Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb037230 Zea mays HOM05D005615 ORTHO05D007558 3.5e-211 738.0 378 100.0
Os08g0540100 Oryza sativa ssp. japonica HOM05D005615 ORTHO05D007558 6.5e-189 664.1 386 90.2
Oeu018049.1 Olea europaea HOM05D005615 ORTHO05D007558 4.1e-175 618.2 379 82.6
BraA05t19360Z Brassica rapa HOM05D005615 ORTHO05D007558 2.0e-174 615.9 379 82.8
BcaC02g12407 Brassica carinata HOM05D005615 ORTHO05D007558 1.7e-173 612.8 379 82.6
A05p03730 Brassica napus HOM05D005615 ORTHO05D007558 1.7e-173 612.8 379 82.3
Carub.0004s2582 Capsella rubella HOM05D005615 ORTHO05D007558 2.9e-173 612.1 383 81.2
Atru.chr3.1563 Acer truncatum HOM05D005615 ORTHO05D007558 6.5e-173 610.9 366 82.2
Atru.chr3.1585 Acer truncatum HOM05D005615 ORTHO05D007558 6.5e-173 610.9 366 82.2
C04p04420 Brassica napus HOM05D005615 ORTHO05D007558 6.5e-173 610.9 379 82.1
AL4G42040 Arabidopsis lyrata HOM05D005615 ORTHO05D007558 8.5e-173 610.5 366 82.8
BcaB01g03390 Brassica carinata HOM05D005615 ORTHO05D007558 8.5e-173 610.5 382 80.9
A03p24210 Brassica napus HOM05D005615 ORTHO05D007558 1.1e-172 610.1 383 81.2
BraA03t11630Z Brassica rapa HOM05D005615 ORTHO05D007558 1.1e-172 610.1 383 81.2
AT2G43360 Arabidopsis thaliana HOM05D005615 ORTHO05D007558 1.5e-172 609.8 381 80.3
CARHR138440 Cardamine hirsuta HOM05D005615 ORTHO05D007558 1.5e-172 609.8 379 81.3
GSVIVG01010734001 Vitis vinifera HOM05D005615 ORTHO05D007558 1.5e-172 609.8 381 81.1
BolC4t22075H Brassica oleracea HOM05D005615 ORTHO05D007558 1.9e-172 609.4 379 81.8
Aqoxy2G04109 Aquilegia oxysepala HOM05D005615 ORTHO05D007558 2.5e-172 609.0 354 85.3
Thecc.05G003200 Theobroma cacao HOM05D005615 ORTHO05D007558 7.2e-172 607.4 352 84.9
TAR362G0587 Trochodendron aralioides HOM05D005615 ORTHO05D007558 7.2e-172 607.4 374 82.1
Sp4g25460 Schrenkiella parvula HOM05D005615 ORTHO05D007558 1.2e-171 606.7 379 81.0
Nn7g37651 Nelumbo nucifera HOM05D005615 ORTHO05D007558 1.6e-171 606.3 357 83.8
Potri.007G126400 Populus trichocarpa HOM05D005615 ORTHO05D007558 2.1e-171 605.9 352 84.9
THA.LOC104803617 Tarenaya hassleriana HOM05D005615 ORTHO05D007558 2.1e-171 605.9 368 82.3
Aa31LG1G25060 Aethionema arabicum HOM05D005615 ORTHO05D007558 4.7e-171 604.7 379 80.7
Duzib093G1513 Durio zibethinus HOM05D005615 ORTHO05D007558 1.0e-170 603.6 352 84.4
Nitab4.5_0002368g0110 Nicotiana tabacum HOM05D005615 ORTHO05D007558 1.4e-170 603.2 345 84.3
Actinidia34618 Actinidia chinensis HOM05D005615 ORTHO05D007558 5.2e-170 601.3 382 78.8
CsaV3_6G003770 Cucumis sativus L. HOM05D005615 ORTHO05D007558 5.2e-170 601.3 386 80.1
Thhalv10001495m.g Eutrema salsugineum HOM05D005615 ORTHO05D007558 5.2e-170 601.3 382 79.8
Lj3g0021315 Lotus japonicus HOM05D005615 ORTHO05D007558 5.2e-170 601.3 352 83.0
Dinv44241 Davidia involucrata HOM05D005615 ORTHO05D007558 6.8e-170 600.9 383 79.4
SGA_v2.0_scaffold283G46961 Striga asiatica HOM05D005615 ORTHO05D007558 6.8e-170 600.9 368 83.4
Lalb_Chr01g0001081 Lupinus albus HOM05D005615 ORTHO05D007558 8.8e-170 600.5 352 82.7
MSTRG.22029 Avicennia marina HOM05D005615 ORTHO05D007558 1.2e-169 600.1 355 83.9
HanXRQChr14g0434901 Helianthus annuus HOM05D005615 ORTHO05D007558 1.2e-169 600.1 364 81.9
Psat7g172600 Pisum sativum HOM05D005615 ORTHO05D007558 1.2e-169 600.1 352 83.0
Sabra07G0102500 Salix brachista HOM05D005615 ORTHO05D007558 1.2e-169 600.1 352 84.4
VMungo1127G1033 Vigna mungo HOM05D005615 ORTHO05D007558 1.5e-169 599.7 357 82.6
Ca_26061_v3 Cicer arietinum L. HOM05D005615 ORTHO05D007558 2.0e-169 599.4 336 85.4
Solyc06g073470.3 Solanum lycopersicum HOM05D005615 ORTHO05D007558 2.0e-169 599.4 358 81.8
Sopen06g029830 Solanum pennellii HOM05D005615 ORTHO05D007558 2.0e-169 599.4 358 81.8
PGSC0003DMG400026904 Solanum tuberosum HOM05D005615 ORTHO05D007558 2.0e-169 599.4 358 82.1
TPR.G13757 Trifolium pratense HOM05D005615 ORTHO05D007558 2.0e-169 599.4 336 85.1
CANSAT78G0163 Cannabis sativa HOM05D005615 ORTHO05D007558 2.6e-169 599.0 352 83.8
Cfa015769 Carpinus fangiana HOM05D005615 ORTHO05D007558 2.6e-169 599.0 355 83.1
ClCG08G004320 Citrullus lanatus HOM05D005615 ORTHO05D007558 2.6e-169 599.0 386 79.3
Glyma.11G094200 Glycine max HOM05D005615 ORTHO05D007558 2.6e-169 599.0 357 82.6
QL10p047743 Quercus lobata HOM05D005615 ORTHO05D007558 2.6e-169 599.0 352 84.1
Rhsim09G0030100 Rhododendron simsii HOM05D005615 ORTHO05D007558 2.6e-169 599.0 367 80.9
Glyma.12G020600 Glycine max HOM05D005615 ORTHO05D007558 3.4e-169 598.6 342 84.5
Lalb_Chr03g0024511 Lupinus albus HOM05D005615 ORTHO05D007558 3.4e-169 598.6 352 83.0
Nitab4.5_0010690g0020 Nicotiana tabacum HOM05D005615 ORTHO05D007558 3.4e-169 598.6 345 83.5
Sabra17G0020900 Salix brachista HOM05D005615 ORTHO05D007558 7.5e-169 597.4 352 83.2
Dinv22646 Davidia involucrata HOM05D005615 ORTHO05D007558 9.8e-169 597.0 377 79.6
Manes.04G040500 Manihot esculenta HOM05D005615 ORTHO05D007558 9.8e-169 597.0 372 80.4
RcHm_v2.0_Chr4g0408131 Rosa chinensis HOM05D005615 ORTHO05D007558 1.3e-168 596.7 377 79.3
AUR62016250 Chenopodium quinoa HOM05D005615 ORTHO05D007558 1.7e-168 596.3 340 83.8
Cc03_g13240 Coffea canephora HOM05D005615 ORTHO05D007558 1.7e-168 596.3 368 81.8
Lsat_1_v5_gn_2_52041 Lactuca sativa HOM05D005615 ORTHO05D007558 1.7e-168 596.3 365 80.8
Potri.017G033300 Populus trichocarpa HOM05D005615 ORTHO05D007558 1.7e-168 596.3 352 83.2
Medtr4g076870 Medicago truncatula HOM05D005615 ORTHO05D007558 2.2e-168 595.9 352 81.8
AUR62034151 Chenopodium quinoa HOM05D005615 ORTHO05D007558 3.7e-168 595.1 374 78.6
CiPaw.02G056100 Carya illinoinensis HOM05D005615 ORTHO05D007558 4.9e-168 594.7 344 83.7
ECA238G2991 Erigeron canadensis HOM05D005615 ORTHO05D007558 4.9e-168 594.7 365 81.4
PGR083G0205 Punica granatum HOM05D005615 ORTHO05D007558 4.9e-168 594.7 384 79.2
Gohir.D01G221300 Gossypium hirsutum HOM05D005615 ORTHO05D007558 6.3e-168 594.3 341 85.0
Gorai.002G267900 Gossypium raimondii HOM05D005615 ORTHO05D007558 6.3e-168 594.3 341 85.0
PSO675G8272 Papaver somniferum HOM05D005615 ORTHO05D007558 6.3e-168 594.3 380 78.4
Phvul.011G023300 Phaseolus vulgaris HOM05D005615 ORTHO05D007558 6.3e-168 594.3 357 81.5
MD04G1037300 Malus domestica HOM05D005615 ORTHO05D007558 8.3e-168 594.0 374 79.7
Sed0015751 Sechium edule HOM05D005615 ORTHO05D007558 8.3e-168 594.0 386 78.0
Haze_00733 Corylus avellana HOM05D005615 ORTHO05D007558 1.4e-167 593.2 361 82.0
arahy.Tifrunner.gnm1.ann1.2A1XYJ Arachis hypogaea HOM05D005615 ORTHO05D007558 1.8e-167 592.8 339 85.0
FAN17G1451 Fragaria x ananassa HOM05D005615 ORTHO05D007558 1.8e-167 592.8 350 82.9
Migut.N03069 Erythranthe guttata HOM05D005615 ORTHO05D007558 2.4e-167 592.4 375 80.3
SEGI_32939 Sequoiadendron giganteum HOM05D005615 ORTHO05D007558 2.4e-167 592.4 341 84.5
Gohir.A01G231200 Gossypium hirsutum HOM05D005615 ORTHO05D007558 3.1e-167 592.0 338 86.1
TWI36G1239 Tripterygium wilfordii HOM05D005615 ORTHO05D007558 5.4e-167 591.3 358 81.8
unitig_736.g22473 Utricularia gibba HOM05D005615 ORTHO05D007558 5.4e-167 591.3 357 81.5
PSO017G2630 Papaver somniferum HOM05D005615 ORTHO05D007558 1.6e-166 589.7 379 77.8
Eucgr.A00054 Eucalyptus grandis HOM05D005615 ORTHO05D007558 2.7e-166 589.0 361 81.2
Ciclev10020553m.g Citrus clementina HOM05D005615 ORTHO05D007558 5.9e-166 587.8 385 78.2
ATR0743G064 Amborella trichopoda HOM05D005615 ORTHO05D007558 7.7e-166 587.4 342 83.6
EL10Ac3g05574 Beta vulgaris HOM05D005615 ORTHO05D007558 7.7e-166 587.4 365 78.1
Hund03143 Selenicereus undatus HOM05D005615 ORTHO05D007558 7.7e-166 587.4 377 78.0
Eucgr.A00256 Eucalyptus grandis HOM05D005615 ORTHO05D007558 1.0e-165 587.0 362 81.2
DCAR_029917 Daucus carota HOM05D005615 ORTHO05D007558 1.3e-165 586.6 329 84.8
MELO3C011628.2 Cucumis melo HOM05D005615 ORTHO05D007558 5.0e-165 584.7 389 77.1
Mapoly0041s0099 Marchantia polymorpha HOM05D005615 ORTHO05D007558 6.6e-165 584.3 368 80.4
Sc13g0007050 Simmondsia chinensis HOM05D005615 ORTHO05D007558 1.9e-164 582.8 346 81.5
CDE07G0588 Ceratophyllum demersum HOM05D005615 ORTHO05D007558 1.2e-163 580.1 365 78.9
Pp3c11_17440 Physcomitrium patens HOM05D005615 ORTHO05D007558 6.4e-160 567.8 354 79.4
arahy.Tifrunner.gnm1.ann1.VQKS2I Arachis hypogaea HOM05D005615 ORTHO05D007558 5.4e-159 564.7 339 82.0
Pp3c1_16250 Physcomitrium patens HOM05D005615 ORTHO05D007558 5.4e-159 564.7 333 82.0
SMO358G0150 Selaginella moellendorffii HOM05D005615 ORTHO05D007558 2.0e-158 562.8 333 80.8
MBI11_g35028_MAGBIO Magnolia biondii HOM05D005615 ORTHO05D007558 1.1e-156 557.0 376 77.4
SGA_v2.0_scaffold12G06187 Striga asiatica HOM05D005615 ORTHO05D007558 6.8e-154 547.7 395 74.7
Lj6A60G37 Lonicera japonica HOM05D005615 ORTHO05D007558 9.8e-153 543.9 313 86.6
AagrBONN_evm.TU.Sc2ySwM_362.1417 Anthoceros agrestis HOM05D003321 ORTHO05D005161 6.0e-150 534.6 325 78.5
BcaC01g05236 Brassica carinata HOM05D005615 ORTHO05D007558 2.5e-148 529.3 387 72.9
Ciclev10024495m.g Citrus clementina HOM05D005615 ORTHO05D007558 7.3e-148 527.7 385 71.9
BolC3t15243H Brassica oleracea HOM05D005615 ORTHO05D007558 3.6e-147 525.4 383 72.6
AagrBONN_evm.TU.Sc2ySwM_344.4725 Anthoceros agrestis HOM05D005615 ORTHO05D007558 7.5e-145 517.7 362 70.2
Ciclev10024062m.g Citrus clementina HOM05D005615 ORTHO05D007558 3.4e-129 465.7 352 68.8
Cpa.g.sc71.17 Carica papaya HOM05D005615 ORTHO05D007558 1.0e-125 454.1 250 86.0
Prupe.1G186700 Prunus persica HOM05D005615 ORTHO05D007558 3.6e-123 445.7 265 83.8
CAN.G65.188 Capsicum annuum HOM05D005615 ORTHO05D007558 2.6e-121 439.5 261 83.9
FvH4_4g11460 Fragaria vesca HOM05D005615 ORTHO05D007558 3.4e-121 439.1 280 77.9
HPP92_002777 Vanilla planifolia HOM05D005615 ORTHO05D007558 3.4e-121 439.1 276 80.4
HPP92_028241 Vanilla planifolia HOM05D005615 ORTHO05D001525 9.9e-113 411.0 326 68.4
Zm00001eb198320 Zea mays HOM05D005615 ORTHO05D007558 7.1e-111 404.8 221 95.0
Cre06.g261150 Chlamydomonas reinhardtii HOM05D005615 ORTHO05D007558 5.3e-106 388.7 334 59.6
MCO13G117 Micromonas commoda HOM05D005615 ORTHO05D007558 1.3e-104 384.0 313 61.0
COL.COLO4_14419 Corchorus olitorius HOM05D005615 ORTHO05D007558 5.1e-101 372.1 216 87.0
FAN07G1681 Fragaria x ananassa HOM05D005615 ORTHO05D007558 7.2e-95 351.7 200 82.5
Peaxi162Scf00375g00079 Petunia axillaris HOM05D005615 ORTHO05D007558 3.6e-94 349.4 225 78.7
Haze_27367 Corylus avellana HOM05D005615 ORTHO05D007558 6.7e-77 292.0 298 49.7
vmacro00603 Vaccinium macrocarpon HOM05D005615 ORTHO05D007558 5.0e-72 275.8 234 61.5
AL3G36550 Arabidopsis lyrata HOM05D005615 ORTHO05D007558 1.3e-56 224.6 121 90.1
CBR_g54828 Chara braunii HOM05D005615 ORTHO05D007558 1.1e-50 204.9 135 68.9
AL4G42060 Arabidopsis lyrata HOM05D005615 ORTHO05D007558 4.1e-50 203.0 208 56.2
Actinidia27060 Actinidia chinensis HOM05D005615 ORTHO05D007558 1.7e-43 181.0 97 87.6
CBR_g54834 Chara braunii HOM05D005615 ORTHO05D007558 1.2e-41 174.9 104 79.8
Cpa.g.sc71.16 Carica papaya HOM05D005615 ORTHO05D007558 6.2e-30 136.0 101 74.3
CBR_g54836 Chara braunii HOM05D005615 ORTHO05D000002 6.8e-29 132.5 104 67.3
Psat3g051440 Pisum sativum HOM05D005615 ORTHO05D031631 8.9e-29 132.1 95 73.7
HPP92_002776 Vanilla planifolia HOM05D005615 ORTHO05D007558 4.9e-27 126.3 86 80.2
CDE04G1318 Ceratophyllum demersum HOM05D005615 ORTHO05D007558 1.1e-23 115.2 76 75.0
Cpa.g.c45785 Carica papaya HOM05D005615 ORTHO05D007558 3.6e-22 110.2 60 85.0
Zm00001eb285620 Zea mays HOM05D001443 ORTHO05D001352 9.9e-20 102.1 75 68.0
SalBow8G4084 Salvia bowleyana HOM05D005615 ORTHO05D007558 1.0e-16 92.0 69 71.0
Eucgr.A00259 Eucalyptus grandis HOM05D005615 ORTHO05D007558 1.7e-16 91.3 70 68.6


User provided reference genes

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