.7
RcHm_v2.0_Chr3g0492651 Rosa chinensis HOM05D004935 ORTHO05D005676 7.0e-45 184.9 202 49.5
FAN28G0886 Fragaria x ananassa HOM05D004935 ORTHO05D005676 4.5e-44 182.2 186 53.2
Gohir.A07G073800 Gossypium hirsutum HOM05D004935 ORTHO05D005676 7.7e-44 181.4 189 53.4
CSS0027542 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 1.0e-43 181.0 216 46.8
Lj4A255T23 Lonicera japonica HOM05D004935 ORTHO05D005676 1.0e-43 181.0 191 50.3
Nitab4.5_0002465g0010 Nicotiana tabacum HOM05D004935 ORTHO05D005676 1.3e-43 180.6 190 50.5
Thecc.04G001700 Theobroma cacao HOM05D004935 ORTHO05D005676 1.3e-43 180.6 191 53.9
COL.COLO4_19777 Corchorus olitorius HOM05D004935 ORTHO05D005676 2.9e-43 179.5 196 51.5
FvH4_1g28640 Fragaria vesca HOM05D004935 ORTHO05D005676 5.0e-43 178.7 182 53.8
CiPaw.04G048500 Carya illinoinensis HOM05D004935 ORTHO05D005676 6.5e-43 178.3 202 50.0
Hma1.2p1_0034F.1_g021280 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 6.5e-43 178.3 194 48.5
Nitab4.5_0001088g0190 Nicotiana tabacum HOM05D004935 ORTHO05D005676 8.5e-43 177.9 187 50.8
CANSAT78G0803 Cannabis sativa HOM05D004935 ORTHO05D005676 1.9e-42 176.8 194 51.5
Dinv28224 Davidia involucrata HOM05D004935 ORTHO05D005676 2.5e-42 176.4 217 47.5
Duzib133G0236 Durio zibethinus HOM05D004935 ORTHO05D005676 5.5e-42 175.3 188 52.7
Nn4g24526 Nelumbo nucifera HOM05D004935 ORTHO05D005676 5.5e-42 175.3 188 54.3
Potri.004G082300 Populus trichocarpa HOM05D004935 ORTHO05D005676 1.2e-41 174.1 209 49.3
CiPaw.03G075500 Carya illinoinensis HOM05D004935 ORTHO05D005676 1.6e-41 173.7 198 50.0
Ca_06292_v3 Cicer arietinum L. HOM05D004935 ORTHO05D005676 1.6e-41 173.7 184 54.3
Duzib138G1863 Durio zibethinus HOM05D004935 ORTHO05D005676 1.6e-41 173.7 194 52.1
MD09G1265200 Malus domestica HOM05D004935 ORTHO05D005676 1.6e-41 173.7 198 48.5
HPP92_017642 Vanilla planifolia HOM05D004935 ORTHO05D005676 1.6e-41 173.7 205 53.2
Peaxi162Scf00078g00178 Petunia axillaris HOM05D004935 ORTHO05D005676 2.7e-41 172.9 208 46.6
Lj6g0018793 Lotus japonicus HOM05D004935 ORTHO05D005676 3.6e-41 172.6 193 53.4
Medtr5g091900 Medicago truncatula HOM05D004935 ORTHO05D005676 4.7e-41 172.2 184 52.2
PGSC0003DMG400013258 Solanum tuberosum HOM05D004935 ORTHO05D005676 4.7e-41 172.2 211 46.4
Dinv19063 Davidia involucrata HOM05D004935 ORTHO05D005676 8.0e-41 171.4 165 55.2
MD17G1261400 Malus domestica HOM05D004935 ORTHO05D005676 8.0e-41 171.4 198 49.5
Manes.02G079800 Manihot esculenta HOM05D004935 ORTHO05D005676 8.0e-41 171.4 188 50.5
Gohir.D07G078500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.0e-40 171.0 189 50.8
QL02p059972 Quercus lobata HOM05D004935 ORTHO05D005676 1.8e-40 170.2 187 49.7
Solyc11g011760.3 Solanum lycopersicum HOM05D004935 ORTHO05D005676 1.8e-40 170.2 199 48.7
Sopen11g006600 Solanum pennellii HOM05D004935 ORTHO05D005676 2.3e-40 169.9 201 48.8
MSTRG.3688 Avicennia marina HOM05D004935 ORTHO05D005676 4.0e-40 169.1 193 47.2
Hma1.2p1_0158F.1_g069850 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 4.0e-40 169.1 196 51.0
arahy.Tifrunner.gnm1.ann1.5XP26J Arachis hypogaea HOM05D004935 ORTHO05D005676 5.2e-40 168.7 189 52.4
CsaV3_5G024270 Cucumis sativus L. HOM05D004935 ORTHO05D005676 5.2e-40 168.7 204 48.0
Migut.K01110 Erythranthe guttata HOM05D004935 ORTHO05D005676 8.8e-40 167.9 197 47.2
TPR.G12527 Trifolium pratense HOM05D004935 ORTHO05D005676 1.1e-39 167.5 187 49.7
ClCG01G008740 Citrullus lanatus HOM05D004935 ORTHO05D005676 1.5e-39 167.2 188 51.6
FAN26G0615 Fragaria x ananassa HOM05D004935 ORTHO05D005676 1.5e-39 167.2 204 48.5
Manes.01G121800 Manihot esculenta HOM05D004935 ORTHO05D005676 2.0e-39 166.8 186 51.1
TAR622G0462 Trochodendron aralioides HOM05D004935 ORTHO05D005676 2.0e-39 166.8 191 50.3
Gorai.001G082900 Gossypium raimondii HOM05D004935 ORTHO05D005676 3.3e-39 166.0 191 50.3
Eucgr.J01625 Eucalyptus grandis HOM05D004935 ORTHO05D005676 7.5e-39 164.9 220 46.8
SGA_v2.0_scaffold45G17134 Striga asiatica HOM05D004935 ORTHO05D005676 7.5e-39 164.9 253 41.5
THA.LOC104820912 Tarenaya hassleriana HOM05D004935 ORTHO05D005676 7.5e-39 164.9 216 45.8
PGR042G3611 Punica granatum HOM05D004935 ORTHO05D005676 9.7e-39 164.5 183 55.2
Lalb_Chr10g0104161 Lupinus albus HOM05D004935 ORTHO05D005676 3.7e-38 162.5 199 48.7
arahy.Tifrunner.gnm1.ann1.8KIW52 Arachis hypogaea HOM05D004935 ORTHO05D005676 4.8e-38 162.2 205 48.3
Glyma.18G042900 Glycine max HOM05D004935 ORTHO05D005676 4.8e-38 162.2 187 49.2
PSO170G5471 Papaver somniferum HOM05D004935 ORTHO05D005676 6.3e-38 161.8 199 47.2
TWI53G1040 Tripterygium wilfordii HOM05D004935 ORTHO05D005676 6.3e-38 161.8 193 48.7
Ciclev10029179m.g Citrus clementina HOM05D004935 ORTHO05D005676 8.2e-38 161.4 190 50.0
Gohir.A11G169300 Gossypium hirsutum HOM05D004935 ORTHO05D005676 2.4e-37 159.8 194 51.0
Lalb_Chr18g0053611 Lupinus albus HOM05D004935 ORTHO05D005676 2.4e-37 159.8 186 50.0
MELO3C025122.2 Cucumis melo HOM05D004935 ORTHO05D005676 4.1e-37 159.1 216 44.9
Glyma.11G213800 Glycine max HOM05D004935 ORTHO05D005676 5.3e-37 158.7 184 49.5
Sabra04G0054800 Salix brachista HOM05D004935 ORTHO05D005676 7.0e-37 158.3 203 46.3
Phvul.001G228000 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 9.1e-37 157.9 192 48.4
PSO407G0171 Papaver somniferum HOM05D004935 ORTHO05D005676 1.6e-36 157.1 198 47.0
SalBow3G4475 Salvia bowleyana HOM05D004935 ORTHO05D005676 1.6e-36 157.1 177 48.6
Atru.chr1.1949 Acer truncatum HOM05D004935 ORTHO05D005676 2.0e-36 156.8 154 54.5
VMungo1383G0526 Vigna mungo HOM05D004935 ORTHO05D005676 2.6e-36 156.4 187 48.1
Actinidia28792 Actinidia chinensis HOM05D004935 ORTHO05D005676 3.5e-36 156.0 222 42.8
Gorai.007G188100 Gossypium raimondii HOM05D004935 ORTHO05D005676 1.0e-35 154.5 194 49.0
Gohir.D11G175500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 5.0e-35 152.1 194 48.5
Medtr5g077280 Medicago truncatula HOM05D004935 ORTHO05D005676 5.0e-35 152.1 161 57.1
Cc07_g13020 Coffea canephora HOM05D004935 ORTHO05D005676 6.5e-35 151.8 190 48.4
Cfa007772 Carpinus fangiana HOM05D004935 ORTHO05D005676 8.5e-35 151.4 251 38.6
LjContig00141g0002036 Lotus japonicus HOM05D004935 ORTHO05D005676 8.5e-35 151.4 157 55.4
unitig_748.g8451 Utricularia gibba HOM05D004935 ORTHO05D005676 1.9e-34 150.2 203 45.3
Lalb_Chr17g0345951 Lupinus albus HOM05D004935 ORTHO05D005676 2.5e-34 149.8 199 45.7
Oeu032311.1 Olea europaea HOM05D004935 ORTHO05D005676 2.5e-34 149.8 191 43.5
Psat2g014520 Pisum sativum HOM05D004935 ORTHO05D005676 7.2e-34 148.3 162 53.7
CDE11G1189 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 1.2e-33 147.5 194 46.4
Hund13074 Selenicereus undatus HOM05D004935 ORTHO05D005676 1.6e-33 147.1 199 43.2
Psat2g044600 Pisum sativum HOM05D004935 ORTHO05D005676 2.1e-33 146.7 161 54.7
TPR.G9990 Trifolium pratense HOM05D004935 ORTHO05D005676 2.1e-33 146.7 161 53.4
arahy.Tifrunner.gnm1.ann1.63R0A2 Arachis hypogaea HOM05D004935 ORTHO05D005676 1.4e-32 144.1 205 45.4
AT5G16550 Arabidopsis thaliana HOM05D004935 ORTHO05D005676 1.8e-32 143.7 213 42.3
AL6G27510 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 4.0e-32 142.5 212 42.5
BolC3t13402H Brassica oleracea HOM05D004935 ORTHO05D005676 5.2e-32 142.1 199 42.7
CDE05G2820 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 6.8e-32 141.7 193 45.1
Lsat_1_v5_gn_8_111520 Lactuca sativa HOM05D004935 ORTHO05D005676 6.8e-32 141.7 183 42.1
Oeu029081.1 Olea europaea HOM05D004935 ORTHO05D005676 6.8e-32 141.7 200 44.0
Sc11g0004790 Simmondsia chinensis HOM05D004935 ORTHO05D005676 2.0e-31 140.2 223 42.2
BcaC04g18869 Brassica carinata HOM05D004935 ORTHO05D005676 1.7e-30 137.1 185 44.3
BcaC03g18499 Brassica carinata HOM05D004935 ORTHO05D005676 2.2e-30 136.7 192 43.8
C09p60610 Brassica napus HOM05D004935 ORTHO05D005676 2.2e-30 136.7 184 45.1
Carub.0006s1475 Capsella rubella HOM05D004935 ORTHO05D005676 2.8e-30 136.3 164 47.6
A02p03620 Brassica napus HOM05D004935 ORTHO05D005676 3.7e-30 136.0 198 42.9
C03p09070 Brassica napus HOM05D004935 ORTHO05D005676 4.8e-30 135.6 195 42.1
Phvul.008G238800 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 4.8e-30 135.6 147 55.8
BolC9t58894H Brassica oleracea HOM05D004935 ORTHO05D005676 6.3e-30 135.2 200 43.5
Glyma.02G242200 Glycine max HOM05D004935 ORTHO05D005676 1.8e-29 133.7 147 53.1
BcaB01g04976 Brassica carinata HOM05D004935 ORTHO05D005676 3.1e-29 132.9 147 50.3
BcaB08g36840 Brassica carinata HOM05D004935 ORTHO05D005676 7.0e-29 131.7 218 41.3
A10p22660 Brassica napus HOM05D004935 ORTHO05D005676 7.0e-29 131.7 220 39.5
BraA10t44327Z Brassica rapa HOM05D004935 ORTHO05D005676 7.0e-29 131.7 220 39.5
BraA02t05331Z Brassica rapa HOM05D004935 ORTHO05D005676 9.1e-29 131.3 198 43.4
arahy.Tifrunner.gnm1.ann1.PKWW5Q Arachis hypogaea HOM05D004935 ORTHO05D005676 7.7e-28 128.3 163 52.1
VMungo0647G1435 Vigna mungo HOM05D004935 ORTHO05D005676 1.3e-27 127.5 147 53.7
GSVIVG01026318001 Vitis vinifera HOM05D004935 ORTHO05D005676 1.7e-27 127.1 105 65.7
Lj2A514G44 Lonicera japonica HOM05D004935 ORTHO05D005676 9.4e-26 121.3 120 54.2
ECA246G1322 Erigeron canadensis HOM05D004935 ORTHO05D005676 1.0e-24 117.9 172 42.4
Sp6g27610 Schrenkiella parvula HOM05D004935 ORTHO05D005676 1.4e-24 117.5 218 40.8
BcaC03g18497 Brassica carinata HOM05D004935 ORTHO05D005676 3.0e-24 116.3 202 37.1
C02p08410 Brassica napus HOM05D004935 ORTHO05D005676 3.0e-24 116.3 202 37.1
BolC2t06759H Brassica oleracea HOM05D004935 ORTHO05D005676 3.0e-24 116.3 202 37.1
TAR629G3076 Trochodendron aralioides HOM05D004935 ORTHO05D005676 8.8e-24 114.8 200 42.0
EL10Ac2g03209 Beta vulgaris HOM05D004935 ORTHO05D005676 2.0e-23 113.6 156 46.8
Oeu014715.1 Olea europaea HOM05D004935 ORTHO05D005676 4.4e-23 112.5 122 47.5
Aa31LG11G13100 Aethionema arabicum HOM05D004935 ORTHO05D005676 6.3e-22 108.6 209 36.8
Thhalv10014473m.g Eutrema salsugineum HOM05D004935 ORTHO05D005676 1.1e-21 107.8 206 39.3
HanXRQChr15g0489811 Helianthus annuus HOM05D004935 ORTHO05D005676 2.4e-21 106.7 194 36.1
Sed0000771 Sechium edule HOM05D004935 ORTHO05D005676 3.1e-21 106.3 192 38.0
Mapoly0035s0070 Marchantia polymorpha HOM05D004935 ORTHO05D005676 4.1e-21 105.9 159 39.0
AagrBONN_evm.TU.Sc2ySwM_117.2252 Anthoceros agrestis HOM05D004935 ORTHO05D005676 2.0e-20 103.6 148 44.6
Peaxi162Scf00085g00527 Petunia axillaris HOM05D004935 ORTHO05D005676 1.7e-19 100.5 91 56.0
DCAR_003418 Daucus carota HOM05D004935 ORTHO05D005676 7.2e-18 95.1 105 49.5
BraA03t10111Z Brassica rapa HOM05D000423 ORTHO05D005676 2.1e-17 93.6 179 36.9
Sc11g0004530 Simmondsia chinensis HOM05D004935 ORTHO05D005676 2.1e-17 93.6 223 36.3
A03p07850 Brassica napus HOM05D004935 ORTHO05D005676 6.1e-17 92.0 221 33.0
Zm00001eb099130 Zea mays HOM05D004935 ORTHO05D005676 6.1e-17 92.0 112 51.8
Haze_14300 Corylus avellana HOM05D004935 ORTHO05D005676 3.0e-16 89.7 238 30.3
AL92U10070 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 3.4e-15 86.3 128 43.0
Pp3c25_6290 Physcomitrium patens HOM05D004935 ORTHO05D005676 2.2e-14 83.6 161 36.6
AL3G36180 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 2.9e-14 83.2 95 50.5
AL6G14310 Arabidopsis lyrata HOM05D000097 ORTHO05D005676 1.7e-11 73.9 129 41.1
Medtr5g077270 Medicago truncatula HOM05D007893 ORTHO05D010042 3.0e-11 73.2 84 52.4
CARHR196680 Cardamine hirsuta HOM05D004935 ORTHO05D005676 1.6e-09 67.4 87 50.6
Cpa.g.sc178.1 Carica papaya HOM05D004935 ORTHO05D005676 1.8e-08 63.9 92 43.5
SEGI_39153 Sequoiadendron giganteum HOM05D004935 ORTHO05D005676 8.9e-08 61.6 114 34.2


User provided reference genes

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