Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb037350 Zea mays HOM05D005513 ORTHO05D006848 3.7e-174 614.8 308 100.0
Os08g0542600 Oryza sativa ssp. japonica HOM05D005513 ORTHO05D006848 8.9e-152 540.4 306 86.6
Sed0010820 Sechium edule HOM05D005513 ORTHO05D006848 2.7e-124 449.1 298 73.2
ATR0743G005 Amborella trichopoda HOM05D005513 ORTHO05D006848 7.8e-124 447.6 297 71.0
CANSAT56G3287 Cannabis sativa HOM05D005513 ORTHO05D006848 1.7e-123 446.4 311 70.7
Cfa015273 Carpinus fangiana HOM05D005513 ORTHO05D006848 1.7e-123 446.4 298 71.8
Manes.05G132000 Manihot esculenta HOM05D005513 ORTHO05D006848 5.1e-123 444.9 298 70.5
Sed0015185 Sechium edule HOM05D005513 ORTHO05D006848 6.6e-123 444.5 298 71.1
TWI38G0850 Tripterygium wilfordii HOM05D005513 ORTHO05D006848 6.6e-123 444.5 301 70.8
Nn7g37504 Nelumbo nucifera HOM05D005513 ORTHO05D006848 8.6e-123 444.1 298 71.8
CAN.G575.118 Capsicum annuum HOM05D005513 ORTHO05D006848 1.9e-122 443.0 297 72.1
Medtr4g087590 Medicago truncatula HOM05D005513 ORTHO05D006848 2.5e-122 442.6 305 69.8
CAN.G2177.12 Capsicum annuum HOM05D005513 ORTHO05D006848 3.3e-122 442.2 297 72.1
TPR.G23516 Trifolium pratense HOM05D005513 ORTHO05D006848 1.2e-121 440.3 304 69.7
Lalb_Chr16g0384361 Lupinus albus HOM05D005513 ORTHO05D006848 1.6e-121 439.9 300 70.3
PSO675G7310 Papaver somniferum HOM05D005513 ORTHO05D006848 1.6e-121 439.9 307 69.4
CAN.G1579.15 Capsicum annuum HOM05D005513 ORTHO05D006848 2.1e-121 439.5 297 71.7
Potri.019G099100 Populus trichocarpa HOM05D005513 ORTHO05D006848 2.1e-121 439.5 306 70.6
Cc09_g04220 Coffea canephora HOM05D005513 ORTHO05D006848 2.8e-121 439.1 297 70.4
TAR362G0948 Trochodendron aralioides HOM05D005513 ORTHO05D006848 2.8e-121 439.1 297 71.0
CSS0036954 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 3.6e-121 438.7 306 69.0
Cpa.g.sc343.3 Carica papaya HOM05D005513 ORTHO05D006848 3.6e-121 438.7 298 70.8
CiPaw.01G170000 Carya illinoinensis HOM05D005513 ORTHO05D006848 3.6e-121 438.7 304 69.1
AUR62002417 Chenopodium quinoa HOM05D005513 ORTHO05D006848 3.6e-121 438.7 294 71.4
Ca_18624_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 3.6e-121 438.7 303 68.6
vmacro15699 Vaccinium macrocarpon HOM05D005513 ORTHO05D006848 4.7e-121 438.3 317 67.8
Atru.chr4.1482 Acer truncatum HOM05D005513 ORTHO05D006848 6.2e-121 438.0 303 68.6
arahy.Tifrunner.gnm1.ann1.GC3WT6 Arachis hypogaea HOM05D005513 ORTHO05D006848 1.1e-120 437.2 298 70.5
Ciclev10021262m.g Citrus clementina HOM05D005513 ORTHO05D006848 1.1e-120 437.2 300 70.0
arahy.Tifrunner.gnm1.ann1.GWB5D5 Arachis hypogaea HOM05D005513 ORTHO05D006848 1.8e-120 436.4 298 70.8
Phvul.003G059600 Phaseolus vulgaris HOM05D005513 ORTHO05D006848 1.8e-120 436.4 300 70.0
Sabra19G0110200 Salix brachista HOM05D005513 ORTHO05D006848 1.8e-120 436.4 306 69.6
Lj4g0013603 Lotus japonicus HOM05D005513 ORTHO05D006848 3.1e-120 435.6 300 70.0
VMungo0251G3259 Vigna mungo HOM05D005513 ORTHO05D006848 4.0e-120 435.3 307 69.1
Glyma.02G138700 Glycine max HOM05D005513 ORTHO05D006848 5.2e-120 434.9 300 69.3
QL10p057731 Quercus lobata HOM05D005513 ORTHO05D006848 5.2e-120 434.9 311 68.5
SalBow3G2273 Salvia bowleyana HOM05D005513 ORTHO05D006848 6.8e-120 434.5 297 71.4
HPP92_011686 Vanilla planifolia HOM05D005513 ORTHO05D006848 6.8e-120 434.5 298 70.8
PGSC0003DMG400004444 Solanum tuberosum HOM05D005513 ORTHO05D006848 8.9e-120 434.1 298 70.1
RcHm_v2.0_Chr2g0085091 Rosa chinensis HOM05D005513 ORTHO05D006848 1.2e-119 433.7 298 70.5
Nitab4.5_0001936g0090 Nicotiana tabacum HOM05D005513 ORTHO05D006848 2.6e-119 432.6 297 69.0
Aqoxy2G04162 Aquilegia oxysepala HOM05D005513 ORTHO05D006848 3.4e-119 432.2 306 67.0
EL10Ac3g06111 Beta vulgaris HOM05D005513 ORTHO05D006848 3.4e-119 432.2 298 70.5
AUR62023772 Chenopodium quinoa HOM05D005513 ORTHO05D006848 3.4e-119 432.2 294 70.7
Glyma.07G206300 Glycine max HOM05D005513 ORTHO05D006848 3.4e-119 432.2 300 69.0
Sopen12g019010 Solanum pennellii HOM05D005513 ORTHO05D006848 3.4e-119 432.2 298 69.8
HPP92_011691 Vanilla planifolia HOM05D005513 ORTHO05D006848 3.4e-119 432.2 298 70.5
GSVIVG01038190001 Vitis vinifera HOM05D005513 ORTHO05D006848 3.4e-119 432.2 299 69.2
Gohir.D10G121000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 4.4e-119 431.8 300 68.7
Gorai.011G132900 Gossypium raimondii HOM05D005513 ORTHO05D006848 4.4e-119 431.8 300 68.7
PGR042G2305 Punica granatum HOM05D005513 ORTHO05D006848 5.8e-119 431.4 298 70.1
COL.COLO4_08197 Corchorus olitorius HOM05D005513 ORTHO05D006848 7.6e-119 431.0 315 67.0
Prupe.7G267200 Prunus persica HOM05D005513 ORTHO05D006848 9.9e-119 430.6 298 70.8
PSO541G5416 Papaver somniferum HOM05D005513 ORTHO05D006848 1.3e-118 430.3 307 68.4
Psat7g119320 Pisum sativum HOM05D005513 ORTHO05D006848 1.3e-118 430.3 303 68.6
Thecc.04G162400 Theobroma cacao HOM05D005513 ORTHO05D006848 1.3e-118 430.3 299 69.6
Duzib151G0764 Durio zibethinus HOM05D005513 ORTHO05D006848 2.2e-118 429.5 298 69.1
Gohir.A10G146000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 3.8e-118 428.7 300 68.0
Actinidia11441 Actinidia chinensis HOM05D005513 ORTHO05D006848 8.4e-118 427.6 318 66.7
Migut.F01838 Erythranthe guttata HOM05D005513 ORTHO05D006848 8.4e-118 427.6 305 68.2
FAN26G1480 Fragaria x ananassa HOM05D005513 ORTHO05D006848 8.4e-118 427.6 306 68.6
Peaxi162Scf00544g00118 Petunia axillaris HOM05D005513 ORTHO05D006848 8.4e-118 427.6 297 69.4
Atru.chr4.1511 Acer truncatum HOM05D005587 ORTHO05D007287 1.1e-117 427.2 297 68.7
FAN23G0174 Fragaria x ananassa HOM05D005513 ORTHO05D006848 1.9e-117 426.4 306 68.6
RhsimUnG0015400 Rhododendron simsii HOM05D005513 ORTHO05D006848 4.1e-117 425.2 340 62.6
CAN.G575.103 Capsicum annuum HOM05D005513 ORTHO05D006848 1.2e-116 423.7 297 69.4
MSTRG.8188 Avicennia marina HOM05D005513 ORTHO05D006848 1.6e-116 423.3 297 68.4
Nitab4.5_0008882g0020 Nicotiana tabacum HOM05D005513 ORTHO05D006848 2.1e-116 422.9 297 67.3
CsaV3_6G032350 Cucumis sativus L. HOM05D005513 ORTHO05D006848 2.7e-116 422.5 298 70.1
FvH4_1g00490 Fragaria vesca HOM05D005513 ORTHO05D006848 6.0e-116 421.4 306 68.0
Aa31LG3G16700 Aethionema arabicum HOM05D005513 ORTHO05D006848 7.8e-116 421.0 301 67.4
Hund12358 Selenicereus undatus HOM05D005513 ORTHO05D006848 7.8e-116 421.0 304 66.8
CSS0028849 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 1.0e-115 420.6 280 72.1
QL10p057421 Quercus lobata HOM05D005513 ORTHO05D006848 1.0e-115 420.6 281 71.9
Oeu057533.3 Olea europaea HOM05D005513 ORTHO05D006848 3.0e-115 419.1 340 61.5
Atru.BG.100.p Acer truncatum HOM05D005513 ORTHO05D006848 3.9e-115 418.7 281 71.2
Ca_18630_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 5.1e-115 418.3 279 71.3
Eucgr.L00024 Eucalyptus grandis HOM05D005513 ORTHO05D006848 6.6e-115 417.9 306 67.3
THA.LOC104801693 Tarenaya hassleriana HOM05D005513 ORTHO05D006848 8.7e-115 417.5 301 64.8
HanXRQChr10g0285921 Helianthus annuus HOM05D005513 ORTHO05D006848 3.3e-114 415.6 292 69.2
Rhsim02G0085900 Rhododendron simsii HOM05D005513 ORTHO05D006848 1.6e-113 413.3 358 59.5
Peaxi162Scf00544g00117 Petunia axillaris HOM05D005513 ORTHO05D006848 2.1e-113 412.9 297 67.7
FAN28G1408 Fragaria x ananassa HOM05D005513 ORTHO05D006848 2.8e-113 412.5 326 64.1
AL6G20970 Arabidopsis lyrata HOM05D005513 ORTHO05D006848 3.6e-113 412.1 301 65.8
CAN.G2107.3 Capsicum annuum HOM05D005513 ORTHO05D006848 4.7e-113 411.8 289 70.2
Lsat_1_v5_gn_2_40261 Lactuca sativa HOM05D005513 ORTHO05D006848 6.2e-113 411.4 319 65.2
CARHR202830 Cardamine hirsuta HOM05D005513 ORTHO05D006848 1.1e-112 410.6 293 67.9
ECA238G0802 Erigeron canadensis HOM05D005513 ORTHO05D006848 1.8e-112 409.8 288 69.4
BcaB05g21485 Brassica carinata HOM05D005513 ORTHO05D006848 3.1e-112 409.1 303 66.0
C02p04480 Brassica napus HOM05D005513 ORTHO05D006848 3.1e-112 409.1 303 66.0
MD15G1148400 Malus domestica HOM05D005513 ORTHO05D006848 5.2e-112 408.3 280 72.5
Sp6g32980 Schrenkiella parvula HOM05D005513 ORTHO05D006848 1.2e-111 407.1 302 64.9
A02p00500 Brassica napus HOM05D005513 ORTHO05D006848 1.5e-111 406.8 303 65.7
BolC2t06408H Brassica oleracea HOM05D005513 ORTHO05D006848 1.5e-111 406.8 303 65.7
AT5G10460 Arabidopsis thaliana HOM05D005513 ORTHO05D006848 2.0e-111 406.4 292 66.8
BraA02t05034Z Brassica rapa HOM05D005513 ORTHO05D006848 4.4e-111 405.2 303 65.0
Carub.0006s0894 Capsella rubella HOM05D005513 ORTHO05D006848 6.4e-110 401.4 293 66.6
MELO3C011447.2 Cucumis melo HOM05D005513 ORTHO05D006848 6.4e-110 401.4 342 60.8
Thhalv10014198m.g Eutrema salsugineum HOM05D005513 ORTHO05D006848 1.4e-109 400.2 302 63.2
Eucgr.G01603 Eucalyptus grandis HOM05D005513 ORTHO05D006848 2.7e-108 396.0 306 65.4
SEGI_26385 Sequoiadendron giganteum HOM05D005513 ORTHO05D006848 6.0e-108 394.8 299 61.9
Lj6A199G41 Lonicera japonica HOM05D005513 ORTHO05D006848 1.9e-106 389.8 283 68.2
BcaC03g13313 Brassica carinata HOM05D005513 ORTHO05D006848 2.5e-106 389.4 303 63.4
Dinv33223 Davidia involucrata HOM05D005513 ORTHO05D006848 5.8e-103 378.3 247 72.5
SGA_v2.0_scaffold122G33215 Striga asiatica HOM05D005513 ORTHO05D006848 6.7e-99 364.8 277 65.3
ClCG08G010170 Citrullus lanatus HOM05D005513 ORTHO05D006848 3.3e-98 362.5 298 62.8
SMO119G0305 Selaginella moellendorffii HOM05D005513 ORTHO05D006848 1.6e-97 360.1 298 57.4
Sc19g0006410 Simmondsia chinensis HOM05D005513 ORTHO05D006848 2.1e-97 359.8 247 68.8
Solyc12g038820.1 Solanum lycopersicum HOM05D005513 ORTHO05D006848 1.4e-96 357.1 248 69.0
CAN.G575.78 Capsicum annuum HOM05D005513 ORTHO05D006848 6.9e-96 354.8 247 68.8
CAN.G2075.11 Capsicum annuum HOM05D005513 ORTHO05D006848 1.3e-94 350.5 297 60.6
Nitab4.5_0002604g0050 Nicotiana tabacum HOM05D005513 ORTHO05D006848 6.0e-92 341.7 254 66.5
Nitab4.5_0000241g0250 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.4e-88 330.5 254 65.4
DCAR_005450 Daucus carota HOM05D005513 ORTHO05D006848 1.6e-81 307.0 206 71.8
Haze_01354 Corylus avellana HOM05D005513 ORTHO05D006848 1.1e-80 304.3 203 71.4
CAN.G2075.13 Capsicum annuum HOM05D005513 ORTHO05D006848 1.8e-75 287.0 235 62.6
Lj6A58T47 Lonicera japonica HOM05D005513 ORTHO05D006848 3.4e-71 272.7 213 63.8
MCO04G248 Micromonas commoda HOM05D005513 ORTHO05D006848 4.7e-68 262.3 342 43.6
Medtr4g087600 Medicago truncatula HOM05D005513 ORTHO05D006848 5.1e-67 258.8 208 61.5
CAN.G181.20 Capsicum annuum HOM05D005513 ORTHO05D006848 3.3e-66 256.1 188 67.6
AUR62021707 Chenopodium quinoa HOM05D005513 ORTHO05D006848 7.4e-66 255.0 184 67.4
PRCOL_00005454 Prasinoderma coloniale HOM05D005513 ORTHO05D006848 6.7e-59 231.9 270 47.0
Cre14.g609300 Chlamydomonas reinhardtii HOM05D005513 ORTHO05D006848 1.2e-50 204.5 365 37.3
CAN.G1565.3 Capsicum annuum HOM05D005513 ORTHO05D006848 2.8e-49 199.9 297 40.1
Gorai.004G148900 Gossypium raimondii HOM05D005513 ORTHO05D006848 2.8e-49 199.9 153 65.4
Lj6A193T36 Lonicera japonica HOM05D005513 ORTHO05D006848 4.1e-48 196.1 178 60.7
CAN.G1703.16 Capsicum annuum HOM05D005513 ORTHO05D006848 1.0e-46 191.4 142 67.6
SHI25989 Sapria himalayana HOM05D000105 ORTHO05D000023 8.0e-44 181.8 170 53.5
Cc00_g04390 Coffea canephora HOM05D005513 ORTHO05D006848 1.2e-34 151.4 106 62.3
Lj6A58T48 Lonicera japonica HOM05D005513 ORTHO05D006848 1.2e-34 151.4 135 57.8
Lj6A203T27 Lonicera japonica HOM05D005513 ORTHO05D006848 3.7e-33 146.4 100 69.0
CAN.G1703.15 Capsicum annuum HOM05D005513 ORTHO05D006848 3.6e-28 129.8 88 68.2
CAN.G12630.1 Capsicum annuum HOM05D005513 ORTHO05D006848 5.4e-24 115.9 76 69.7
Lj6A203G20 Lonicera japonica HOM05D005513 ORTHO05D006848 9.5e-21 105.1 176 37.5
EL10Ac7g16782 Beta vulgaris HOM05D005513 ORTHO05D006848 1.8e-19 100.9 67 74.6
Lj6C203G2 Lonicera japonica HOM05D005513 ORTHO05D006848 2.9e-17 93.6 76 61.8
RcHm_v2.0_Chr2g0085051 Rosa chinensis HOM05D005513 ORTHO05D343180 4.6e-15 86.3 82 52.4
SHI25988 Sapria himalayana HOM05D000105 ORTHO05D000023 5.6e-13 79.3 83 49.4
Lj6A192T18 Lonicera japonica HOM05D005513 ORTHO05D006848 5.2e-11 72.8 55 60.0
Lj6A230T44 Lonicera japonica HOM05D005513 ORTHO05D006848 1.2e-10 71.6 53 69.8
SHI25987 Sapria himalayana HOM05D005513 ORTHO05D006848 8.6e-06 55.5 39 59.0


User provided reference genes

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