Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 1.5e-239 832.4 422 100.0
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 2.7e-207 725.3 422 86.0
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 2.3e-166 589.3 423 68.8
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 4.3e-157 558.5 410 68.5
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 1.1e-155 553.9 424 68.2
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 2.0e-130 469.9 425 55.5
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 2.2e-129 466.5 425 56.0
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 3.9e-126 455.7 425 53.6
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 1.5e-125 453.8 425 53.9
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 4.1e-123 445.7 425 54.4
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 1.5e-122 443.7 425 53.2
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 4.5e-122 442.2 425 53.6
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 5.9e-122 441.8 425 54.1
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 7.7e-122 441.4 425 53.2
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 1.0e-121 441.0 426 53.5
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 3.8e-121 439.1 425 52.7
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 5.0e-121 438.7 425 52.5
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 1.1e-120 437.6 425 52.2
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 1.1e-120 437.6 425 52.9
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 1.9e-120 436.8 425 53.2
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 3.2e-120 436.0 427 52.2
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 3.2e-120 436.0 425 52.5
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 4.2e-120 435.6 425 53.2
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 5.5e-120 435.3 423 53.2
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 5.5e-120 435.3 425 52.5
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 7.2e-120 434.9 425 53.2
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 9.4e-120 434.5 425 52.9
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 9.4e-120 434.5 426 53.8
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 1.6e-119 433.7 425 52.0
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 7.9e-119 431.4 425 52.9
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 1.0e-118 431.0 425 52.7
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 1.4e-118 430.6 425 52.5
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 1.4e-118 430.6 425 52.9
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 1.8e-118 430.3 426 51.4
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 3.0e-118 429.5 423 52.2
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 3.9e-118 429.1 428 53.3
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 3.9e-118 429.1 425 51.5
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 8.8e-118 427.9 425 51.5
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 8.8e-118 427.9 425 52.5
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 1.1e-117 427.6 425 51.8
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 1.1e-117 427.6 425 52.2
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.5e-117 427.2 426 52.1
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 1.5e-117 427.2 425 52.0
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 2.0e-117 426.8 427 52.5
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 2.6e-117 426.4 425 52.2
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 2.6e-117 426.4 428 51.9
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 2.6e-117 426.4 425 52.2
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 3.3e-117 426.0 426 52.1
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 3.3e-117 426.0 424 52.1
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 9.7e-117 424.5 423 51.3
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.3e-116 424.1 425 51.8
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 1.3e-116 424.1 425 52.7
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 1.3e-116 424.1 425 52.0
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 1.7e-116 423.7 424 52.4
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 2.8e-116 422.9 426 51.2
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 2.8e-116 422.9 425 51.3
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 2.8e-116 422.9 425 51.3
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 3.7e-116 422.5 425 51.5
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 3.7e-116 422.5 426 51.4
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 4.8e-116 422.2 425 50.8
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 6.3e-116 421.8 425 51.5
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 6.3e-116 421.8 426 50.9
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 6.3e-116 421.8 423 52.7
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 8.2e-116 421.4 425 51.3
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 8.2e-116 421.4 425 51.1
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 1.1e-115 421.0 425 51.3
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 1.1e-115 421.0 425 51.1
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 1.8e-115 420.2 425 50.4
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 1.8e-115 420.2 414 52.9
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 4.1e-115 419.1 425 51.1
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 7.0e-115 418.3 426 50.9
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 7.0e-115 418.3 425 51.3
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 9.1e-115 417.9 425 51.1
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 1.5e-114 417.2 425 50.6
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 1.5e-114 417.2 423 51.8
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 2.0e-114 416.8 426 50.9
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 2.0e-114 416.8 425 49.6
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 2.0e-114 416.8 424 51.7
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 2.6e-114 416.4 425 50.6
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 3.4e-114 416.0 425 50.8
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 4.5e-114 415.6 426 51.6
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 1.0e-113 414.5 425 52.2
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 1.3e-113 414.1 425 50.1
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.7e-113 413.7 425 50.4
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 1.7e-113 413.7 425 49.9
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 2.2e-113 413.3 425 50.4
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 2.2e-113 413.3 426 50.5
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 2.9e-113 412.9 424 50.9
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 2.9e-113 412.9 425 50.8
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 6.5e-113 411.8 425 51.3
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 1.1e-112 411.0 411 51.6
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 1.9e-112 410.2 425 50.1
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 1.9e-112 410.2 410 51.7
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 2.5e-112 409.8 415 50.6
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 4.2e-112 409.1 425 50.4
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 2.1e-111 406.8 424 50.5
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 8.0e-111 404.8 425 49.2
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 1.4e-110 404.1 423 49.9
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 1.8e-110 403.7 425 50.6
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 1.8e-110 403.7 425 50.1
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 3.9e-110 402.5 425 49.9
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 5.2e-110 402.1 425 49.9
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 8.8e-110 401.4 424 49.3
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 2.0e-109 400.2 425 49.4
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 2.0e-109 400.2 425 49.4
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 2.6e-109 399.8 425 49.9
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 2.6e-109 399.8 425 51.5
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 9.7e-109 397.9 425 47.1
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 1.1e-107 394.4 425 48.9
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 1.8e-107 393.7 425 49.4
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 2.4e-107 393.3 425 49.2
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 2.4e-107 393.3 428 49.8
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 1.7e-105 387.1 425 48.5
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 3.8e-105 386.0 425 46.6
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 6.1e-103 378.6 354 55.6
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 5.2e-102 375.6 426 47.7
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 5.7e-101 372.1 426 46.5
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 1.1e-99 367.9 382 50.5
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 1.9e-96 357.1 408 47.1
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 2.0e-82 310.5 301 53.8
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 4.5e-82 309.3 259 58.7
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 1.6e-79 300.8 407 42.5
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 3.3e-72 276.6 367 43.9
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 2.0e-69 267.3 374 40.6
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 5.8e-69 265.8 282 47.9
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 2.4e-59 233.8 302 46.0
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 1.0e-49 201.8 253 43.1
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 1.7e-49 201.1 301 38.2
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 6.2e-47 192.6 136 67.6
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 1.7e-41 174.5 132 60.6
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 2.4e-35 154.1 155 52.3
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 5.1e-25 119.8 129 48.8
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.5e-24 118.2 99 58.6
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 6.9e-22 109.4 115 50.4
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 3.4e-21 107.1 70 68.6
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.0e-20 105.5 73 65.8
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 2.9e-20 104.0 70 68.6
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 2.9e-20 104.0 70 68.6
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 1.1e-19 102.1 70 67.1
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 8.5e-12 75.9 78 51.3
SMO111G0157 Selaginella moellendorffii HOM05D019739 ORTHO05D026044 2.1e-10 71.2 410 25.6


User provided reference genes

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