Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 1.7e-70 269.2 136 100.0
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 6.2e-65 250.8 133 94.0
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 3.0e-51 205.3 119 84.0
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.5e-47 193.0 119 78.2
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.5e-47 193.0 120 80.8
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 5.8e-47 191.0 119 76.5
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 7.6e-47 190.7 120 76.7
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 1.7e-46 189.5 120 74.2
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 2.9e-46 188.7 123 71.5
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 2.9e-46 188.7 118 73.7
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 1.4e-45 186.4 119 73.1
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 2.4e-45 185.7 122 74.6
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 3.2e-45 185.3 120 74.2
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 5.4e-45 184.5 122 72.1
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 5.4e-45 184.5 119 71.4
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 7.1e-45 184.1 119 73.1
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 7.1e-45 184.1 122 69.7
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 9.3e-45 183.7 117 73.5
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 9.3e-45 183.7 120 74.2
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 9.3e-45 183.7 119 74.8
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 9.3e-45 183.7 122 69.7
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 1.2e-44 183.3 119 73.9
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 1.6e-44 183.0 119 72.3
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 2.1e-44 182.6 119 73.1
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 2.7e-44 182.2 119 72.3
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 3.5e-44 181.8 119 72.3
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 4.6e-44 181.4 119 75.6
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 6.0e-44 181.0 122 69.7
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 7.9e-44 180.6 122 74.6
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 7.9e-44 180.6 119 73.1
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 1.0e-43 180.3 119 73.1
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 1.0e-43 180.3 119 73.9
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 1.3e-43 179.9 119 71.4
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 1.3e-43 179.9 120 72.5
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.3e-43 179.9 120 72.5
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.3e-43 179.9 120 72.5
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.3e-43 179.9 120 72.5
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 1.3e-43 179.9 120 72.5
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 1.3e-43 179.9 120 72.5
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 1.8e-43 179.5 125 71.2
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 1.8e-43 179.5 120 70.0
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 2.3e-43 179.1 119 71.4
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 2.3e-43 179.1 119 74.8
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 3.0e-43 178.7 120 73.3
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 3.0e-43 178.7 121 68.6
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 3.0e-43 178.7 119 74.8
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 3.9e-43 178.3 119 72.3
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 3.9e-43 178.3 122 70.5
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 5.1e-43 177.9 119 69.7
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 5.1e-43 177.9 119 72.3
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 5.1e-43 177.9 120 72.5
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 5.1e-43 177.9 121 71.9
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 6.7e-43 177.6 120 70.8
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 8.7e-43 177.2 122 68.0
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 8.7e-43 177.2 119 69.7
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.1e-42 176.8 120 71.7
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 1.1e-42 176.8 119 72.3
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 1.5e-42 176.4 120 70.8
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 2.5e-42 175.6 119 73.9
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 2.5e-42 175.6 130 66.2
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 3.3e-42 175.3 120 70.8
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 4.3e-42 174.9 120 69.2
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 4.3e-42 174.9 119 71.4
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 4.3e-42 174.9 119 71.4
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 5.6e-42 174.5 119 70.6
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 5.6e-42 174.5 120 67.5
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 5.6e-42 174.5 119 73.9
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 7.4e-42 174.1 122 66.4
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 7.4e-42 174.1 119 71.4
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 9.6e-42 173.7 119 71.4
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 9.6e-42 173.7 125 68.8
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 1.3e-41 173.3 119 70.6
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 1.6e-41 172.9 125 68.8
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 2.8e-41 172.2 125 68.8
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 3.7e-41 171.8 119 69.7
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 4.8e-41 171.4 119 71.4
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 6.2e-41 171.0 119 70.6
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 6.2e-41 171.0 119 71.4
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 6.2e-41 171.0 134 62.7
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 8.1e-41 170.6 119 70.6
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 8.1e-41 170.6 119 71.4
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 8.1e-41 170.6 119 70.6
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 8.1e-41 170.6 119 68.1
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 1.4e-40 169.9 119 70.6
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 5.3e-40 167.9 119 69.7
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 6.9e-40 167.5 120 67.5
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 6.9e-40 167.5 119 68.9
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 9.0e-40 167.2 119 68.1
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.2e-39 166.8 120 65.8
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 1.2e-39 166.8 120 68.3
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 1.5e-39 166.4 122 68.0
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 1.5e-39 166.4 121 66.1
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 2.0e-39 166.0 119 68.9
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 2.6e-39 165.6 121 64.5
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 3.4e-39 165.2 132 62.9
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 3.4e-39 165.2 117 66.7
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 5.8e-39 164.5 119 68.9
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 7.6e-39 164.1 122 66.4
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 9.9e-39 163.7 120 67.5
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 9.9e-39 163.7 121 66.1
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 1.3e-38 163.3 122 62.3
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 1.7e-38 162.9 121 64.5
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 1.7e-38 162.9 119 68.1
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 2.9e-38 162.2 132 61.4
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 2.9e-38 162.2 132 61.4
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 2.9e-38 162.2 132 61.4
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 2.9e-38 162.2 120 66.7
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 2.9e-38 162.2 120 65.8
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 3.8e-38 161.8 127 63.8
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 6.4e-38 161.0 120 64.2
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 8.4e-38 160.6 121 62.8
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 8.4e-38 160.6 120 64.2
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 8.4e-38 160.6 120 65.0
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 1.9e-37 159.5 119 65.5
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 2.4e-37 159.1 120 62.5
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 2.4e-37 159.1 121 65.3
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 5.5e-37 157.9 121 63.6
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 5.5e-37 157.9 122 63.1
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 5.5e-37 157.9 122 63.1
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 7.1e-37 157.5 124 62.1
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 7.1e-37 157.5 132 59.8
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 2.1e-36 156.0 122 63.1
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 2.7e-36 155.6 122 63.9
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 2.7e-36 155.6 122 63.9
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 2.7e-36 155.6 120 64.2
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 3.5e-36 155.2 104 69.2
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 1.0e-35 153.7 122 62.3
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 1.3e-35 153.3 112 67.9
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.8e-35 152.9 124 63.7
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 1.8e-35 152.9 109 68.8
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 2.3e-35 152.5 97 71.1
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 2.3e-35 152.5 97 71.1
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 3.9e-35 151.8 124 63.7
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 4.3e-34 148.3 124 61.3
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 4.3e-34 148.3 118 61.9
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 5.6e-34 147.9 124 61.3
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 7.4e-34 147.5 122 58.2
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 9.6e-34 147.1 120 62.5
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 9.6e-34 147.1 104 69.2
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 1.3e-33 146.7 122 57.4
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 1.6e-33 146.4 119 62.2
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 1.6e-33 146.4 118 61.0
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 2.1e-33 146.0 122 57.4
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 2.8e-33 145.6 121 57.9
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 2.8e-33 145.6 108 63.9
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 8.2e-33 144.1 126 62.7
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 8.2e-33 144.1 112 66.1
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 1.4e-32 143.3 116 57.8
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 2.4e-32 142.5 119 59.7
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 6.9e-32 141.0 133 55.6
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 7.6e-31 137.5 131 57.3
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 4.9e-30 134.8 120 55.8
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 8.4e-30 134.0 118 55.9
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 1.4e-29 133.3 119 57.1
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 7.1e-29 131.0 118 54.2
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 1.8e-27 126.3 99 63.6
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 1.8e-27 126.3 63 93.7
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 2.3e-27 125.9 119 53.8
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 1.4e-24 116.7 101 60.4
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.5e-18 96.7 57 73.7
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 5.7e-18 94.7 112 46.4
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 9.7e-18 94.0 67 67.2
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 4.8e-17 91.7 57 70.2
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 2.0e-15 86.3 65 61.5
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 2.0e-15 86.3 65 61.5
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 7.7e-15 84.3 81 58.0
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 2.2e-14 82.8 64 57.8
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 4.2e-13 78.6 61 65.6
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 5.5e-13 78.2 53 67.9
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 7.2e-13 77.8 64 62.5
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.6e-12 76.6 71 57.7
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 3.6e-12 75.5 53 66.0
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 4.7e-12 75.1 61 62.3
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 1.4e-11 73.6 60 61.7
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 3.0e-11 72.4 118 35.6
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 3.9e-11 72.0 52 71.2
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 2.0e-07 59.7 62 46.8


User provided reference genes

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