Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb039300 Zea mays HOM05D000509 ORTHO05D006393 4.6e-68 261.2 137 100.0
Os08g0559700 Oryza sativa ssp. japonica HOM05D000509 ORTHO05D006393 3.9e-35 151.8 111 74.8
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 4.7e-20 101.7 124 46.8
Aqoxy2G02281 Aquilegia oxysepala HOM05D000509 ORTHO05D006393 6.8e-19 97.8 129 47.3
CAN.G78.80 Capsicum annuum HOM05D000509 ORTHO05D006393 7.5e-18 94.4 132 43.9
Glyma.18G233000 Glycine max HOM05D000509 ORTHO05D006393 7.5e-18 94.4 131 46.6
MBI17_g24690_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 1.3e-17 93.6 134 44.0
Ca_07920_v3 Cicer arietinum L. HOM05D000509 ORTHO05D006393 2.2e-17 92.8 126 46.8
arahy.Tifrunner.gnm1.ann1.NYL5F5 Arachis hypogaea HOM05D000509 ORTHO05D006393 4.8e-17 91.7 140 47.1
Medtr8g095630 Medicago truncatula HOM05D000509 ORTHO05D006393 4.8e-17 91.7 129 48.1
Dinv41795 Davidia involucrata HOM05D000509 ORTHO05D006393 6.3e-17 91.3 130 44.6
Gohir.A02G020500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 1.4e-16 90.1 141 43.3
Gohir.A08G013720 Gossypium hirsutum HOM05D000509 ORTHO05D006393 1.4e-16 90.1 141 43.3
arahy.Tifrunner.gnm1.ann1.E8SAKG Arachis hypogaea HOM05D000509 ORTHO05D006393 3.1e-16 89.0 140 46.4
Thecc.04G199400 Theobroma cacao HOM05D000509 ORTHO05D006393 3.1e-16 89.0 127 46.5
Gorai.005G030400 Gossypium raimondii HOM05D000509 ORTHO05D006393 4.1e-16 88.6 141 43.3
Potri.016G069200 Populus trichocarpa HOM05D000509 ORTHO05D006393 5.3e-16 88.2 134 47.8
EL10Ac8g20190 Beta vulgaris HOM05D000509 ORTHO05D006393 7.0e-16 87.8 140 45.0
Gohir.D02G024500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 7.0e-16 87.8 141 42.6
Cpa.g.sc11.3 Carica papaya HOM05D000509 ORTHO05D006393 9.1e-16 87.4 134 43.3
Lj1g0015308 Lotus japonicus HOM05D000509 ORTHO05D006393 9.1e-16 87.4 132 46.2
Nitab4.5_0000583g0080 Nicotiana tabacum HOM05D000509 ORTHO05D006393 1.2e-15 87.0 128 41.4
TWI14G0500 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 1.2e-15 87.0 133 42.9
Phvul.008G062400 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 1.6e-15 86.7 134 43.3
FvH4_7g14280 Fragaria vesca HOM05D000509 ORTHO05D006393 2.0e-15 86.3 127 44.9
EL10Ac4g09051 Beta vulgaris HOM05D000509 ORTHO05D006393 2.7e-15 85.9 137 47.4
VMungo1383G0114 Vigna mungo HOM05D000509 ORTHO05D006393 3.5e-15 85.5 127 43.3
Sabra02G0116600 Salix brachista HOM05D000509 ORTHO05D006393 5.9e-15 84.7 135 46.7
Actinidia12704 Actinidia chinensis HOM05D000509 ORTHO05D006393 7.7e-15 84.3 134 44.8
Eucgr.B00993 Eucalyptus grandis HOM05D000509 ORTHO05D006393 7.7e-15 84.3 130 40.0
VMungo0540G0837 Vigna mungo HOM05D000509 ORTHO05D006393 1.3e-14 83.6 127 41.7
Duzib151G0093 Durio zibethinus HOM05D000509 ORTHO05D006393 2.9e-14 82.4 135 45.2
SGA_v2.0_scaffold95G28834 Striga asiatica HOM05D000509 ORTHO05D006393 2.9e-14 82.4 136 43.4
FAN03G2840 Fragaria x ananassa HOM05D000509 ORTHO05D006393 3.8e-14 82.0 128 45.3
Phvul.008G065500 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 3.8e-14 82.0 131 42.7
Rhsim07G0117300 Rhododendron simsii HOM05D000509 ORTHO05D006393 3.8e-14 82.0 135 42.2
CSS0014656 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 5.0e-14 81.6 128 43.8
Eucgr.B00880 Eucalyptus grandis HOM05D000509 ORTHO05D006393 5.0e-14 81.6 130 39.2
Ah.04g163760 Amaranthus hybridus HOM05D000509 ORTHO05D006393 8.5e-14 80.9 134 39.6
Nn6g33420 Nelumbo nucifera HOM05D000509 ORTHO05D006393 1.1e-13 80.5 129 43.4
Nitab4.5_0006762g0030 Nicotiana tabacum HOM05D000509 ORTHO05D006393 1.1e-13 80.5 136 39.0
Hund14886 Selenicereus undatus HOM05D000509 ORTHO05D006393 1.1e-13 80.5 136 44.1
CDE09G0401 Ceratophyllum demersum HOM05D000509 ORTHO05D006393 1.9e-13 79.7 127 40.9
FAN10G1528 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.9e-13 79.7 127 43.3
FAN10G1645 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.9e-13 79.7 127 43.3
PGR042G3203 Punica granatum HOM05D000509 ORTHO05D006393 2.5e-13 79.3 135 40.0
PGSC0003DMG400000042 Solanum tuberosum HOM05D000509 ORTHO05D006393 2.5e-13 79.3 132 41.7
MBI17_g24691_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 3.2e-13 79.0 103 44.7
Medtr7g077710 Medicago truncatula HOM05D000509 ORTHO05D006393 3.2e-13 79.0 79 55.7
Lalb_Chr03g0038131 Lupinus albus HOM05D000509 ORTHO05D006393 5.5e-13 78.2 134 41.0
QL01p005382 Quercus lobata HOM05D000509 ORTHO05D006393 5.5e-13 78.2 130 41.5
Haze_15506 Corylus avellana HOM05D000509 ORTHO05D006393 7.2e-13 77.8 110 41.8
Psat3g108360 Pisum sativum HOM05D000509 ORTHO05D006393 7.2e-13 77.8 134 41.8
GSVIVG01008341001 Vitis vinifera HOM05D000509 ORTHO05D006393 7.2e-13 77.8 125 41.6
Cfa003925 Carpinus fangiana HOM05D000509 ORTHO05D006393 9.4e-13 77.4 108 41.7
Manes.10G122200 Manihot esculenta HOM05D000509 ORTHO05D006393 9.4e-13 77.4 136 43.4
QL93p0259_0027 Quercus lobata HOM05D000509 ORTHO05D006393 1.2e-12 77.0 130 40.8
Actinidia33421 Actinidia chinensis HOM05D001542 ORTHO05D001416 1.6e-12 76.6 135 43.0
CiPaw.02G030900 Carya illinoinensis HOM05D000509 ORTHO05D006393 1.6e-12 76.6 129 38.8
SalBow6G4776 Salvia bowleyana HOM05D000509 ORTHO05D006393 2.7e-12 75.9 135 39.3
AUR62004883 Chenopodium quinoa HOM05D000509 ORTHO05D006393 3.6e-12 75.5 134 43.3
MD07G1137000 Malus domestica HOM05D000509 ORTHO05D006393 3.6e-12 75.5 126 42.9
MSTRG.20833 Avicennia marina HOM05D000509 ORTHO05D006393 4.7e-12 75.1 133 39.8
CiPaw.01G061300 Carya illinoinensis HOM05D000509 ORTHO05D006393 6.1e-12 74.7 123 41.5
Cc02_g38030 Coffea canephora HOM05D000509 ORTHO05D006393 6.1e-12 74.7 128 43.0
Prupe.2G170600 Prunus persica HOM05D000509 ORTHO05D006393 8.0e-12 74.3 138 39.9
Dinv32484 Davidia involucrata HOM05D000509 ORTHO05D006393 1.0e-11 73.9 113 40.7
TAR636G2420 Trochodendron aralioides HOM05D000509 ORTHO05D006393 1.0e-11 73.9 110 43.6
FAN06G1484 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.8e-11 73.2 150 38.0
CANSAT56G2260 Cannabis sativa HOM05D000509 ORTHO05D006393 3.0e-11 72.4 129 40.3
RcHm_v2.0_Chr1g0355271 Rosa chinensis HOM05D000509 ORTHO05D006393 4.0e-11 72.0 138 39.9
CSS0014005 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 5.2e-11 71.6 129 41.1
FAN01G0359 Fragaria x ananassa HOM05D000509 ORTHO05D006393 6.8e-11 71.2 127 40.2
DCAR_019105 Daucus carota HOM05D000509 ORTHO05D006393 8.8e-11 70.9 133 42.1
Manes.07G019100 Manihot esculenta HOM05D000509 ORTHO05D006393 8.8e-11 70.9 145 37.9
Rhsim07G0117600 Rhododendron simsii HOM05D000509 ORTHO05D006393 3.4e-10 68.9 135 40.0
Prupe.1G174800 Prunus persica HOM05D000509 ORTHO05D006393 4.4e-10 68.6 127 38.6
TPR.G37720 Trifolium pratense HOM05D000509 ORTHO05D006393 4.4e-10 68.6 118 44.9
ECA233G2837 Erigeron canadensis HOM05D000509 ORTHO05D006393 5.7e-10 68.2 132 38.6
Ciclev10022504m.g Citrus clementina HOM05D000509 ORTHO05D006393 9.8e-10 67.4 111 39.6
FAN06G3105 Fragaria x ananassa HOM05D000509 ORTHO05D006393 9.8e-10 67.4 114 40.4
MD01G1060700 Malus domestica HOM05D000509 ORTHO05D006393 9.8e-10 67.4 134 38.8
Solyc01g094630.3 Solanum lycopersicum HOM05D000509 ORTHO05D006393 9.8e-10 67.4 129 36.4
PSO782G0796 Papaver somniferum HOM05D000509 ORTHO05D006393 1.7e-09 66.6 142 37.3
TWI23G0635 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 1.7e-09 66.6 120 36.7
unitig_0.g1262 Utricularia gibba HOM05D000509 ORTHO05D006393 2.8e-09 65.9 131 37.4
THA.LOC104798540 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 6.3e-09 64.7 124 37.9
A09p53420 Brassica napus HOM05D000509 ORTHO05D006393 8.3e-09 64.3 89 42.7
BraA09t40768Z Brassica rapa HOM05D000509 ORTHO05D006393 8.3e-09 64.3 89 42.7
Sopen01g038440 Solanum pennellii HOM05D000509 ORTHO05D006393 1.1e-08 63.9 129 34.9
Eucgr.L01454 Eucalyptus grandis HOM05D000509 ORTHO05D006393 1.8e-08 63.2 106 39.6
Rhsim07G0118400 Rhododendron simsii HOM05D000509 ORTHO05D006393 3.1e-08 62.4 118 39.0
Ah.12g064210 Amaranthus hybridus HOM05D000509 ORTHO05D006393 4.1e-08 62.0 112 39.3
PSO478G1119 Papaver somniferum HOM05D000509 ORTHO05D006393 7.0e-08 61.2 91 44.0
SEGI_38599 Sequoiadendron giganteum HOM05D000509 ORTHO05D006393 7.0e-08 61.2 145 35.2
Lsat_1_v5_gn_8_97941 Lactuca sativa HOM05D002211 ORTHO05D002206 1.6e-07 60.1 96 40.6
COL.COLO4_20186 Corchorus olitorius HOM05D000509 ORTHO05D006393 2.7e-07 59.3 148 35.1
Aa31LG1G27330 Aethionema arabicum HOM05D000509 ORTHO05D006393 3.5e-07 58.9 79 44.3
Glyma.09G259300 Glycine max HOM05D000509 ORTHO05D006393 3.5e-07 58.9 62 50.0
ATR0680G086 Amborella trichopoda HOM05D000509 ORTHO05D006393 5.9e-07 58.2 97 39.2
C08p36230 Brassica napus HOM05D000509 ORTHO05D006393 1.0e-06 57.4 120 35.0
BolC8t51205H Brassica oleracea HOM05D000509 ORTHO05D006393 1.0e-06 57.4 120 35.0
AUR62001076 Chenopodium quinoa HOM05D000509 ORTHO05D006393 1.3e-06 57.0 152 33.6
Thhalv10006311m.g Eutrema salsugineum HOM05D000509 ORTHO05D006393 1.3e-06 57.0 78 38.5
Migut.B01755 Erythranthe guttata HOM05D000509 ORTHO05D006393 1.7e-06 56.6 124 37.1
CARHR171710 Cardamine hirsuta HOM05D000509 ORTHO05D006393 2.9e-06 55.8 78 38.5
Sed0001004 Sechium edule HOM05D000509 ORTHO05D006393 5.0e-06 55.1 136 33.8


User provided reference genes

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