Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 8.2e-126 453.8 231 100.0
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 7.2e-106 387.5 231 82.3
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 5.4e-85 318.2 226 66.4
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 3.5e-84 315.5 227 67.8
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 3.5e-84 315.5 227 66.5
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 7.7e-84 314.3 226 66.8
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 1.0e-83 313.9 229 65.1
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 1.7e-83 313.2 229 66.4
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 2.9e-83 312.4 229 65.9
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 3.8e-83 312.0 227 65.6
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 5.0e-83 311.6 227 66.5
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 5.0e-83 311.6 227 66.1
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 8.6e-83 310.8 227 65.6
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 8.6e-83 310.8 216 69.4
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 2.5e-82 309.3 229 65.5
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 3.3e-82 308.9 227 63.4
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 3.3e-82 308.9 227 65.2
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 4.2e-82 308.5 229 64.2
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 4.2e-82 308.5 229 64.6
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 7.2e-82 307.8 227 64.3
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 9.5e-82 307.4 227 64.3
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 1.2e-81 307.0 222 66.7
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 1.6e-81 306.6 229 65.1
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 2.1e-81 306.2 223 67.7
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 2.1e-81 306.2 229 65.1
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 2.8e-81 305.8 227 64.3
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 2.8e-81 305.8 227 64.8
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 2.8e-81 305.8 228 62.3
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 4.7e-81 305.1 228 63.2
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 6.1e-81 304.7 228 62.7
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 8.0e-81 304.3 228 62.3
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 8.0e-81 304.3 228 62.3
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 1.0e-80 303.9 229 63.3
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 1.0e-80 303.9 227 63.0
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 1.4e-80 303.5 229 61.6
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 1.4e-80 303.5 229 64.2
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 1.8e-80 303.1 227 63.9
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 1.8e-80 303.1 229 65.1
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 1.8e-80 303.1 229 62.4
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 1.8e-80 303.1 229 62.4
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 1.8e-80 303.1 224 63.8
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.8e-80 303.1 223 65.5
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 2.3e-80 302.8 223 66.8
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 2.3e-80 302.8 227 63.4
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 3.0e-80 302.4 227 63.0
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 4.0e-80 302.0 229 63.8
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 4.0e-80 302.0 225 64.9
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 6.8e-80 301.2 216 66.7
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 8.9e-80 300.8 227 63.4
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 8.9e-80 300.8 227 62.6
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 8.9e-80 300.8 227 64.3
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.2e-79 300.4 227 63.9
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 1.2e-79 300.4 227 64.3
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 1.5e-79 300.1 229 62.9
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 1.5e-79 300.1 228 61.4
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 1.5e-79 300.1 227 63.9
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 1.5e-79 300.1 228 61.4
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 1.5e-79 300.1 227 63.0
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 2.0e-79 299.7 226 63.7
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 2.0e-79 299.7 227 63.4
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 2.6e-79 299.3 229 62.9
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 3.4e-79 298.9 229 62.4
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 3.4e-79 298.9 226 62.8
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 5.7e-79 298.1 231 63.6
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 5.7e-79 298.1 227 63.0
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 7.5e-79 297.7 229 62.4
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 9.8e-79 297.4 229 62.4
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 1.3e-78 297.0 229 63.3
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 1.3e-78 297.0 227 63.0
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 1.3e-78 297.0 229 62.0
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 1.3e-78 297.0 229 62.9
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 2.8e-78 295.8 227 63.0
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 2.8e-78 295.8 226 62.4
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 3.7e-78 295.4 229 63.8
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 3.7e-78 295.4 229 62.9
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 3.7e-78 295.4 227 62.6
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 4.9e-78 295.0 223 61.0
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 8.3e-78 294.3 229 60.7
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 1.1e-77 293.9 212 65.6
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 1.1e-77 293.9 227 62.1
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 1.4e-77 293.5 227 61.7
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 1.8e-77 293.1 227 61.7
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 2.4e-77 292.7 230 63.0
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 3.1e-77 292.4 227 61.7
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.1e-77 292.4 227 63.0
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 3.1e-77 292.4 227 61.7
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 4.1e-77 292.0 224 62.9
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 4.1e-77 292.0 227 61.7
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 7.0e-77 291.2 227 63.0
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 7.0e-77 291.2 227 62.6
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 7.0e-77 291.2 228 62.7
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 7.8e-76 287.7 227 62.1
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 7.8e-76 287.7 228 62.7
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.0e-75 287.3 227 60.8
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 1.7e-75 286.6 227 60.4
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 2.3e-75 286.2 212 64.6
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 3.8e-75 285.4 263 56.3
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 5.0e-75 285.0 227 61.7
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 6.6e-75 284.6 227 60.4
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 6.6e-75 284.6 227 61.7
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 8.6e-75 284.3 227 60.8
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 8.6e-75 284.3 201 66.7
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 1.1e-74 283.9 227 61.2
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 1.5e-74 283.5 227 60.4
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 1.9e-74 283.1 227 59.9
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 1.9e-74 283.1 229 60.7
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 2.5e-74 282.7 227 59.5
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 3.3e-74 282.3 226 59.7
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 3.3e-74 282.3 226 59.7
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 3.3e-74 282.3 227 59.5
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 3.3e-74 282.3 224 58.5
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 4.3e-74 282.0 224 61.2
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 5.6e-74 281.6 227 60.4
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 9.5e-74 280.8 309 48.5
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 2.1e-73 279.6 227 59.0
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 3.6e-73 278.9 201 66.2
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 2.3e-72 276.2 227 58.6
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 2.6e-71 272.7 226 58.4
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 3.4e-71 272.3 203 66.5
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 4.1e-69 265.4 229 57.6
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 5.4e-69 265.0 227 58.1
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 2.0e-68 263.1 195 63.6
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 1.9e-66 256.5 210 57.6
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 1.4e-64 250.4 146 83.6
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 1.2e-63 247.3 190 62.1
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 1.5e-63 246.9 217 56.7
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 3.4e-63 245.7 229 54.6
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 3.7e-62 242.3 202 58.9
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 3.2e-61 239.2 197 56.3
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 7.0e-61 238.0 221 52.9
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 1.2e-60 237.3 212 56.1
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 1.9e-58 229.9 223 51.6
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 9.5e-58 227.6 237 51.9
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 3.1e-56 222.6 182 60.4
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 1.3e-54 217.2 213 53.1
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 9.2e-53 211.1 147 66.7
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 1.6e-52 210.3 178 58.4
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 4.3e-50 202.2 144 66.7
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 4.3e-50 202.2 133 71.4
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 8.4e-46 188.0 124 71.8
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 5.4e-45 185.3 144 61.1
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 1.1e-40 171.0 172 50.6
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 4.0e-40 169.1 191 49.2
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 1.3e-38 164.1 131 61.1
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 3.8e-38 162.5 191 44.0
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 8.4e-38 161.4 142 54.9
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 5.4e-37 158.7 133 57.1
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 1.6e-36 157.1 146 52.7
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 2.1e-36 156.8 185 42.7
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 6.0e-36 155.2 140 51.4
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 1.5e-34 150.6 118 59.3
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 6.4e-30 135.2 125 54.4
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 1.4e-29 134.0 85 72.9
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 1.6e-28 130.6 83 71.1
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 2.3e-27 126.7 85 68.2
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 8.7e-27 124.8 108 59.3
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 8.7e-27 124.8 85 68.2
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 1.9e-26 123.6 88 64.8
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 5.6e-26 122.1 149 44.3
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 7.4e-26 121.7 140 45.7
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 7.4e-26 121.7 98 63.3
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 2.1e-25 120.2 82 70.7
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 2.4e-24 116.7 85 65.9
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 9.9e-23 111.3 95 60.0
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 2.5e-21 106.7 77 66.2
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 2.5e-21 106.7 85 62.4
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 4.6e-20 102.4 85 57.6
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 1.3e-19 100.9 67 70.1
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 1.8e-19 100.5 108 46.3
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 1.6e-17 94.0 69 59.4
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 2.1e-17 93.6 182 29.7
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 2.1e-17 93.6 118 44.1
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 4.8e-17 92.4 108 45.4
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 3.8e-14 82.8 51 72.5
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 4.9e-14 82.4 61 60.7
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 3.2e-13 79.7 82 46.3
Cre13.g586250 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 1.6e-12 77.4 185 28.1
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 3.0e-11 73.2 67 56.7
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 5.1e-11 72.4 58 62.1
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 5.7e-10 68.9 190 26.8
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 1.6e-09 67.4 82 45.1
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 6.3e-09 65.5 54 55.6
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 5.3e-08 62.4 49 59.2


User provided reference genes

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