Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb037970 Zea mays HOM05D003210 ORTHO05D000001 4.1e-144 516.2 715 100.0
Os08g0300700 Oryza sativa ssp. japonica HOM05D003210 ORTHO05D000001 4.7e-39 167.2 203 62.1
AUR62027713 Chenopodium quinoa HOM05D003210 ORTHO05D000001 7.1e-19 100.1 177 32.2
MD15G1441200 Malus domestica HOM05D003210 ORTHO05D000001 1.2e-18 99.4 176 33.0
AUR62039467 Chenopodium quinoa HOM05D003210 ORTHO05D000001 1.6e-18 99.0 183 31.1
CAN.G674.2 Capsicum annuum HOM05D003210 ORTHO05D000001 6.0e-18 97.1 190 45.8
Aqoxy6G00832 Aquilegia oxysepala HOM05D003210 ORTHO05D000001 2.3e-17 95.1 180 29.4
FAN03G0748 Fragaria x ananassa HOM05D003210 ORTHO05D000001 2.3e-17 95.1 183 30.6
FvH4_7g04271 Fragaria vesca HOM05D003210 ORTHO05D000001 5.1e-17 94.0 183 30.1
RcHm_v2.0_Chr1g0329241 Rosa chinensis HOM05D003210 ORTHO05D000001 1.9e-16 92.0 200 28.5
RcHm_v2.0_Chr2g0092171 Rosa chinensis HOM05D003210 ORTHO05D000001 3.3e-16 91.3 175 30.9
FAN28G0230 Fragaria x ananassa HOM05D003210 ORTHO05D000001 7.3e-16 90.1 175 29.7
MD08G1245900 Malus domestica HOM05D003210 ORTHO05D000001 7.3e-16 90.1 176 30.7
VMungo1215G2034 Vigna mungo HOM05D003210 ORTHO05D000001 7.3e-16 90.1 185 29.2
FvH4_2g11090 Fragaria vesca HOM05D003210 ORTHO05D000001 1.3e-15 89.4 173 30.1
FAN24G1052 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.3e-15 89.4 173 30.1
Psat3g169880 Pisum sativum HOM05D003210 ORTHO05D000001 3.6e-15 87.8 188 42.6
FAN20G1808 Fragaria x ananassa HOM05D003210 ORTHO05D000001 4.8e-15 87.4 173 31.8
Phvul.008G101600 Phaseolus vulgaris HOM05D003210 ORTHO05D000001 6.2e-15 87.0 176 42.6
FvH4_1g06430 Fragaria vesca HOM05D003210 ORTHO05D000001 1.8e-14 85.5 175 29.1
FAN19G0968 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.8e-14 85.5 175 29.1
GSVIVG01038280001 Vitis vinifera HOM05D003210 ORTHO05D000001 2.4e-14 85.1 185 45.4
FAN26G1074 Fragaria x ananassa HOM05D003210 ORTHO05D000001 9.0e-14 83.2 175 28.6
VMungo1383G3073 Vigna mungo HOM05D003210 ORTHO05D000001 2.6e-13 81.6 158 48.1
TWI53G0425 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 3.4e-13 81.3 188 35.6
Glyma.09G200200 Glycine max HOM05D003210 ORTHO05D000001 4.5e-13 80.9 187 39.0
TWI74G0121 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 5.8e-13 80.5 188 45.7
Sabra06G0098600 Salix brachista HOM05D003210 ORTHO05D000001 7.6e-13 80.1 77 48.1
Zm00001eb183350 Zea mays HOM05D003210 ORTHO05D000001 1.7e-12 79.0 197 30.5
PGSC0003DMG401028232 Solanum tuberosum HOM05D003210 ORTHO05D000001 2.2e-12 78.6 190 44.2
Potri.006G124900 Populus trichocarpa HOM05D003210 ORTHO05D000001 4.9e-12 77.4 196 44.4
Sopen10g032390 Solanum pennellii HOM05D003210 ORTHO05D000001 6.4e-12 77.0 190 42.6
Os02g0582300 Oryza sativa ssp. japonica HOM05D003210 ORTHO05D000001 8.4e-12 76.6 198 26.3
Thecc.01G191200 Theobroma cacao HOM05D003210 ORTHO05D000001 1.4e-11 75.9 82 40.2
Cpa.g.sc10.84 Carica papaya HOM05D003210 ORTHO05D000001 1.9e-11 75.5 191 39.8
Manes.12G124600 Manihot esculenta HOM05D003210 ORTHO05D000001 2.4e-11 75.1 176 47.2
CSS0000965 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 3.2e-11 74.7 76 42.1
CsaV3_6G031450 Cucumis sativus L. HOM05D003210 ORTHO05D000001 3.2e-11 74.7 176 46.6
Lsat_1_v5_gn_7_6901 Lactuca sativa HOM05D003210 ORTHO05D000001 3.2e-11 74.7 203 40.9
Nitab4.5_0005257g0020 Nicotiana tabacum HOM05D003210 ORTHO05D000001 3.2e-11 74.7 77 46.8
Phvul.002G145400 Phaseolus vulgaris HOM05D003210 ORTHO05D000001 3.2e-11 74.7 180 41.7
Solyc10g081880.3 Solanum lycopersicum HOM05D003210 ORTHO05D000001 3.2e-11 74.7 190 44.7
SHI21874 Sapria himalayana HOM05D003210 ORTHO05D000001 4.2e-11 74.3 184 27.7
Prupe.1G583300 Prunus persica HOM05D003210 ORTHO05D000001 7.1e-11 73.6 176 33.5
Nitab4.5_0002364g0030 Nicotiana tabacum HOM05D003210 ORTHO05D000001 9.3e-11 73.2 190 43.7
HanXRQChr04g0122161 Helianthus annuus HOM05D003210 ORTHO05D000001 1.2e-10 72.8 171 41.5
Migut.H02282 Erythranthe guttata HOM05D003210 ORTHO05D000001 2.7e-10 71.6 178 43.3
FvH4_6g41080 Fragaria vesca HOM05D003210 ORTHO05D000001 4.6e-10 70.9 172 25.0
FAN14G2019 Fragaria x ananassa HOM05D003210 ORTHO05D000001 4.6e-10 70.9 172 25.0
Nitab4.5_0000574g0030 Nicotiana tabacum HOM05D003210 ORTHO05D000001 1.3e-09 69.3 190 43.2
Peaxi162Scf00370g00062 Petunia axillaris HOM05D003210 ORTHO05D000001 1.8e-09 68.9 190 41.1
Prupe.4G256300 Prunus persica HOM05D003210 ORTHO05D000001 1.8e-09 68.9 172 24.4
HanXRQChr06g0169331 Helianthus annuus HOM05D003210 ORTHO05D000001 2.3e-09 68.6 165 45.5
MELO3C026530.2 Cucumis melo HOM05D003210 ORTHO05D000001 5.1e-09 67.4 176 46.0
Lalb_Chr19g0125341 Lupinus albus HOM05D003210 ORTHO05D000001 5.1e-09 67.4 67 47.8
PGSC0003DMG400023572 Solanum tuberosum HOM05D003210 ORTHO05D000001 5.1e-09 67.4 190 42.6
THA.LOC104819041 Tarenaya hassleriana HOM05D003210 ORTHO05D000001 5.1e-09 67.4 197 37.1
Cc03_g12590 Coffea canephora HOM05D003210 ORTHO05D000001 8.7e-09 66.6 61 45.9
FAN26G0660 Fragaria x ananassa HOM05D000020 ORTHO05D000001 8.7e-09 66.6 156 32.1
Carub.0008s2641 Capsella rubella HOM05D003210 ORTHO05D000001 1.5e-08 65.9 172 28.5
BcaC01g02798 Brassica carinata HOM05D003210 ORTHO05D000001 1.9e-08 65.5 190 23.7
C03p60210 Brassica napus HOM05D003210 ORTHO05D000001 1.9e-08 65.5 190 23.7
BolC3t18283H Brassica oleracea HOM05D003210 ORTHO05D000001 1.9e-08 65.5 190 23.7
Gohir.A12G085200 Gossypium hirsutum HOM05D003210 ORTHO05D000001 1.9e-08 65.5 70 44.3
Gorai.008G093300 Gossypium raimondii HOM05D003210 ORTHO05D000001 2.5e-08 65.1 69 44.9
Sp2g28660 Schrenkiella parvula HOM05D003210 ORTHO05D000001 4.3e-08 64.3 170 24.7
MD11G1188000 Malus domestica HOM05D003210 ORTHO05D000001 5.6e-08 63.9 68 41.2
EL10Ac6g15188 Beta vulgaris HOM05D003210 ORTHO05D000001 7.4e-08 63.5 140 27.1
Oeu017113.2 Olea europaea HOM05D000258 ORTHO05D000001 9.6e-08 63.2 60 48.3
AT5G65560 Arabidopsis thaliana HOM05D003210 ORTHO05D000001 1.6e-07 62.4 187 25.7
Prupe.3G201200 Prunus persica HOM05D003210 ORTHO05D000001 1.6e-07 62.4 176 24.4
SalBow3G1735 Salvia bowleyana HOM05D003210 ORTHO05D000001 3.7e-07 61.2 179 43.6
AL2G37540 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 8.1e-07 60.1 192 25.5
AL7G34260 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 1.4e-06 59.3 172 40.1
BraA06t26165Z Brassica rapa HOM05D003210 ORTHO05D000001 2.4e-06 58.5 79 36.7
AL8G43160 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 4.0e-06 57.8 170 24.1
A06p32400 Brassica napus HOM05D003210 ORTHO05D000001 6.9e-06 57.0 79 35.4
SHI10143 Sapria himalayana HOM05D003210 ORTHO05D000001 9.0e-06 56.6 63 41.3


User provided reference genes

Program Settings