Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 0.0e+00 1492.2 799 100.0
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 0.0e+00 1258.0 811 86.1
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 1.9e-283 979.2 847 67.8
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 7.4e-166 588.6 866 46.2
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 2.7e-152 543.5 814 47.5
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 1.6e-149 534.3 863 45.9
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 2.8e-149 533.5 859 44.8
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 2.4e-148 530.4 780 47.4
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 3.1e-148 530.0 874 43.6
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 4.2e-145 519.6 868 43.3
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 3.0e-143 513.5 844 44.0
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 3.9e-143 513.1 846 44.8
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 3.3e-142 510.0 828 42.4
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 1.6e-141 507.7 750 47.2
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 6.3e-141 505.8 896 42.3
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 1.1e-140 505.0 851 43.0
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.4e-140 504.6 871 43.2
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 3.1e-140 503.4 857 42.9
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 9.0e-140 501.9 837 44.0
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 2.0e-139 500.7 855 44.3
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 2.2e-138 497.3 856 42.5
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 2.9e-138 496.9 857 43.4
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 1.1e-137 495.0 823 42.6
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 3.6e-136 490.0 840 42.0
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 1.0e-135 488.4 850 42.4
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 1.0e-135 488.4 850 42.1
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.8e-135 487.6 752 46.5
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 1.8e-135 487.6 837 42.8
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 1.8e-135 487.6 847 41.7
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 2.3e-135 487.3 866 41.9
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 2.6e-134 483.8 756 44.8
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 9.7e-134 481.9 849 41.5
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 1.1e-132 478.4 875 40.8
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 1.8e-132 477.6 750 44.8
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 1.8e-132 477.6 851 42.9
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 4.1e-132 476.5 851 41.7
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 4.1e-132 476.5 755 44.1
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 1.2e-131 474.9 861 40.5
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 2.0e-131 474.2 853 41.5
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 2.6e-131 473.8 829 40.9
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 7.7e-131 472.2 875 42.1
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 1.7e-130 471.1 846 41.5
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 6.5e-130 469.2 859 41.0
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 1.1e-129 468.4 851 40.7
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 1.9e-129 467.6 883 41.0
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 1.6e-128 464.5 830 41.7
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 1.6e-128 464.5 848 41.7
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 2.1e-128 464.2 795 41.9
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 1.0e-127 461.8 922 38.4
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 6.7e-127 459.1 876 39.3
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 6.7e-127 459.1 835 41.3
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 1.5e-126 458.0 808 40.5
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 1.8e-124 451.1 825 42.2
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 2.4e-124 450.7 830 41.3
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 5.3e-124 449.5 873 40.2
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 2.6e-123 447.2 878 40.8
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 3.8e-122 443.4 857 39.0
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 6.5e-122 442.6 826 40.4
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 1.5e-121 441.4 861 40.3
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 3.2e-121 440.3 879 39.8
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 9.4e-121 438.7 854 40.4
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 1.2e-120 438.3 828 41.5
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 1.2e-120 438.3 845 39.4
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 1.6e-120 438.0 843 39.7
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 2.1e-120 437.6 847 40.0
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.0e-119 435.3 847 40.1
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 1.4e-119 434.9 865 40.8
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 1.8e-119 434.5 772 41.7
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 4.0e-119 433.3 843 40.1
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 3.3e-118 430.3 839 40.4
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 2.8e-117 427.2 802 41.8
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 3.7e-117 426.8 776 42.7
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 6.3e-117 426.0 858 40.7
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 1.4e-116 424.9 816 40.0
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 2.4e-116 424.1 857 38.9
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 3.1e-116 423.7 853 39.5
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 3.1e-116 423.7 817 39.3
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 4.1e-116 423.3 882 40.1
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 5.3e-116 422.9 836 39.0
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 7.0e-116 422.5 773 41.8
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 1.6e-115 421.4 729 42.1
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 1.3e-114 418.3 753 41.7
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 3.8e-114 416.8 773 40.1
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 3.2e-113 413.7 767 39.8
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 2.1e-112 411.0 848 39.3
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 8.0e-112 409.1 742 39.6
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 8.8e-111 405.6 856 39.1
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 2.0e-110 404.4 768 40.1
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 3.4e-110 403.7 793 38.5
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 5.7e-110 402.9 856 38.7
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 9.8e-110 402.1 861 38.0
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.8e-109 400.6 848 39.0
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 8.3e-109 399.1 724 41.2
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 1.4e-108 398.3 793 39.6
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.4e-108 398.3 843 38.9
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 7.0e-108 396.0 722 40.6
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 7.7e-107 392.5 825 37.8
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 1.0e-106 392.1 802 40.5
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 1.5e-105 388.3 720 41.1
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 7.2e-105 386.0 778 38.7
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 1.6e-104 384.8 766 39.7
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 2.1e-104 384.4 745 39.7
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 2.3e-103 380.9 633 43.0
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 3.0e-103 380.6 894 37.0
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 8.8e-103 379.0 851 38.2
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 1.7e-101 374.8 746 38.7
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 4.9e-101 373.2 855 36.7
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 6.3e-101 372.9 851 37.8
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.8e-100 371.3 857 37.6
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.6e-99 368.2 859 37.4
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 3.5e-99 367.1 728 42.0
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 1.3e-98 365.2 746 39.0
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 8.6e-98 362.5 718 40.1
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 7.3e-97 359.4 770 37.9
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 9.5e-97 359.0 665 43.0
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 2.3e-95 354.4 834 37.2
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 1.6e-91 341.7 718 38.2
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 2.3e-90 337.8 709 39.4
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 2.1e-88 331.3 725 36.7
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 2.1e-88 331.3 719 36.9
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 2.6e-86 324.3 711 38.1
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 5.4e-84 316.6 646 39.9
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 4.3e-81 307.0 724 34.9
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 1.6e-80 305.1 668 38.9
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 1.8e-79 301.6 714 36.7
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 2.3e-79 301.2 717 36.1
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 1.3e-77 295.4 732 35.5
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 4.9e-77 293.5 721 35.1
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 3.2e-76 290.8 717 34.9
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 6.0e-75 286.6 718 35.1
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 7.3e-73 279.6 654 35.6
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 8.4e-69 266.2 700 34.7
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 4.1e-68 263.8 827 33.0
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 2.7e-67 261.2 704 34.2
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 6.9e-63 246.5 787 32.0
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 2.0e-62 245.0 928 29.8
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 2.0e-62 245.0 306 48.7
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 2.0e-62 245.0 306 48.7
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 2.1e-56 224.9 415 40.7
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 1.6e-51 208.8 650 30.8
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 1.5e-46 192.2 715 28.7
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 1.6e-43 182.2 220 53.2
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 4.8e-40 170.6 327 37.9
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 1.1e-39 169.5 757 28.5
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 1.2e-35 156.0 489 34.6
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 1.8e-34 152.1 660 29.1
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 1.3e-32 146.0 134 59.7
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 1.3e-32 146.0 134 59.7
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 2.8e-32 144.8 117 65.0
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 2.0e-30 138.7 147 52.4
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 1.9e-28 132.1 155 47.1
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 1.8e-26 125.6 203 41.4
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 2.5e-25 121.7 346 33.5
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 2.6e-22 111.7 166 42.8
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 1.8e-18 99.0 77 62.3
arahy.Tifrunner.gnm1.ann1.3V8RAA Arachis hypogaea HOM05D003640 ORTHO05D004439 5.7e-17 94.0 427 30.0
HanXRQChr06g0170111 Helianthus annuus HOM05D003640 ORTHO05D004439 1.4e-15 89.4 97 46.4
HanXRQChr15g0479781 Helianthus annuus HOM05D003640 ORTHO05D004439 2.0e-14 85.5 97 44.3
C09p43560 Brassica napus HOM05D003640 ORTHO05D004439 8.0e-11 73.6 87 49.4
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 8.0e-11 73.6 44 79.5
BolC9t57239H Brassica oleracea HOM05D003640 ORTHO05D004439 3.0e-10 71.6 87 48.3
Dinv35373 Davidia involucrata HOM05D003640 ORTHO05D004439 2.2e-08 65.5 76 55.3
COL.COLO4_06022 Corchorus olitorius HOM05D003057 ORTHO05D003904 8.2e-08 63.5 66 54.5
arahy.Tifrunner.gnm1.ann1.JKFZ9B Arachis hypogaea HOM05D003640 ORTHO05D082470 5.3e-07 60.8 69 49.3


User provided reference genes

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