Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb041720 Zea mays HOM05D005994 ORTHO05D007322 1.2e-95 353.2 177 100.0
Zm00001eb179550 Zea mays HOM05D005994 ORTHO05D007322 1.7e-14 83.6 55 76.4
Os08g0431500 Oryza sativa ssp. japonica HOM05D005994 ORTHO05D007322 1.9e-13 80.1 55 72.7
CDE12G0176 Ceratophyllum demersum HOM05D005994 ORTHO05D007322 4.2e-13 79.0 55 69.1
arahy.Tifrunner.gnm1.ann1.CR688Y Arachis hypogaea HOM05D005994 ORTHO05D007322 7.2e-13 78.2 55 69.1
arahy.Tifrunner.gnm1.ann1.R43TP7 Arachis hypogaea HOM05D005994 ORTHO05D007322 7.2e-13 78.2 55 69.1
TWI63G1647 Tripterygium wilfordii HOM05D005994 ORTHO05D007322 1.2e-12 77.4 55 67.3
Cc05_g14690 Coffea canephora HOM05D005994 ORTHO05D007322 1.6e-12 77.0 55 67.3
Migut.M01676 Erythranthe guttata HOM05D005994 ORTHO05D007322 1.6e-12 77.0 55 65.5
SGA_v2.0_scaffold168G38531 Striga asiatica HOM05D005994 ORTHO05D007322 2.1e-12 76.6 55 65.5
VMungo0540G2179 Vigna mungo HOM05D005994 ORTHO05D007322 2.1e-12 76.6 55 69.1
Ah.04g166430 Amaranthus hybridus HOM05D000063 ORTHO05D000906 3.5e-12 75.9 55 65.5
CiPaw.10G079600 Carya illinoinensis HOM05D005994 ORTHO05D007322 3.5e-12 75.9 55 65.5
Oeu005968.1 Olea europaea HOM05D005994 ORTHO05D007322 3.5e-12 75.9 55 65.5
Actinidia05033 Actinidia chinensis HOM05D005994 ORTHO05D007322 4.6e-12 75.5 55 67.3
CSS0045306 Camellia sinensis var. sinensis HOM05D005994 ORTHO05D007322 4.6e-12 75.5 55 67.3
DCAR_013214 Daucus carota HOM05D005994 ORTHO05D007322 4.6e-12 75.5 55 67.3
MD00G1058600 Malus domestica HOM05D005994 ORTHO05D007322 4.6e-12 75.5 55 65.5
Oeu005493.1 Olea europaea HOM05D005994 ORTHO05D007322 4.6e-12 75.5 55 63.6
Phvul.006G141600 Phaseolus vulgaris HOM05D005994 ORTHO05D007322 4.6e-12 75.5 55 67.3
PGR004G2260 Punica granatum HOM05D005994 ORTHO05D007322 4.6e-12 75.5 55 67.3
Sed0000308 Sechium edule HOM05D005994 ORTHO05D007322 4.6e-12 75.5 55 67.3
Actinidia00094 Actinidia chinensis HOM05D005994 ORTHO05D007322 6.1e-12 75.1 55 65.5
CsaV3_1G017030 Cucumis sativus L. HOM05D005994 ORTHO05D007322 6.1e-12 75.1 55 67.3
CsaV3_UNG053450 Cucumis sativus L. HOM05D005994 ORTHO05D007322 6.1e-12 75.1 55 67.3
Glyma.09G011900 Glycine max HOM05D005994 ORTHO05D007322 6.1e-12 75.1 55 65.5
Glyma.15G116500 Glycine max HOM05D005994 ORTHO05D007322 6.1e-12 75.1 55 65.5
PSO832G1566 Papaver somniferum HOM05D005994 ORTHO05D007322 6.1e-12 75.1 55 65.5
Rhsim06G0226700 Rhododendron simsii HOM05D005994 ORTHO05D007322 6.1e-12 75.1 55 65.5
Sed0000190 Sechium edule HOM05D005994 ORTHO05D007322 6.1e-12 75.1 55 67.3
Solyc07g065275.1 Solanum lycopersicum HOM05D005994 ORTHO05D007322 6.1e-12 75.1 55 67.3
PGSC0003DMG400022186 Solanum tuberosum HOM05D005994 ORTHO05D007322 6.1e-12 75.1 55 67.3
unitig_747.g21642 Utricularia gibba HOM05D005994 ORTHO05D007322 6.1e-12 75.1 55 63.6
Aqoxy4G02214 Aquilegia oxysepala HOM05D005994 ORTHO05D007322 7.9e-12 74.7 55 65.5
AT4G16450 Arabidopsis thaliana HOM05D005994 ORTHO05D007322 7.9e-12 74.7 55 67.3
BcaC06g33480 Brassica carinata HOM05D005994 ORTHO05D007322 7.9e-12 74.7 55 67.3
BcaC09g50351 Brassica carinata HOM05D005994 ORTHO05D007322 7.9e-12 74.7 55 67.3
BcaNung00192 Brassica carinata HOM05D005994 ORTHO05D007322 7.9e-12 74.7 55 67.3
A01p21090 Brassica napus HOM05D005994 ORTHO05D007322 7.9e-12 74.7 55 67.3
A03p49850 Brassica napus HOM05D005994 ORTHO05D007322 7.9e-12 74.7 55 67.3
C01p26360 Brassica napus HOM05D005994 ORTHO05D007322 7.9e-12 74.7 55 67.3
C07p47910 Brassica napus HOM05D005994 ORTHO05D007322 7.9e-12 74.7 55 67.3
BolC1t02582H Brassica oleracea HOM05D005994 ORTHO05D007322 7.9e-12 74.7 55 67.3
BolC7t45314H Brassica oleracea HOM05D005994 ORTHO05D007322 7.9e-12 74.7 55 67.3
BraA03t14080Z Brassica rapa HOM05D005994 ORTHO05D007322 7.9e-12 74.7 55 67.3
CAN.G337.28 Capsicum annuum HOM05D005994 ORTHO05D007322 7.9e-12 74.7 55 67.3
ClCG01G010630 Citrullus lanatus HOM05D005994 ORTHO05D007322 7.9e-12 74.7 55 65.5
MELO3C025540.2 Cucumis melo HOM05D005994 ORTHO05D007322 7.9e-12 74.7 55 65.5
FvH4_3g00660 Fragaria vesca HOM05D005994 ORTHO05D007322 7.9e-12 74.7 55 65.5
FAN25G0933 Fragaria x ananassa HOM05D005994 ORTHO05D007322 7.9e-12 74.7 55 65.5
Lalb_Chr03g0035721 Lupinus albus HOM05D005994 ORTHO05D007322 7.9e-12 74.7 68 57.4
PSO063G2191 Papaver somniferum HOM05D005994 ORTHO05D007322 7.9e-12 74.7 55 65.5
Peaxi162Scf00955g00216 Petunia axillaris HOM05D005994 ORTHO05D007322 7.9e-12 74.7 55 67.3
RcHm_v2.0_Chr5g0000881 Rosa chinensis HOM05D005994 ORTHO05D007322 7.9e-12 74.7 55 65.5
Sp7g15010 Schrenkiella parvula HOM05D005994 ORTHO05D007322 7.9e-12 74.7 55 67.3
Sopen07g033490 Solanum pennellii HOM05D005994 ORTHO05D007322 7.9e-12 74.7 55 65.5
ECA246G1213 Erigeron canadensis HOM05D005994 ORTHO05D007322 1.0e-11 74.3 55 65.5
Thhalv10026636m.g Eutrema salsugineum HOM05D005994 ORTHO05D007322 1.0e-11 74.3 55 65.5
Gohir.A06G204600 Gossypium hirsutum HOM05D005994 ORTHO05D007322 1.0e-11 74.3 55 63.6
Gohir.D06G216900 Gossypium hirsutum HOM05D005994 ORTHO05D007322 1.0e-11 74.3 55 63.6
Gorai.010G249300 Gossypium raimondii HOM05D005994 ORTHO05D007322 1.0e-11 74.3 55 63.6
Lsat_1_v5_gn_5_8041 Lactuca sativa HOM05D000063 ORTHO05D000906 1.0e-11 74.3 55 65.5
MD10G1336200 Malus domestica HOM05D005994 ORTHO05D007322 1.0e-11 74.3 55 65.5
Nitab4.5_0000163g0320 Nicotiana tabacum HOM05D005994 ORTHO05D007322 1.0e-11 74.3 55 65.5
Nitab4.5_0000461g0100 Nicotiana tabacum HOM05D005994 ORTHO05D007322 1.0e-11 74.3 55 65.5
Nitab4.5_0001750g0060 Nicotiana tabacum HOM05D005994 ORTHO05D007322 1.0e-11 74.3 55 65.5
TPR.G10599 Trifolium pratense HOM05D005994 ORTHO05D007322 1.0e-11 74.3 55 65.5
vmacro09668 Vaccinium macrocarpon HOM05D005994 ORTHO05D007322 1.0e-11 74.3 55 65.5
AL7G38530 Arabidopsis lyrata HOM05D005994 ORTHO05D007322 1.3e-11 73.9 55 67.3
MSTRG.14470 Avicennia marina HOM05D005994 ORTHO05D007322 1.3e-11 73.9 55 61.8
CANSAT56G3985 Cannabis sativa HOM05D005994 ORTHO05D007322 1.3e-11 73.9 55 67.3
Carub.0007s2505 Capsella rubella HOM05D005994 ORTHO05D007322 1.3e-11 73.9 55 67.3
Manes.09G081660 Manihot esculenta HOM05D005994 ORTHO05D007322 1.3e-11 73.9 55 65.5
vmacro11561 Vaccinium macrocarpon HOM05D005994 ORTHO05D007322 1.3e-11 73.9 55 63.6
Ah.06g181210 Amaranthus hybridus HOM05D005994 ORTHO05D007322 1.8e-11 73.6 55 65.5
MSTRG.13010 Avicennia marina HOM05D005994 ORTHO05D007322 1.8e-11 73.6 55 63.6
CARHR222840 Cardamine hirsuta HOM05D005994 ORTHO05D007322 1.8e-11 73.6 55 67.3
COL.COLO4_07784 Corchorus olitorius HOM05D005994 ORTHO05D007322 1.8e-11 73.6 55 63.6
Duzib235G0800 Durio zibethinus HOM05D005994 ORTHO05D007322 1.8e-11 73.6 55 65.5
Sc03g0008000 Simmondsia chinensis HOM05D005994 ORTHO05D007322 1.8e-11 73.6 55 65.5
THA.LOC104810390 Tarenaya hassleriana HOM05D005994 ORTHO05D007322 1.8e-11 73.6 55 65.5
Aa31LG2G12530 Aethionema arabicum HOM05D005994 ORTHO05D007322 2.3e-11 73.2 55 67.3
HanXRQChr08g0213481 Helianthus annuus HOM05D005994 ORTHO05D007322 2.3e-11 73.2 55 63.6
Lj6g0002817 Lotus japonicus HOM05D005994 ORTHO05D007322 2.3e-11 73.2 55 63.6
Medtr2g026500 Medicago truncatula HOM05D005994 ORTHO05D007322 2.3e-11 73.2 55 63.6
Nitab4.5_0005540g0030 Nicotiana tabacum HOM05D005994 ORTHO05D007322 2.3e-11 73.2 51 66.7
ATR0564G257 Amborella trichopoda HOM05D005994 ORTHO05D007322 3.0e-11 72.8 55 65.5
EL10Ac4g07614 Beta vulgaris HOM05D005994 ORTHO05D007322 3.0e-11 72.8 55 67.3
FAN21G1761 Fragaria x ananassa HOM05D005994 ORTHO05D007322 3.0e-11 72.8 55 63.6
Lalb_Chr19g0129971 Lupinus albus HOM05D005994 ORTHO05D007322 3.0e-11 72.8 68 55.9
Psat1g178480 Pisum sativum HOM05D005994 ORTHO05D007322 3.0e-11 72.8 55 63.6
TAR626G0394 Trochodendron aralioides HOM05D005994 ORTHO05D007322 3.0e-11 72.8 51 68.6
CDE01G0018 Ceratophyllum demersum HOM05D005994 ORTHO05D007322 3.9e-11 72.4 55 63.6
Ciclev10016738m.g Citrus clementina HOM05D005994 ORTHO05D007322 3.9e-11 72.4 59 59.3
Eucgr.D00619 Eucalyptus grandis HOM05D005994 ORTHO05D007322 3.9e-11 72.4 55 63.6
Prupe.4G007400 Prunus persica HOM05D005994 ORTHO05D007322 3.9e-11 72.4 55 63.6
Thecc.06G236600 Theobroma cacao HOM05D005994 ORTHO05D007322 3.9e-11 72.4 55 61.8
Haze_06972 Corylus avellana HOM05D005994 ORTHO05D007322 6.7e-11 71.6 55 63.6
Duzib192G0253 Durio zibethinus HOM05D005994 ORTHO05D007322 6.7e-11 71.6 55 63.6
Sabra06G0011700 Salix brachista HOM05D005994 ORTHO05D007322 6.7e-11 71.6 55 61.8
Sabra16G0013400 Salix brachista HOM05D005994 ORTHO05D007322 6.7e-11 71.6 55 61.8
AUR62017059 Chenopodium quinoa HOM05D005994 ORTHO05D007322 8.7e-11 71.2 55 65.5
AUR62040659 Chenopodium quinoa HOM05D005994 ORTHO05D007322 8.7e-11 71.2 55 65.5
Potri.006G016300 Populus trichocarpa HOM05D005994 ORTHO05D007322 8.7e-11 71.2 55 61.8
Hund23128 Selenicereus undatus HOM05D005994 ORTHO05D007322 8.7e-11 71.2 55 63.6
HPP92_013264 Vanilla planifolia HOM05D005994 ORTHO05D007322 8.7e-11 71.2 55 61.8
Cfa000074 Carpinus fangiana HOM05D005994 ORTHO05D007322 1.5e-10 70.5 55 63.6
MBI04_g07210_MAGBIO Magnolia biondii HOM05D005994 ORTHO05D007322 1.5e-10 70.5 55 61.8
GSVIVG01037779001 Vitis vinifera HOM05D005994 ORTHO05D007322 1.5e-10 70.5 55 61.8
Nn5g27130 Nelumbo nucifera HOM05D005994 ORTHO05D007322 2.5e-10 69.7 51 66.7
MBI04_g36325_MAGBIO Magnolia biondii HOM05D005994 ORTHO05D007322 3.3e-10 69.3 51 64.7
Ca_00743_v3 Cicer arietinum L. HOM05D005994 ORTHO05D007322 7.4e-10 68.2 55 61.8
QL05p068624 Quercus lobata HOM05D005994 ORTHO05D007322 2.8e-09 66.2 55 58.2
QL05p068978 Quercus lobata HOM05D005994 ORTHO05D007322 2.8e-09 66.2 55 58.2
THA.LOC104815483 Tarenaya hassleriana HOM05D005994 ORTHO05D007322 8.2e-09 64.7 56 60.7
Medtr2g097750 Medicago truncatula HOM05D005994 ORTHO05D007322 3.1e-08 62.8 55 56.4
Nitab4.5_0000607g0040 Nicotiana tabacum HOM05D006135 ORTHO05D007533 3.1e-08 62.8 51 60.8
Peaxi162Scf00285g00824 Petunia axillaris HOM05D005994 ORTHO05D007322 5.3e-08 62.0 43 67.4
Potri.016G009600 Populus trichocarpa HOM05D005994 ORTHO05D007322 1.5e-07 60.5 55 54.5
SEGI_25373 Sequoiadendron giganteum HOM05D005994 ORTHO05D007322 3.4e-07 59.3 42 66.7
Dinv10313 Davidia involucrata HOM05D005994 ORTHO05D007322 5.9e-07 58.5 51 58.8


User provided reference genes

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