Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb036570 Zea mays HOM05D004830 ORTHO05D005310 4.5e-85 318.5 251 100.0
Os08g0530500 Oryza sativa ssp. japonica HOM05D004830 ORTHO05D005310 3.7e-39 166.0 244 44.7
MSTRG.11282 Avicennia marina HOM05D004830 ORTHO05D005310 2.7e-21 106.7 232 35.8
Actinidia08868 Actinidia chinensis HOM05D004830 ORTHO05D005310 4.5e-21 105.9 240 34.2
Cfa018828 Carpinus fangiana HOM05D004830 ORTHO05D005310 5.9e-21 105.5 245 34.7
Migut.I00505 Erythranthe guttata HOM05D004830 ORTHO05D005310 1.7e-20 104.0 232 35.3
QL10p003269 Quercus lobata HOM05D004830 ORTHO05D005310 2.3e-20 103.6 238 35.3
QL10p003237 Quercus lobata HOM05D004830 ORTHO05D005310 2.9e-20 103.2 229 34.9
Oeu056012.1 Olea europaea HOM05D004830 ORTHO05D005310 3.8e-20 102.8 235 35.3
TAR622G0015 Trochodendron aralioides HOM05D004830 ORTHO05D005310 8.6e-20 101.7 237 34.6
Rhsim12G0174200 Rhododendron simsii HOM05D004830 ORTHO05D005310 1.9e-19 100.5 245 34.3
CSS0034026 Camellia sinensis var. sinensis HOM05D004830 ORTHO05D005310 5.6e-19 99.0 238 33.2
CiPaw.11G008200 Carya illinoinensis HOM05D004830 ORTHO05D005310 5.6e-19 99.0 245 33.5
Atru.chr9.1044 Acer truncatum HOM05D004830 ORTHO05D005310 7.3e-19 98.6 239 34.3
Ciclev10022323m.g Citrus clementina HOM05D004830 ORTHO05D005310 9.5e-19 98.2 238 33.2
CDE02G3469 Ceratophyllum demersum HOM05D004830 ORTHO05D005310 1.6e-18 97.4 237 33.3
QL10p003210 Quercus lobata HOM05D004830 ORTHO05D005310 2.1e-18 97.1 238 34.0
ATR0332G003 Amborella trichopoda HOM05D004830 ORTHO05D005310 2.8e-18 96.7 232 34.1
Manes.14G051600 Manihot esculenta HOM05D004830 ORTHO05D005310 2.8e-18 96.7 230 33.9
ATR0561G210 Amborella trichopoda HOM05D004830 ORTHO05D005310 3.6e-18 96.3 232 34.5
Potri.012G097200 Populus trichocarpa HOM05D004830 ORTHO05D005310 8.0e-18 95.1 244 34.0
Ca_24504_v3 Cicer arietinum L. HOM05D004830 ORTHO05D005310 1.4e-17 94.4 226 34.1
Thecc.03G128400 Theobroma cacao HOM05D004830 ORTHO05D005310 1.8e-17 94.0 231 33.3
arahy.Tifrunner.gnm1.ann1.CC2DBD Arachis hypogaea HOM05D004830 ORTHO05D005310 3.0e-17 93.2 230 33.0
COL.COLO4_28101 Corchorus olitorius HOM05D004830 ORTHO05D005310 3.0e-17 93.2 229 33.6
Lj1g0026153 Lotus japonicus HOM05D004830 ORTHO05D005310 3.0e-17 93.2 229 33.2
Lj5A97T92 Lonicera japonica HOM05D004830 ORTHO05D005310 6.8e-17 92.0 231 32.9
RcHm_v2.0_Chr7g0190301 Rosa chinensis HOM05D004830 ORTHO05D005310 8.9e-17 91.7 240 32.5
arahy.Tifrunner.gnm1.ann1.228PAQ Arachis hypogaea HOM05D004830 ORTHO05D005310 1.2e-16 91.3 230 33.0
Duzib084G0035 Durio zibethinus HOM05D004830 ORTHO05D005310 1.2e-16 91.3 234 32.1
MD06G1142500 Malus domestica HOM05D004830 ORTHO05D005310 1.2e-16 91.3 238 32.4
VMungo1309G0155 Vigna mungo HOM05D004830 ORTHO05D005310 1.5e-16 90.9 229 33.2
Aqoxy5G03391 Aquilegia oxysepala HOM05D004830 ORTHO05D005310 2.0e-16 90.5 229 34.1
Aqoxy7G00964 Aquilegia oxysepala HOM05D004830 ORTHO05D005310 2.0e-16 90.5 229 34.1
Cpa.g.sc13.124 Carica papaya HOM05D004830 ORTHO05D005310 2.0e-16 90.5 228 32.9
Glyma.06G170600 Glycine max HOM05D004830 ORTHO05D005310 2.6e-16 90.1 240 33.3
GSVIVG01008536001 Vitis vinifera HOM05D004830 ORTHO05D005310 2.6e-16 90.1 237 33.3
Prupe.5G151800 Prunus persica HOM05D004830 ORTHO05D005310 3.4e-16 89.7 239 31.8
Medtr3g089170 Medicago truncatula HOM05D004830 ORTHO05D005310 4.4e-16 89.4 228 32.5
Phvul.009G166700 Phaseolus vulgaris HOM05D004830 ORTHO05D005310 9.8e-16 88.2 237 32.9
Glyma.04G195400 Glycine max HOM05D004830 ORTHO05D005310 1.7e-15 87.4 237 31.6
Gohir.A03G052400 Gossypium hirsutum HOM05D004830 ORTHO05D005310 1.7e-15 87.4 231 32.0
Haze_07222 Corylus avellana HOM05D004830 ORTHO05D005310 6.4e-15 85.5 58 72.4
Gorai.003G121000 Gossypium raimondii HOM05D004830 ORTHO05D005310 8.3e-15 85.1 231 32.0
MBI13_g01839_MAGBIO Magnolia biondii HOM05D004830 ORTHO05D005310 1.4e-14 84.3 186 34.4
Nitab4.5_0002855g0030 Nicotiana tabacum HOM05D004830 ORTHO05D005310 1.8e-14 84.0 237 32.1
Eucgr.K02732 Eucalyptus grandis HOM05D004830 ORTHO05D005310 2.4e-14 83.6 229 33.6
Lalb_Chr11g0069591 Lupinus albus HOM05D004830 ORTHO05D005310 2.4e-14 83.6 237 32.1
Peaxi162Scf00536g00113 Petunia axillaris HOM05D004830 ORTHO05D005310 2.4e-14 83.6 225 31.6
MBI11_g07465_MAGBIO Magnolia biondii HOM05D004830 ORTHO05D005310 4.1e-14 82.8 199 34.2
Lsat_1_v5_gn_4_80120 Lactuca sativa HOM05D004830 ORTHO05D005310 5.4e-14 82.4 226 31.9
unitig_8.g3032 Utricularia gibba HOM05D004830 ORTHO05D005310 7.0e-14 82.0 227 30.4
HanXRQChr09g0273121 Helianthus annuus HOM05D004830 ORTHO05D005310 2.0e-13 80.5 155 36.1
PSO063G3292 Papaver somniferum HOM05D004830 ORTHO05D005310 2.0e-13 80.5 233 31.8
PSO782G4089 Papaver somniferum HOM05D004830 ORTHO05D005310 2.0e-13 80.5 233 31.8
PGR044G2645 Punica granatum HOM05D004830 ORTHO05D005310 7.8e-13 78.6 238 30.3
vmacro16674 Vaccinium macrocarpon HOM05D004830 ORTHO05D005310 1.7e-12 77.4 207 32.4
Cc00_g11930 Coffea canephora HOM05D004830 ORTHO05D005310 2.3e-12 77.0 154 37.0
TPR.G26134 Trifolium pratense HOM05D004830 ORTHO05D005310 3.0e-12 76.6 57 63.2
Nitab4.5_0002062g0020 Nicotiana tabacum HOM05D004830 ORTHO05D005310 3.9e-12 76.3 224 29.9
ECA232G3637 Erigeron canadensis HOM05D004830 ORTHO05D005310 5.0e-12 75.9 234 29.1
FAN13G1978 Fragaria x ananassa HOM05D004830 ORTHO05D005310 1.1e-11 74.7 241 29.9
FAN18G1516 Fragaria x ananassa HOM05D004830 ORTHO05D005310 3.3e-11 73.2 241 29.9
FvH4_5g08220 Fragaria vesca HOM05D004830 ORTHO05D005310 9.5e-11 71.6 241 29.9
FAN08G1417 Fragaria x ananassa HOM05D004830 ORTHO05D005310 6.2e-10 68.9 241 29.0
SEGI_37187 Sequoiadendron giganteum HOM05D004830 ORTHO05D005310 4.4e-08 62.8 52 55.8
Dinv23140 Davidia involucrata HOM05D004830 ORTHO05D005310 5.4e-06 55.8 103 36.9


User provided reference genes

Program Settings