Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 0.0e+00 1154.4 554 100.0
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 4.7e-236 821.2 746 57.9
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 1.4e-235 819.7 751 57.7
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 1.3e-233 813.1 753 57.0
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.9e-197 693.0 672 53.0
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 8.1e-196 687.6 761 48.8
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 2.0e-194 682.9 765 48.0
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 3.2e-192 675.6 744 49.1
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 5.4e-192 674.9 735 48.4
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 7.1e-192 674.5 734 49.2
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 1.2e-191 673.7 735 48.4
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 6.0e-191 671.4 749 47.7
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 6.0e-191 671.4 764 47.4
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 2.3e-190 669.5 735 48.4
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 2.3e-190 669.5 735 48.3
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.3e-190 669.5 770 47.0
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 5.1e-190 668.3 778 46.3
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 6.6e-190 667.9 737 48.3
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 5.6e-189 664.8 735 47.9
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 1.6e-188 663.3 739 48.2
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 2.8e-188 662.5 770 47.5
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 2.8e-188 662.5 743 47.1
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 3.6e-188 662.1 734 47.8
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 6.2e-188 661.4 740 48.2
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 6.8e-187 657.9 768 47.3
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 8.9e-187 657.5 735 47.5
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 3.4e-186 655.6 773 46.3
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 4.4e-186 655.2 737 47.2
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 9.9e-186 654.1 739 47.9
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 4.9e-185 651.7 741 47.9
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 4.9e-185 651.7 737 46.8
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 1.4e-184 650.2 772 46.4
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 1.4e-184 650.2 762 46.3
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 1.9e-184 649.8 741 47.6
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 2.4e-184 649.4 772 46.4
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 4.6e-183 645.2 735 46.5
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 4.6e-183 645.2 735 46.7
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 4.6e-183 645.2 764 46.2
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 6.0e-183 644.8 763 46.0
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 6.0e-183 644.8 742 46.8
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 1.3e-182 643.7 768 45.6
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 2.3e-182 642.9 749 46.5
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 2.3e-182 642.9 769 46.3
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 3.9e-182 642.1 735 46.7
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 8.7e-182 641.0 762 46.5
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 1.2e-180 637.1 740 45.9
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 1.6e-180 636.7 802 45.4
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 2.8e-180 636.0 778 45.6
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 3.6e-180 635.6 764 45.7
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 1.1e-179 634.0 764 45.8
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 1.4e-179 633.6 735 46.3
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 1.4e-179 633.6 765 45.9
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 3.1e-179 632.5 733 46.1
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 3.1e-179 632.5 764 45.9
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 4.0e-179 632.1 758 45.8
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 1.2e-178 630.6 759 45.5
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 1.5e-178 630.2 709 48.8
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 2.6e-178 629.4 760 45.9
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 3.4e-178 629.0 734 46.3
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 3.4e-178 629.0 762 45.0
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 1.7e-177 626.7 736 46.2
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 2.2e-177 626.3 758 45.4
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 2.2e-177 626.3 758 45.4
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 2.9e-177 625.9 765 45.1
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 2.9e-177 625.9 758 45.5
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 4.9e-177 625.2 762 45.8
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 4.9e-177 625.2 758 45.5
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 8.4e-177 624.4 735 46.0
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 8.4e-177 624.4 762 45.3
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 8.4e-177 624.4 735 46.3
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 1.1e-176 624.0 763 45.2
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 1.4e-176 623.6 736 46.3
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.9e-176 623.2 758 45.3
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 5.4e-176 621.7 782 44.0
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 5.4e-176 621.7 762 44.6
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.6e-175 620.2 758 45.0
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 1.6e-175 620.2 734 45.6
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 7.8e-175 617.8 743 45.8
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 3.9e-174 615.5 738 45.4
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 3.9e-174 615.5 735 45.9
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 8.7e-174 614.4 734 45.8
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 8.7e-174 614.4 766 44.5
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 1.5e-173 613.6 728 45.2
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 1.9e-173 613.2 735 45.7
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 1.9e-173 613.2 735 45.4
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 3.3e-173 612.5 731 44.7
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 4.3e-173 612.1 763 45.2
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 4.3e-173 612.1 734 45.5
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 7.3e-173 611.3 738 45.1
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 1.3e-172 610.5 767 45.0
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 1.6e-172 610.1 719 46.9
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 2.8e-172 609.4 768 44.0
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 3.6e-172 609.0 759 44.7
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 4.8e-172 608.6 730 45.2
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 6.2e-172 608.2 732 44.9
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 1.1e-171 607.4 747 44.8
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 1.8e-171 606.7 762 44.5
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 4.0e-171 605.5 560 55.9
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 6.9e-171 604.7 766 44.0
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.3e-169 600.5 803 42.2
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 2.2e-169 599.7 760 43.9
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 2.2e-169 599.7 765 43.8
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 2.9e-169 599.4 758 44.3
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 3.8e-169 599.0 735 44.8
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 8.4e-169 597.8 763 43.9
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 8.4e-169 597.8 759 44.0
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 1.1e-168 597.4 732 44.7
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 1.1e-168 597.4 766 43.6
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 1.1e-168 597.4 763 44.6
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 3.2e-168 595.9 766 44.0
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 7.1e-168 594.7 762 43.7
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 1.6e-167 593.6 757 44.4
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 1.3e-166 590.5 761 43.5
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 1.3e-166 590.5 765 43.1
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 1.1e-165 587.4 765 43.3
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 9.6e-165 584.3 763 43.8
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 1.4e-163 580.5 767 42.6
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 3.1e-163 579.3 770 42.9
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 1.2e-162 577.4 728 44.5
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 8.4e-161 571.2 711 44.4
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 2.5e-160 569.7 711 44.4
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 1.6e-159 567.0 752 43.6
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 8.7e-158 561.2 767 41.6
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 2.5e-157 559.7 822 40.5
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 1.6e-156 557.0 768 41.9
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 8.2e-156 554.7 763 42.2
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 1.2e-154 550.8 754 41.5
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 2.6e-154 549.7 701 44.9
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 2.2e-148 530.0 831 39.0
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 1.1e-147 527.7 742 41.9
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 4.1e-147 525.8 733 40.5
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 4.1e-147 525.8 716 41.8
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 2.1e-143 513.5 755 40.4
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 1.1e-141 507.7 758 40.1
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 2.0e-141 506.9 721 42.6
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 1.2e-138 497.7 754 39.8
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.2e-135 487.6 419 59.7
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 5.0e-129 465.7 751 39.1
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 1.6e-122 444.1 654 40.7
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 7.2e-120 435.3 680 39.6
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 1.8e-118 430.6 762 34.9
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 6.8e-118 428.7 756 35.4
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 2.6e-117 426.8 387 56.1
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 4.5e-114 416.0 277 74.0
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 6.5e-113 412.1 731 35.3
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.0e-110 404.8 734 34.9
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 3.4e-109 399.8 782 33.0
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 1.6e-98 364.4 778 30.6
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 8.9e-86 322.0 193 72.0
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 4.9e-84 316.2 193 72.0
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 4.9e-84 316.2 193 72.0
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 2.1e-82 310.8 193 70.5
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 4.6e-82 309.7 388 47.9
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 1.0e-81 308.5 244 61.1
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 1.5e-80 304.7 194 70.1
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 2.5e-80 303.9 566 33.2
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 3.9e-57 226.9 744 24.7
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 2.8e-47 194.1 289 40.1
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 2.4e-46 191.0 193 51.8
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 3.8e-44 183.7 142 62.7
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.9e-43 181.4 143 60.8
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.5e-43 181.0 175 53.7
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 1.3e-41 175.3 167 49.7
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 3.2e-35 154.1 151 57.0
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 5.1e-33 146.7 74 79.7
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.9e-19 101.7 55 67.3
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 2.2e-12 78.2 103 39.8
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 1.4e-09 68.9 46 65.2
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 2.3e-09 68.2 53 56.6
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 8.8e-09 66.2 39 69.2


User provided reference genes

Program Settings