Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 8.3e-249 863.2 429 100.0
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 5.1e-190 667.9 454 75.1
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 1.3e-137 493.8 457 57.5
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 2.8e-135 486.1 459 56.2
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 2.8e-135 486.1 460 55.4
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 3.6e-135 485.7 460 55.0
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 4.7e-135 485.3 460 56.5
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 8.0e-135 484.6 460 55.4
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 1.4e-134 483.8 460 54.3
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 3.1e-134 482.6 460 56.5
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 3.1e-134 482.6 460 55.4
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 4.0e-134 482.3 461 56.8
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 8.9e-134 481.1 462 55.8
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 1.5e-133 480.3 460 55.4
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 4.4e-133 478.8 460 55.0
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 9.8e-133 477.6 460 55.2
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 3.7e-132 475.7 458 55.2
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 3.7e-132 475.7 458 55.2
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 3.7e-132 475.7 458 55.2
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 6.4e-132 474.9 460 55.0
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 6.4e-132 474.9 459 55.6
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 8.3e-132 474.6 460 55.7
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 1.1e-131 474.2 460 55.7
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 1.1e-131 474.2 460 55.7
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 1.9e-131 473.4 460 55.0
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 1.9e-131 473.4 461 54.4
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 4.1e-131 472.2 460 56.5
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 4.1e-131 472.2 460 55.0
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 7.0e-131 471.5 460 54.6
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 7.0e-131 471.5 460 55.0
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 1.6e-130 470.3 460 55.7
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 2.7e-130 469.5 460 55.7
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 2.7e-130 469.5 460 55.2
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 3.5e-130 469.2 460 55.4
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 4.6e-130 468.8 460 55.4
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 4.6e-130 468.8 462 55.8
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 4.6e-130 468.8 459 56.2
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 4.6e-130 468.8 460 54.3
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 1.0e-129 467.6 460 55.0
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 1.3e-129 467.2 460 55.2
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 1.7e-129 466.8 459 55.1
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 1.7e-129 466.8 462 55.4
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 1.7e-129 466.8 462 54.3
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 2.3e-129 466.5 461 54.0
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 3.0e-129 466.1 459 55.8
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 3.0e-129 466.1 460 55.4
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 3.9e-129 465.7 462 55.2
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 3.9e-129 465.7 460 55.0
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 3.9e-129 465.7 459 56.0
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 5.0e-129 465.3 460 54.8
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 6.6e-129 464.9 460 55.0
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 1.1e-128 464.2 460 54.8
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 2.5e-128 463.0 459 54.9
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 4.3e-128 462.2 460 53.9
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 4.3e-128 462.2 457 55.4
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 9.5e-128 461.1 460 52.6
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 1.2e-127 460.7 460 54.6
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 2.1e-127 459.9 461 54.0
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 2.1e-127 459.9 460 52.6
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 2.8e-127 459.5 460 52.6
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 1.1e-126 457.6 460 53.3
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 1.1e-126 457.6 460 52.8
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 1.1e-126 457.6 460 53.3
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 1.4e-126 457.2 462 53.0
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 1.4e-126 457.2 460 53.5
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 1.8e-126 456.8 460 53.5
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 2.3e-126 456.4 459 53.8
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 3.1e-126 456.1 460 52.2
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 3.1e-126 456.1 461 53.8
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 4.0e-126 455.7 460 52.6
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 5.2e-126 455.3 460 52.4
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 5.2e-126 455.3 457 55.4
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 5.2e-126 455.3 461 54.0
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 6.8e-126 454.9 460 52.4
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 6.8e-126 454.9 457 54.3
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 6.8e-126 454.9 462 54.3
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 1.2e-125 454.1 460 52.4
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 2.0e-125 453.4 438 55.7
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 3.4e-125 452.6 475 53.5
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 5.8e-125 451.8 460 53.7
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 5.8e-125 451.8 469 53.3
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 2.9e-124 449.5 460 52.6
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 3.7e-124 449.1 477 52.6
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 4.9e-124 448.7 461 52.7
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 4.9e-124 448.7 487 52.6
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 8.3e-124 448.0 460 51.5
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 1.4e-123 447.2 460 52.4
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 1.4e-123 447.2 461 52.9
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 1.4e-123 447.2 491 51.1
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 7.0e-123 444.9 459 52.5
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 2.1e-122 443.4 429 55.0
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 1.1e-120 437.6 553 46.3
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 2.5e-120 436.4 493 50.5
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 2.5e-120 436.4 510 49.0
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 1.6e-119 433.7 436 53.9
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 1.1e-118 431.0 465 51.4
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 4.4e-117 425.6 460 51.3
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 2.9e-116 422.9 469 51.8
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 4.9e-116 422.2 524 47.1
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 4.1e-115 419.1 467 49.9
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 6.0e-114 415.2 459 52.1
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 1.7e-113 413.7 394 57.4
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 1.6e-111 407.1 441 51.2
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 8.9e-110 401.4 391 54.5
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 8.9e-110 401.4 386 56.5
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 1.2e-109 401.0 449 48.8
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 2.4e-107 393.3 548 43.6
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 2.5e-104 383.3 351 58.1
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 6.9e-102 375.2 342 57.6
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 4.2e-99 365.9 356 54.8
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 9.3e-99 364.8 341 56.6
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 1.3e-97 360.9 452 47.3
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 1.1e-96 357.8 484 44.8
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 1.3e-95 354.4 263 66.2
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 2.8e-95 353.2 458 45.9
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 3.6e-95 352.8 424 48.3
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 4.8e-95 352.4 424 48.3
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 2.0e-93 347.1 262 64.5
Ciclev10031728m.g Citrus clementina HOM05D004192 ORTHO05D004917 3.4e-93 346.3 367 50.7
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 4.5e-93 345.9 296 59.1
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 1.1e-91 341.3 472 42.2
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 5.4e-91 339.0 416 46.9
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 2.1e-90 337.0 421 47.5
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 5.1e-89 332.4 263 62.7
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 9.6e-88 328.2 572 37.9
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 6.7e-81 305.4 422 42.7
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 3.3e-80 303.1 367 46.9
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 4.3e-80 302.8 355 51.0
MBI17_g20211_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 5.8e-77 292.4 357 47.6
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 3.9e-73 279.6 423 41.1
Cpa.g.sc942.1 Carica papaya HOM05D004192 ORTHO05D004917 4.6e-66 256.1 295 47.5
Medtr1g092570 Medicago truncatula HOM05D004192 ORTHO05D004917 1.8e-65 254.2 301 47.8
arahy.Tifrunner.gnm1.ann1.VIL3TT Arachis hypogaea HOM05D004192 ORTHO05D004917 2.3e-65 253.8 291 48.5
SHI21312 Sapria himalayana HOM05D004192 ORTHO05D004917 6.7e-57 225.7 257 48.6
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 1.4e-54 218.0 165 66.7
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 1.1e-48 198.4 162 63.6
Nitab4.5_0003408g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 1.6e-45 188.0 355 36.9
Hma1.2p1_0492F.1_g164740 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 5.0e-44 183.0 195 50.8
Psat0s3097g0040 Pisum sativum HOM05D004192 ORTHO05D004917 3.2e-35 153.7 124 62.1
Psat0s4326g0040 Pisum sativum HOM05D004192 ORTHO05D004917 1.8e-30 137.9 169 43.8
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 5.9e-29 132.9 287 33.4
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 2.9e-28 130.6 97 66.0
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 1.9e-27 127.9 85 70.6
PGSC0003DMG401027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 2.5e-27 127.5 138 49.3
SHI21313 Sapria himalayana HOM05D004192 ORTHO05D004917 2.7e-21 107.5 126 49.2
QL04p040713 Quercus lobata HOM05D004192 ORTHO05D004917 3.1e-17 94.0 96 49.0
TAR371G0071 Trochodendron aralioides HOM05D004192 ORTHO05D004917 1.5e-16 91.7 134 41.0
RcHm_v2.0_Chr4g0433221 Rosa chinensis HOM05D004192 ORTHO05D004917 4.3e-11 73.6 65 58.5
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 2.1e-10 71.2 34 91.2
Nitab4.5_0003408g0010 Nicotiana tabacum HOM05D004192 ORTHO05D004917 4.7e-10 70.1 69 53.6
RcHm_v2.0_Chr0c16g0499861 Rosa chinensis HOM05D004192 ORTHO05D004917 1.8e-09 68.2 56 58.9
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 4.4e-08 63.5 71 46.5
Cpa.g.c33984 Carica papaya HOM05D004192 ORTHO05D004917 9.8e-08 62.4 33 81.8


User provided reference genes

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