Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb038770 Zea mays HOM05D006038 ORTHO05D007547 7.8e-45 183.3 87 100.0
Zm00001eb046820 Zea mays HOM05D006038 ORTHO05D007547 7.8e-45 183.3 87 100.0
Zm00001eb051760 Zea mays HOM05D006038 ORTHO05D007547 4.3e-43 177.6 84 100.0
Zm00001eb253640 Zea mays HOM05D006038 ORTHO05D007547 6.8e-33 143.7 68 98.5
Zm00001eb124580 Zea mays HOM05D006038 ORTHO05D007547 6.6e-28 127.1 65 92.3
Zm00001eb354900 Zea mays HOM05D002913 ORTHO05D026003 8.9e-17 90.1 78 62.8
Zm00001eb021100 Zea mays HOM05D002913 ORTHO05D026003 2.0e-16 89.0 66 68.2
Zm00001eb156390 Zea mays HOM05D009386 ORTHO05D011419 2.0e-16 89.0 66 68.2
Zm00001eb343430 Zea mays HOM05D002913 ORTHO05D020952 2.0e-16 89.0 66 68.2
Zm00001eb369920 Zea mays HOM05D006038 ORTHO05D007547 9.9e-16 86.7 49 89.8
Zm00001eb177980 Zea mays HOM05D006038 ORTHO05D007547 2.9e-15 85.1 59 71.2
Os08g0266600 Oryza sativa ssp. japonica HOM05D006038 ORTHO05D007547 4.9e-15 84.3 56 75.0
Manes.14G113700 Manihot esculenta HOM05D006038 ORTHO05D007547 3.5e-13 78.2 53 69.8
Ciclev10008825m.g Citrus clementina HOM05D006038 ORTHO05D007547 6.0e-13 77.4 52 69.2
CANSAT11G1787 Cannabis sativa HOM05D006038 ORTHO05D007547 7.8e-13 77.0 53 67.9
SGA_v2.0_scaffold265G46074 Striga asiatica HOM05D006038 ORTHO05D007547 7.8e-13 77.0 53 66.0
Lj7A464G38 Lonicera japonica HOM05D006038 ORTHO05D007547 1.0e-12 76.6 53 66.0
Nitab4.5_0002809g0020 Nicotiana tabacum HOM05D006038 ORTHO05D007547 1.0e-12 76.6 53 66.0
Peaxi162Scf00563g00418 Petunia axillaris HOM05D006038 ORTHO05D007547 1.0e-12 76.6 53 66.0
PGSC0003DMG400011212 Solanum tuberosum HOM05D006038 ORTHO05D007547 1.0e-12 76.6 53 66.0
GSVIVG01023690001 Vitis vinifera HOM05D006038 ORTHO05D007547 1.0e-12 76.6 53 67.9
ATR0580G061 Amborella trichopoda HOM05D006038 ORTHO05D007547 1.3e-12 76.3 53 62.3
CSS0006550 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.3e-12 76.3 53 66.0
CSS0019709 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.3e-12 76.3 53 66.0
CSS0047172 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.3e-12 76.3 53 66.0
ECA236G4218 Erigeron canadensis HOM05D006038 ORTHO05D007547 1.3e-12 76.3 53 67.9
Dinv42816 Davidia involucrata HOM05D006038 ORTHO05D007547 1.7e-12 75.9 53 66.0
Dinv43284 Davidia involucrata HOM05D006038 ORTHO05D007547 1.7e-12 75.9 53 66.0
Thecc.09G154200 Theobroma cacao HOM05D006038 ORTHO05D007547 1.7e-12 75.9 53 66.0
FvH4_4g09770 Fragaria vesca HOM05D006038 ORTHO05D007547 2.3e-12 75.5 53 64.2
FAN07G2585 Fragaria x ananassa HOM05D006038 ORTHO05D007547 2.3e-12 75.5 53 64.2
FAN17G0258 Fragaria x ananassa HOM05D006038 ORTHO05D007547 2.3e-12 75.5 53 64.2
FAN22G1283 Fragaria x ananassa HOM05D006038 ORTHO05D007547 2.3e-12 75.5 53 64.2
Gohir.D05G008700 Gossypium hirsutum HOM05D006038 ORTHO05D007547 2.3e-12 75.5 53 64.2
Gorai.009G008900 Gossypium raimondii HOM05D006038 ORTHO05D007547 2.3e-12 75.5 53 64.2
Oeu027617.1 Olea europaea HOM05D006038 ORTHO05D007547 2.3e-12 75.5 53 66.0
vmacro06051 Vaccinium macrocarpon HOM05D006038 ORTHO05D007547 2.3e-12 75.5 53 66.0
Actinidia38659 Actinidia chinensis HOM05D006038 ORTHO05D007547 3.0e-12 75.1 52 69.2
CAN.G1190.21 Capsicum annuum HOM05D006038 ORTHO05D007547 3.0e-12 75.1 53 64.2
Gohir.A05G007900 Gossypium hirsutum HOM05D006038 ORTHO05D007547 3.0e-12 75.1 53 64.2
Phvul.003G153400 Phaseolus vulgaris HOM05D006038 ORTHO05D007547 3.0e-12 75.1 53 62.3
Solyc07g006010.3 Solanum lycopersicum HOM05D006038 ORTHO05D007547 3.0e-12 75.1 53 64.2
Sopen07g002150 Solanum pennellii HOM05D006038 ORTHO05D007547 3.0e-12 75.1 53 64.2
VMungo1215G1375 Vigna mungo HOM05D006038 ORTHO05D007547 3.0e-12 75.1 53 62.3
CSS0049632 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 3.9e-12 74.7 53 66.0
Potri.006G180300 Populus trichocarpa HOM05D006038 ORTHO05D007547 3.9e-12 74.7 53 66.0
Cc06_g14480 Coffea canephora HOM05D006038 ORTHO05D007547 5.1e-12 74.3 53 64.2
Migut.J01393 Erythranthe guttata HOM05D006038 ORTHO05D007547 5.1e-12 74.3 53 64.2
PGR114G0005 Punica granatum HOM05D006038 ORTHO05D007547 5.1e-12 74.3 53 64.2
PGR142G2424 Punica granatum HOM05D006038 ORTHO05D007547 5.1e-12 74.3 53 64.2
RcHm_v2.0_Chr4g0405491 Rosa chinensis HOM05D006038 ORTHO05D007547 5.1e-12 74.3 53 64.2
Nn8g40105 Nelumbo nucifera HOM05D006038 ORTHO05D007547 6.6e-12 73.9 53 64.2
Prupe.1G102000 Prunus persica HOM05D006038 ORTHO05D007547 6.6e-12 73.9 53 66.0
HPP92_020613 Vanilla planifolia HOM05D006038 ORTHO05D007547 6.6e-12 73.9 53 66.0
MSTRG.6162 Avicennia marina HOM05D006038 ORTHO05D007547 8.7e-12 73.6 53 62.3
Cpa.g.sc199.14 Carica papaya HOM05D006038 ORTHO05D007547 8.7e-12 73.6 53 64.2
TWI63G0196 Tripterygium wilfordii HOM05D006038 ORTHO05D007547 8.7e-12 73.6 53 62.3
CSS0029746 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.1e-11 73.2 53 64.2
MD10G1281400 Malus domestica HOM05D006038 ORTHO05D007547 1.1e-11 73.2 53 66.0
Sabra06G0137300 Salix brachista HOM05D006038 ORTHO05D007547 1.1e-11 73.2 53 66.0
CSS0022095 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.5e-11 72.8 53 64.2
Cfa020781 Carpinus fangiana HOM05D006038 ORTHO05D007547 1.5e-11 72.8 53 64.2
QL02p094222 Quercus lobata HOM05D006038 ORTHO05D007547 1.5e-11 72.8 53 62.3
THA.LOC104803556 Tarenaya hassleriana HOM05D006038 ORTHO05D007547 1.5e-11 72.8 53 62.3
Haze_19138 Corylus avellana HOM05D006038 ORTHO05D007547 1.9e-11 72.4 53 62.3
Glyma.02G206900 Glycine max HOM05D006038 ORTHO05D007547 2.5e-11 72.0 53 58.5
Glyma.17G071100 Glycine max HOM05D006038 ORTHO05D007547 2.5e-11 72.0 53 58.5
Lalb_Chr13g0300671 Lupinus albus HOM05D006038 ORTHO05D007547 2.5e-11 72.0 53 58.5
AT4G30840 Arabidopsis thaliana HOM05D006038 ORTHO05D007547 3.3e-11 71.6 51 66.7
Aa31LG2G19530 Aethionema arabicum HOM05D006038 ORTHO05D007547 4.3e-11 71.2 52 61.5
AL7G21280 Arabidopsis lyrata HOM05D006038 ORTHO05D007547 4.3e-11 71.2 51 64.7
BcaNung02736 Brassica carinata HOM05D006038 ORTHO05D007547 4.3e-11 71.2 51 64.7
Carub.0007s0972 Capsella rubella HOM05D006038 ORTHO05D007547 4.3e-11 71.2 51 64.7
CARHR238700 Cardamine hirsuta HOM05D006038 ORTHO05D007547 4.3e-11 71.2 51 64.7
CiPaw.15G164200 Carya illinoinensis HOM05D006038 ORTHO05D007547 4.3e-11 71.2 53 64.2
HanXRQChr06g0179781 Helianthus annuus HOM05D006038 ORTHO05D007547 4.3e-11 71.2 53 62.3
Lj4g0023904 Lotus japonicus HOM05D006038 ORTHO05D007547 4.3e-11 71.2 53 58.5
TPR.G22112 Trifolium pratense HOM05D006038 ORTHO05D007547 4.3e-11 71.2 53 58.5
Medtr4g130280 Medicago truncatula HOM05D006038 ORTHO05D007547 5.6e-11 70.9 53 58.5
Psat4g010160 Pisum sativum HOM05D006038 ORTHO05D007547 5.6e-11 70.9 53 58.5
BraA03t15077Z Brassica rapa HOM05D006038 ORTHO05D007547 7.3e-11 70.5 51 64.7
TAR625G0922 Trochodendron aralioides HOM05D006038 ORTHO05D007547 7.3e-11 70.5 50 66.0
CSS0031036 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 9.6e-11 70.1 53 58.5
CSS0047764 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 9.6e-11 70.1 53 62.3
Sp7g28720 Schrenkiella parvula HOM05D006038 ORTHO05D007547 1.3e-10 69.7 51 62.7
DCAR_020091 Daucus carota HOM05D006038 ORTHO05D007547 1.6e-10 69.3 53 56.6
Aqoxy7G02400 Aquilegia oxysepala HOM05D006038 ORTHO05D007547 2.1e-10 68.9 53 54.7
Atru.chr7.352 Acer truncatum HOM05D006038 ORTHO05D007547 4.8e-10 67.8 50 66.0
CDE04G0171 Ceratophyllum demersum HOM05D006038 ORTHO05D007547 8.1e-10 67.0 53 64.2
Ca_21155_v3 Cicer arietinum L. HOM05D006038 ORTHO05D007547 1.1e-09 66.6 53 54.7
MELO3C004111.2 Cucumis melo HOM05D006038 ORTHO05D007547 1.4e-09 66.2 53 56.6
Sed0013580 Sechium edule HOM05D006038 ORTHO05D007547 1.8e-09 65.9 53 54.7
Hund08960 Selenicereus undatus HOM05D006038 ORTHO05D007547 3.1e-09 65.1 53 56.6
ClCG02G014260 Citrullus lanatus HOM05D006038 ORTHO05D007547 5.3e-09 64.3 52 55.8
CsaV3_2G007740 Cucumis sativus L. HOM05D006038 ORTHO05D007547 5.3e-09 64.3 53 54.7
SEGI_08614 Sequoiadendron giganteum HOM05D006038 ORTHO05D007547 5.3e-09 64.3 50 60.0
AUR62028377 Chenopodium quinoa HOM05D006038 ORTHO05D007547 6.9e-09 63.9 53 54.7
EL10Ac8g18905 Beta vulgaris HOM05D006038 ORTHO05D007547 9.0e-09 63.5 53 54.7
AUR62025374 Chenopodium quinoa HOM05D006038 ORTHO05D007547 9.0e-09 63.5 53 52.8
Sc14g0000990 Simmondsia chinensis HOM05D006038 ORTHO05D007547 9.0e-09 63.5 53 56.6
PSO017G0013 Papaver somniferum HOM05D006038 ORTHO05D007547 2.6e-08 62.0 50 58.0
PSO170G4900 Papaver somniferum HOM05D006038 ORTHO05D007547 2.6e-08 62.0 50 58.0
Lsat_1_v5_gn_8_64821 Lactuca sativa HOM05D006038 ORTHO05D007547 7.6e-08 60.5 43 67.4
CSS0034156 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.3e-07 59.7 53 56.6
CSS0009428 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 4.9e-07 57.8 43 65.1
Rhsim03G0259500 Rhododendron simsii HOM05D006038 ORTHO05D007547 1.4e-06 56.2 39 69.2
Nitab4.5_0001036g0170 Nicotiana tabacum HOM05D006038 ORTHO05D007547 2.4e-06 55.5 39 66.7
Eucgr.K03188 Eucalyptus grandis HOM05D006038 ORTHO05D007547 7.1e-06 53.9 43 60.5


User provided reference genes

Program Settings