Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb037820 Zea mays HOM05D005481 ORTHO05D006779 6.5e-182 641.0 417 100.0
Os08g0467400 Oryza sativa ssp. japonica HOM05D005481 ORTHO05D006779 1.3e-94 350.9 327 74.9
Glyma.05G137400 Glycine max HOM05D005481 ORTHO05D006779 3.3e-69 266.5 324 60.2
Lj4g0017847 Lotus japonicus HOM05D005481 ORTHO05D006779 1.7e-68 264.2 319 59.6
Psat7g085400 Pisum sativum HOM05D005481 ORTHO05D006779 2.2e-68 263.8 328 57.6
Aqoxy3G04008 Aquilegia oxysepala HOM05D005481 ORTHO05D006779 2.8e-68 263.5 326 59.5
QL03p039175 Quercus lobata HOM05D005481 ORTHO05D006779 2.8e-68 263.5 334 54.5
Sed0010601 Sechium edule HOM05D005481 ORTHO05D006779 3.7e-68 263.1 311 56.9
TPR.G11925 Trifolium pratense HOM05D005481 ORTHO05D006779 3.7e-68 263.1 329 57.4
CiPaw.05G158800 Carya illinoinensis HOM05D005481 ORTHO05D006779 6.3e-68 262.3 324 53.7
Potri.008G139900 Populus trichocarpa HOM05D005481 ORTHO05D006779 8.2e-68 261.9 334 55.1
Cfa022222 Carpinus fangiana HOM05D005481 ORTHO05D006779 1.8e-67 260.8 327 53.8
HanXRQChr17g0566271 Helianthus annuus HOM05D005481 ORTHO05D006779 1.8e-67 260.8 317 59.3
GSVIVG01011593001 Vitis vinifera HOM05D005481 ORTHO05D006779 2.4e-67 260.4 319 62.4
COL.COLO4_27578 Corchorus olitorius HOM05D005481 ORTHO05D006779 3.1e-67 260.0 322 57.1
CSS0011982 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 5.3e-67 259.2 328 58.2
FAN17G1043 Fragaria x ananassa HOM05D005481 ORTHO05D006779 9.1e-67 258.5 329 60.8
Gohir.A12G153800 Gossypium hirsutum HOM05D005481 ORTHO05D006779 1.2e-66 258.1 321 54.5
MELO3C020059.2 Cucumis melo HOM05D005481 ORTHO05D006779 1.6e-66 257.7 317 59.9
CsaV3_5G012960 Cucumis sativus L. HOM05D005481 ORTHO05D006779 3.5e-66 256.5 330 57.9
MD16G1013100 Malus domestica HOM05D005481 ORTHO05D006779 3.5e-66 256.5 330 58.8
Ca_18192_v3 Cicer arietinum L. HOM05D005481 ORTHO05D006779 4.5e-66 256.1 322 56.2
Eucgr.G02069 Eucalyptus grandis HOM05D005481 ORTHO05D006779 4.5e-66 256.1 330 55.5
TWI77G0967 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 4.5e-66 256.1 323 59.1
CDE05G3246 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 7.7e-66 255.4 317 58.4
MD13G1015600 Malus domestica HOM05D005481 ORTHO05D006779 7.7e-66 255.4 328 59.5
FAN07G1071 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.0e-65 255.0 329 59.0
PSO782G1235 Papaver somniferum HOM05D005481 ORTHO05D006779 1.0e-65 255.0 315 59.0
CAN.G966.8 Capsicum annuum HOM05D005481 ORTHO05D006779 1.3e-65 254.6 322 59.3
RcHm_v2.0_Chr4g0433701 Rosa chinensis HOM05D005481 ORTHO05D006779 1.3e-65 254.6 323 53.3
SalBow2G3020 Salvia bowleyana HOM05D005481 ORTHO05D006779 1.3e-65 254.6 325 55.7
CSS0010274 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 1.7e-65 254.2 319 60.2
Sopen04g003490 Solanum pennellii HOM05D005481 ORTHO05D006779 1.7e-65 254.2 324 58.3
ATR0598G125 Amborella trichopoda HOM05D005481 ORTHO05D006779 2.2e-65 253.8 325 56.6
Migut.E00569 Erythranthe guttata HOM05D005481 ORTHO05D006779 2.2e-65 253.8 311 58.5
FvH4_4g26130 Fragaria vesca HOM05D005481 ORTHO05D006779 2.9e-65 253.4 329 61.1
Solyc04g008340.2 Solanum lycopersicum HOM05D005481 ORTHO05D006779 2.9e-65 253.4 324 58.0
Manes.15G138800 Manihot esculenta HOM05D005481 ORTHO05D006779 5.0e-65 252.7 331 59.2
PSO063G6983 Papaver somniferum HOM05D005481 ORTHO05D006779 5.0e-65 252.7 322 55.9
ClCG11G000990 Citrullus lanatus HOM05D005481 ORTHO05D006779 6.5e-65 252.3 323 54.5
Glyma.08G092700 Glycine max HOM05D005481 ORTHO05D006779 6.5e-65 252.3 325 60.0
CANSAT78G1557 Cannabis sativa HOM05D005481 ORTHO05D006779 1.5e-64 251.1 321 57.9
Dinv20536 Davidia involucrata HOM05D005481 ORTHO05D006779 1.5e-64 251.1 312 60.6
Actinidia37496 Actinidia chinensis HOM05D005481 ORTHO05D006779 1.9e-64 250.8 339 54.0
Cc11_g05700 Coffea canephora HOM05D005481 ORTHO05D006779 3.2e-64 250.0 341 51.3
Gohir.D12G156900 Gossypium hirsutum HOM05D005481 ORTHO05D006779 4.2e-64 249.6 317 59.0
Actinidia20106 Actinidia chinensis HOM05D005481 ORTHO05D006779 5.5e-64 249.2 390 48.2
CARHR060770 Cardamine hirsuta HOM05D005481 ORTHO05D006779 9.4e-64 248.4 313 58.1
MBI19_g01916_MAGBIO Magnolia biondii HOM05D005481 ORTHO05D006779 1.6e-63 247.7 357 56.9
Carub.0002s1458 Capsella rubella HOM05D005481 ORTHO05D006779 3.6e-63 246.5 324 58.0
Atru.chr11.1002 Acer truncatum HOM05D005481 ORTHO05D006779 4.7e-63 246.1 341 56.6
arahy.Tifrunner.gnm1.ann1.31BYXQ Arachis hypogaea HOM05D005481 ORTHO05D006779 4.7e-63 246.1 280 62.5
Sp5g23100 Schrenkiella parvula HOM05D005481 ORTHO05D006779 4.7e-63 246.1 325 57.2
Lalb_Chr07g0187931 Lupinus albus HOM05D005481 ORTHO05D006779 6.1e-63 245.7 318 56.6
FAN22G2365 Fragaria x ananassa HOM05D005481 ORTHO05D006779 8.0e-63 245.4 329 60.5
Gorai.008G169700 Gossypium raimondii HOM05D005481 ORTHO05D006779 8.0e-63 245.4 329 54.7
Prupe.1G338200 Prunus persica HOM05D005481 ORTHO05D006779 1.0e-62 245.0 322 56.5
AL2G26810 Arabidopsis lyrata HOM05D005481 ORTHO05D006779 1.8e-62 244.2 317 55.8
C06p41930 Brassica napus HOM05D005481 ORTHO05D006779 2.3e-62 243.8 336 57.4
CDE05G2094 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 2.3e-62 243.8 276 59.1
Hma1.2p1_0095F.1_g047500 Hydrangea macrophylla HOM05D005481 ORTHO05D006779 2.3e-62 243.8 313 57.8
ECA234G1527 Erigeron canadensis HOM05D005481 ORTHO05D006779 1.2e-61 241.5 317 58.7
A07p32160 Brassica napus HOM05D005481 ORTHO05D006779 2.0e-61 240.7 325 54.8
BraA07t30846Z Brassica rapa HOM05D005481 ORTHO05D006779 2.0e-61 240.7 325 54.8
Phvul.002G184200 Phaseolus vulgaris HOM05D005481 ORTHO05D006779 3.3e-61 240.0 311 57.6
Aa31LG9G8490 Aethionema arabicum HOM05D005481 ORTHO05D006779 5.7e-61 239.2 324 59.6
AT1G68100 Arabidopsis thaliana HOM05D005481 ORTHO05D006779 5.7e-61 239.2 324 55.9
Thhalv10018501m.g Eutrema salsugineum HOM05D005481 ORTHO05D006779 5.7e-61 239.2 330 55.8
unitig_22.g5612 Utricularia gibba HOM05D005481 ORTHO05D006779 5.7e-61 239.2 347 53.0
C06p37930 Brassica napus HOM05D005481 ORTHO05D006779 9.7e-61 238.4 329 56.8
BcaC08g45998 Brassica carinata HOM05D005481 ORTHO05D006779 1.7e-60 237.7 331 57.1
BolC6t38892H Brassica oleracea HOM05D005481 ORTHO05D006779 1.7e-60 237.7 331 57.1
SGA_v2.0_scaffold65G22147 Striga asiatica HOM05D005481 ORTHO05D006779 1.7e-60 237.7 326 54.0
MSTRG.13650 Avicennia marina HOM05D005481 ORTHO05D006779 2.8e-60 236.9 328 50.3
BcaB03g15132 Brassica carinata HOM05D005481 ORTHO05D006779 4.8e-60 236.1 325 54.8
A07p34580 Brassica napus HOM05D005481 ORTHO05D006779 1.8e-59 234.2 324 54.6
BraA07t31076Z Brassica rapa HOM05D005481 ORTHO05D006779 1.8e-59 234.2 324 54.6
THA.LOC104821909 Tarenaya hassleriana HOM05D005481 ORTHO05D006779 3.1e-59 233.4 325 54.8
TWI74G0731 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 3.1e-59 233.4 328 50.9
TAR622G0189 Trochodendron aralioides HOM05D005481 ORTHO05D006779 4.1e-59 233.0 278 61.2
EL10Ac8g18625 Beta vulgaris HOM05D005481 ORTHO05D006779 5.3e-59 232.6 272 59.9
Sc10g0004950 Simmondsia chinensis HOM05D005481 ORTHO05D006779 7.0e-59 232.3 310 50.3
BcaC08g46237 Brassica carinata HOM05D005481 ORTHO05D006779 2.0e-58 230.7 330 56.4
BolC6t39238H Brassica oleracea HOM05D005481 ORTHO05D006779 2.0e-58 230.7 330 56.4
FAN12G2411 Fragaria x ananassa HOM05D005481 ORTHO05D006779 3.6e-55 219.9 330 57.0
Mapoly0096s0003 Marchantia polymorpha HOM05D005481 ORTHO05D006779 1.2e-53 214.9 320 54.1
Mapoly0096s0004 Marchantia polymorpha HOM05D005481 ORTHO05D006779 1.2e-53 214.9 320 54.1
Pp3c12_24640 Physcomitrium patens HOM05D005481 ORTHO05D006779 1.2e-53 214.9 321 51.1
Lsat_1_v5_gn_4_24241 Lactuca sativa HOM05D005481 ORTHO05D006779 2.8e-52 210.3 323 56.3
Nitab4.5_0000926g0040 Nicotiana tabacum HOM05D005481 ORTHO05D006779 2.7e-50 203.8 326 53.7
Rhsim09G0085400 Rhododendron simsii HOM05D005481 ORTHO05D006779 7.7e-50 202.2 401 40.9
Hund03668 Selenicereus undatus HOM05D005481 ORTHO05D006779 3.2e-48 196.8 271 56.5
Duzib251G0084 Durio zibethinus HOM05D005481 ORTHO05D006779 4.2e-48 196.4 323 48.3
Sabra08G0106000 Salix brachista HOM05D005481 ORTHO05D006779 8.0e-47 192.2 352 49.1
SMO164G0085 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 1.8e-46 191.0 310 47.4
AUR62033487 Chenopodium quinoa HOM05D005481 ORTHO05D006779 9.2e-43 178.7 268 45.9
HPP92_005759 Vanilla planifolia HOM05D005481 ORTHO05D006779 9.2e-43 178.7 225 60.0
BcaC08g45996 Brassica carinata HOM05D005481 ORTHO05D006779 1.1e-40 171.8 315 47.6
Dinv20505 Davidia involucrata HOM05D005481 ORTHO05D006779 2.5e-40 170.6 176 73.3
Duzib268G0472 Durio zibethinus HOM05D005481 ORTHO05D006779 2.0e-37 161.0 234 50.0
SMO271G0121 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 5.8e-37 159.5 237 48.1
Haze_10808 Corylus avellana HOM05D005481 ORTHO05D006779 4.9e-36 156.4 320 43.8
CBR_g56846 Chara braunii HOM05D005481 ORTHO05D006779 1.3e-33 148.3 423 40.0
VMungo0251G3144 Vigna mungo HOM05D005481 ORTHO05D000001 3.0e-33 147.1 180 55.0
Ciclev10018249m.g Citrus clementina HOM05D005481 ORTHO05D006779 4.3e-32 143.3 188 55.3
SEGI_33830 Sequoiadendron giganteum HOM05D005481 ORTHO05D006779 4.7e-31 139.8 202 50.5
FAN12G2899 Fragaria x ananassa HOM05D005481 ORTHO05D006779 6.2e-31 139.4 194 52.1
Nitab4.5_0007504g0030 Nicotiana tabacum HOM05D005481 ORTHO05D006779 5.8e-29 132.9 199 52.3
AagrBONN_evm.TU.Sc2ySwM_368.3383 Anthoceros agrestis HOM05D005481 ORTHO05D006779 2.4e-27 127.5 217 50.2
Thecc.02G303600 Theobroma cacao HOM05D005481 ORTHO05D006779 6.0e-26 122.9 180 51.7
VMungo0251G2403 Vigna mungo HOM05D005481 ORTHO05D006779 6.0e-26 122.9 107 59.8
BcaB03g15128 Brassica carinata HOM05D005481 ORTHO05D006779 5.0e-25 119.8 233 51.1
Peaxi162Scf00337g00010 Petunia axillaris HOM05D005481 ORTHO05D006779 1.5e-24 118.2 180 48.9
BcaB03g15129 Brassica carinata HOM05D005481 ORTHO05D006779 1.9e-24 117.9 232 50.9
DCAR_002653 Daucus carota HOM05D005481 ORTHO05D006779 7.3e-24 115.9 202 45.0
Oeu062663.1 Olea europaea HOM05D005481 ORTHO05D006779 6.2e-23 112.8 95 86.3
AUR62011097 Chenopodium quinoa HOM05D005481 ORTHO05D006779 1.4e-22 111.7 238 40.3
TAR374G1742 Trochodendron aralioides HOM05D005481 ORTHO05D006779 1.4e-22 111.7 160 59.4
Cpa.g.sc326.2 Carica papaya HOM05D005481 ORTHO05D006779 2.6e-21 107.5 61 83.6
TAR374G0503 Trochodendron aralioides HOM05D005481 ORTHO05D006779 2.6e-21 107.5 59 86.4
BcaB03g15126 Brassica carinata HOM05D005481 ORTHO05D006779 6.4e-20 102.8 253 46.2
BcaB03g15400 Brassica carinata HOM05D005481 ORTHO05D006779 1.4e-19 101.7 101 57.4
BcaB03g15399 Brassica carinata HOM05D005481 ORTHO05D006779 1.9e-19 101.3 92 81.5
Sc10g0005080 Simmondsia chinensis HOM05D005481 ORTHO05D006779 7.3e-16 89.4 59 74.6
FAN12G0241 Fragaria x ananassa HOM05D005481 ORTHO05D006779 2.8e-15 87.4 90 65.6
MCO07G486 Micromonas commoda HOM05D005481 ORTHO05D006779 8.9e-14 82.4 288 29.2
Ah.09g225960 Amaranthus hybridus HOM05D005481 ORTHO05D006779 1.6e-07 61.6 108 38.0
HanXRQChr16g0527591 Helianthus annuus HOM05D005481 ORTHO05D006779 2.1e-07 61.2 43 67.4
SEGI_02848 Sequoiadendron giganteum HOM05D005481 ORTHO05D006779 1.8e-06 58.2 39 71.8


User provided reference genes

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