Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 5.4e-63 244.2 126 100.0
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 4.3e-52 208.0 129 87.6
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 2.3e-42 175.6 125 76.0
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 9.5e-36 153.7 112 70.5
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 1.2e-35 153.3 136 64.7
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 1.6e-35 152.9 135 64.4
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 1.6e-35 152.9 115 69.6
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 2.8e-35 152.1 127 69.3
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 2.8e-35 152.1 115 70.4
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 3.6e-35 151.8 111 70.3
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 6.2e-35 151.0 111 69.4
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 6.2e-35 151.0 114 71.1
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 6.2e-35 151.0 114 69.3
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.1e-34 150.2 115 71.3
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 1.4e-34 149.8 115 69.6
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 1.4e-34 149.8 114 68.4
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 1.8e-34 149.4 132 62.1
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 1.8e-34 149.4 132 62.1
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 1.8e-34 149.4 132 62.1
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 1.8e-34 149.4 124 66.1
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 1.8e-34 149.4 113 70.8
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 2.3e-34 149.1 116 69.8
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 2.3e-34 149.1 116 69.8
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 2.3e-34 149.1 113 69.9
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 2.3e-34 149.1 113 69.9
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 2.3e-34 149.1 112 69.6
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 3.1e-34 148.7 137 63.5
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 3.1e-34 148.7 137 63.5
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 3.1e-34 148.7 111 71.2
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 3.1e-34 148.7 114 69.3
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 4.0e-34 148.3 127 63.0
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 4.0e-34 148.3 113 66.4
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 1.2e-33 146.7 115 69.6
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 1.2e-33 146.7 115 69.6
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 1.5e-33 146.4 123 64.2
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 3.4e-33 145.2 116 68.1
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 4.4e-33 144.8 111 69.4
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 4.4e-33 144.8 122 64.8
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 4.4e-33 144.8 126 62.7
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 5.8e-33 144.4 114 65.8
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 5.8e-33 144.4 115 67.8
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 5.8e-33 144.4 116 69.0
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 5.8e-33 144.4 116 68.1
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 7.6e-33 144.1 115 66.1
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 7.6e-33 144.1 129 64.3
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 7.6e-33 144.1 115 69.6
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 9.9e-33 143.7 113 72.6
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 9.9e-33 143.7 126 61.9
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 9.9e-33 143.7 111 68.5
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 9.9e-33 143.7 111 68.5
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 9.9e-33 143.7 114 66.7
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 9.9e-33 143.7 115 65.2
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 9.9e-33 143.7 115 67.0
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 9.9e-33 143.7 116 68.1
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 9.9e-33 143.7 116 68.1
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 1.3e-32 143.3 114 66.7
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 1.3e-32 143.3 112 68.8
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 1.3e-32 143.3 115 67.8
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 1.7e-32 142.9 115 67.0
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 1.7e-32 142.9 115 67.0
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 2.2e-32 142.5 114 64.9
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 2.2e-32 142.5 113 67.3
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 2.9e-32 142.1 115 65.2
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 2.9e-32 142.1 113 69.9
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 2.9e-32 142.1 115 68.7
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 2.9e-32 142.1 95 75.8
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 2.9e-32 142.1 112 66.1
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 2.9e-32 142.1 113 68.1
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 2.9e-32 142.1 112 67.9
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 2.9e-32 142.1 116 68.1
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 2.9e-32 142.1 126 63.5
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 2.9e-32 142.1 108 67.6
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 3.7e-32 141.7 112 67.0
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 3.7e-32 141.7 127 63.8
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 3.7e-32 141.7 132 61.4
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 3.7e-32 141.7 111 67.6
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 3.7e-32 141.7 115 68.7
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 4.9e-32 141.4 112 71.4
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 4.9e-32 141.4 116 67.2
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 4.9e-32 141.4 112 69.6
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 4.9e-32 141.4 111 66.7
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 6.4e-32 141.0 93 78.5
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 6.4e-32 141.0 112 71.4
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 6.4e-32 141.0 127 61.4
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 6.4e-32 141.0 130 63.1
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 8.4e-32 140.6 113 67.3
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 8.4e-32 140.6 113 68.1
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 8.4e-32 140.6 113 68.1
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 1.1e-31 140.2 119 66.4
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 1.1e-31 140.2 112 64.3
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 1.4e-31 139.8 129 61.2
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 1.4e-31 139.8 112 68.8
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 1.9e-31 139.4 130 62.3
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 1.9e-31 139.4 115 64.3
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 1.9e-31 139.4 113 69.9
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 1.9e-31 139.4 114 67.5
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 1.9e-31 139.4 115 66.1
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 2.4e-31 139.0 115 64.3
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 3.2e-31 138.7 115 66.1
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 4.1e-31 138.3 126 62.7
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 4.1e-31 138.3 115 64.3
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 4.1e-31 138.3 115 63.5
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 4.1e-31 138.3 115 65.2
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 5.4e-31 137.9 76 88.2
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 5.4e-31 137.9 114 65.8
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 5.4e-31 137.9 99 76.8
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 9.2e-31 137.1 111 68.5
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 9.2e-31 137.1 115 66.1
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 9.2e-31 137.1 126 61.9
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 9.2e-31 137.1 126 61.9
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 9.2e-31 137.1 98 72.4
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 1.2e-30 136.7 92 76.1
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 1.6e-30 136.3 100 72.0
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 1.6e-30 136.3 97 75.3
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 1.6e-30 136.3 99 73.7
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 2.1e-30 136.0 110 67.3
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 2.7e-30 135.6 114 63.2
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 3.5e-30 135.2 123 65.0
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 4.6e-30 134.8 95 74.7
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 4.6e-30 134.8 115 65.2
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 4.6e-30 134.8 76 85.5
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 4.6e-30 134.8 127 61.4
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 4.6e-30 134.8 76 84.2
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 6.0e-30 134.4 116 62.9
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 7.8e-30 134.0 96 74.0
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 7.8e-30 134.0 88 79.5
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 1.0e-29 133.7 113 66.4
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.0e-29 133.7 112 67.0
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.0e-29 133.7 112 67.0
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 1.7e-29 132.9 76 85.5
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.3e-29 132.5 110 66.4
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 6.6e-29 131.0 109 67.0
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 1.9e-28 129.4 76 81.6
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 4.7e-27 124.8 128 57.0
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 4.4e-25 118.2 76 76.3
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 4.4e-25 118.2 112 60.7
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 1.7e-24 116.3 97 64.9
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 2.2e-24 115.9 71 81.7
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 3.8e-24 115.2 66 83.3
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 3.0e-21 105.5 81 65.4
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 9.6e-20 100.5 127 52.8
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 2.1e-19 99.4 126 55.6
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 2.8e-19 99.0 56 80.4
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 1.2e-17 93.6 89 57.3
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 9.9e-17 90.5 79 63.3
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.1e-15 87.0 55 76.4
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 1.0e-13 80.5 96 53.1
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 3.0e-13 79.0 77 55.8
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 1.5e-12 76.6 100 47.0
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 5.6e-12 74.7 77 55.8
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.3e-11 73.6 57 70.2
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 2.1e-11 72.8 46 76.1
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 8.1e-11 70.9 42 81.0
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 2.4e-07 59.3 37 67.6


User provided reference genes

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