Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb037190 Zea mays HOM05D004940 ORTHO05D007805 1.8e-59 232.3 107 100.0
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 7.3e-45 183.7 83 98.8
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 4.7e-44 181.0 83 95.2
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 4.7e-44 181.0 83 95.2
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 1.1e-43 179.9 83 95.2
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 1.8e-43 179.1 83 95.2
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 1.8e-43 179.1 83 95.2
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 2.4e-43 178.7 95 85.3
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 6.8e-43 177.2 83 92.8
PSO832G4005 Papaver somniferum HOM05D004940 ORTHO05D007805 6.8e-43 177.2 85 91.8
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 8.9e-43 176.8 83 94.0
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 1.2e-42 176.4 83 91.6
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 1.2e-42 176.4 83 91.6
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 1.2e-42 176.4 83 91.6
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 1.5e-42 176.0 83 91.6
MELO3C012862.2 Cucumis melo HOM05D004940 ORTHO05D007805 1.5e-42 176.0 83 92.8
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 1.5e-42 176.0 83 91.6
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 1.5e-42 176.0 83 92.8
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 1.5e-42 176.0 83 92.8
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 1.5e-42 176.0 83 92.8
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.5e-42 176.0 83 92.8
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.5e-42 176.0 83 92.8
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 1.5e-42 176.0 83 94.0
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 1.5e-42 176.0 83 91.6
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 1.5e-42 176.0 83 92.8
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 1.5e-42 176.0 83 91.6
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 2.0e-42 175.6 83 90.4
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 2.0e-42 175.6 83 92.8
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 2.0e-42 175.6 83 92.8
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 2.0e-42 175.6 83 91.6
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 2.6e-42 175.3 83 91.6
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 3.4e-42 174.9 83 90.4
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 3.4e-42 174.9 83 90.4
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 3.4e-42 174.9 83 90.4
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 3.4e-42 174.9 83 90.4
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 3.4e-42 174.9 83 91.6
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 3.4e-42 174.9 83 91.6
PGSC0003DMG401024284 Solanum tuberosum HOM05D004940 ORTHO05D007805 3.4e-42 174.9 91 84.6
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 3.4e-42 174.9 83 91.6
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 3.4e-42 174.9 83 91.6
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 4.4e-42 174.5 83 91.6
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 4.4e-42 174.5 83 90.4
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 4.4e-42 174.5 83 91.6
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 7.6e-42 173.7 83 91.6
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 7.6e-42 173.7 83 91.6
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 7.6e-42 173.7 83 89.2
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 7.6e-42 173.7 83 88.0
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 7.6e-42 173.7 83 90.4
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 7.6e-42 173.7 83 89.2
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 7.6e-42 173.7 83 89.2
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 9.9e-42 173.3 83 91.6
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 9.9e-42 173.3 83 89.2
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 9.9e-42 173.3 83 89.2
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 1.3e-41 172.9 83 90.4
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 1.3e-41 172.9 83 91.6
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 1.7e-41 172.6 83 90.4
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 1.7e-41 172.6 83 90.4
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 1.7e-41 172.6 83 89.2
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 1.7e-41 172.6 83 89.2
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 1.7e-41 172.6 83 91.6
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 1.7e-41 172.6 83 91.6
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 1.7e-41 172.6 83 91.6
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 1.7e-41 172.6 83 89.2
HPP92_012807 Vanilla planifolia HOM05D004940 ORTHO05D007805 1.7e-41 172.6 83 90.4
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 2.2e-41 172.2 83 89.2
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 2.2e-41 172.2 83 89.2
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 2.2e-41 172.2 83 89.2
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 2.2e-41 172.2 83 89.2
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 2.2e-41 172.2 83 89.2
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 2.2e-41 172.2 83 89.2
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 2.2e-41 172.2 83 89.2
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 2.2e-41 172.2 83 89.2
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 2.2e-41 172.2 83 89.2
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 2.2e-41 172.2 83 89.2
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 2.2e-41 172.2 83 89.2
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 2.2e-41 172.2 83 90.4
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 2.2e-41 172.2 83 86.7
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 2.2e-41 172.2 83 89.2
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 2.2e-41 172.2 83 90.4
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 2.2e-41 172.2 83 89.2
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 2.9e-41 171.8 83 89.2
Atru.chr5.1796 Acer truncatum HOM05D004940 ORTHO05D007805 2.9e-41 171.8 83 89.2
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 2.9e-41 171.8 83 89.2
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 2.9e-41 171.8 83 89.2
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 2.9e-41 171.8 83 89.2
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 3.8e-41 171.4 83 88.0
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 4.9e-41 171.0 83 88.0
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 4.9e-41 171.0 83 88.0
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 8.4e-41 170.2 83 88.0
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 1.1e-40 169.9 83 86.7
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 1.4e-40 169.5 83 89.2
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 1.9e-40 169.1 83 88.0
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 7.1e-40 167.2 83 88.0
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 9.2e-40 166.8 83 86.7
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 1.2e-39 166.4 84 86.9
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 1.2e-39 166.4 84 86.9
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 1.2e-39 166.4 84 86.9
SHI09716 Sapria himalayana HOM05D004940 ORTHO05D000023 3.5e-39 164.9 83 85.5
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 4.6e-39 164.5 84 83.3
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 7.8e-39 163.7 83 83.1
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 8.6e-38 160.2 83 85.5
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 1.1e-37 159.8 83 80.7
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 7.3e-37 157.1 83 77.1
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 1.2e-36 156.4 85 80.0
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 2.8e-36 155.2 83 80.7
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 2.8e-36 155.2 83 80.7
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 1.8e-35 152.5 83 77.1
Lsat_1_v5_gn_2_111960 Lactuca sativa HOM05D004940 ORTHO05D007805 1.7e-33 146.0 83 79.5
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 4.9e-33 144.4 65 93.8
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 7.6e-26 120.6 83 72.3
VMungo0251G2796 Vigna mungo HOM05D004940 ORTHO05D007805 1.8e-22 109.4 55 81.8
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 2.8e-20 102.1 49 87.8
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 2.5e-13 79.0 37 91.9
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 1.4e-11 73.2 62 51.6
SMO181G0033 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 1.0e-09 67.0 55 60.0
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 3.8e-09 65.1 36 77.8
MCO05G688 Micromonas commoda HOM05D001762 ORTHO05D001774 1.6e-07 59.7 83 39.8
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 3.5e-07 58.5 40 65.0
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 1.0e-06 57.0 30 83.3


User provided reference genes

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