Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb035810 Zea mays HOM05D005654 ORTHO05D006438 6.9e-99 364.0 187 100.0
Zm00001eb265250 Zea mays HOM05D005654 ORTHO05D006438 4.0e-30 135.6 81 90.1
Zm00001eb414250 Zea mays HOM05D005654 ORTHO05D006438 5.2e-30 135.2 75 94.7
Zm00001eb078300 Zea mays HOM05D000349 ORTHO05D010734 2.0e-26 123.2 80 83.8
Zm00001eb309330 Zea mays HOM05D000349 ORTHO05D006438 2.0e-26 123.2 80 83.8
Zm00001eb324130 Zea mays HOM05D000518 ORTHO05D000737 4.0e-22 109.0 57 93.0
Zm00001eb093520 Zea mays HOM05D005654 ORTHO05D006438 6.8e-22 108.2 62 90.3
Zm00001eb355020 Zea mays HOM05D005654 ORTHO05D006438 2.0e-21 106.7 94 69.1
Os05g0126200 Oryza sativa ssp. japonica HOM05D005654 ORTHO05D006438 2.3e-17 93.2 81 65.4
MSTRG.23266 Avicennia marina HOM05D005654 ORTHO05D006438 7.3e-16 88.2 75 66.7
Migut.H02503 Erythranthe guttata HOM05D005654 ORTHO05D006438 7.3e-16 88.2 81 61.7
ECA248G0981 Erigeron canadensis HOM05D005654 ORTHO05D006438 2.8e-15 86.3 81 60.5
Sed0005955 Sechium edule HOM05D005654 ORTHO05D006438 8.1e-15 84.7 75 65.3
Nn1g05784 Nelumbo nucifera HOM05D005654 ORTHO05D006438 1.4e-14 84.0 81 56.8
SalBow8G3171 Salvia bowleyana HOM05D005654 ORTHO05D006438 4.0e-14 82.4 81 61.7
Dinv33575 Davidia involucrata HOM05D005654 ORTHO05D006438 6.8e-14 81.6 81 58.0
SGA_v2.0_scaffold9G04932 Striga asiatica HOM05D005654 ORTHO05D006438 8.9e-14 81.3 81 59.3
TAR381G0206 Trochodendron aralioides HOM05D005654 ORTHO05D006438 8.9e-14 81.3 81 56.8
Dinv33576 Davidia involucrata HOM05D005654 ORTHO05D006438 1.5e-13 80.5 81 56.8
Lsat_1_v5_gn_9_115780 Lactuca sativa HOM05D005654 ORTHO05D006438 1.5e-13 80.5 81 56.8
QL08p063081 Quercus lobata HOM05D005654 ORTHO05D006438 1.5e-13 80.5 75 58.7
Hma1.2p1_1114F.1_g258780 Hydrangea macrophylla HOM05D005654 ORTHO05D006438 2.6e-13 79.7 81 58.0
Manes.02G099200 Manihot esculenta HOM05D005654 ORTHO05D006438 2.6e-13 79.7 81 59.3
QL06p034798 Quercus lobata HOM05D005654 ORTHO05D006438 2.6e-13 79.7 75 58.7
QL10p007390 Quercus lobata HOM05D005654 ORTHO05D006438 2.6e-13 79.7 75 58.7
Cc07_g10180 Coffea canephora HOM05D005654 ORTHO05D006438 3.4e-13 79.3 75 61.3
CiPaw.08G137200 Carya illinoinensis HOM05D005654 ORTHO05D006438 4.4e-13 79.0 81 58.0
Sed0001903 Sechium edule HOM05D005654 ORTHO05D006438 4.4e-13 79.0 96 53.1
VMungo0331G0515 Vigna mungo HOM05D005654 ORTHO05D006438 4.4e-13 79.0 81 55.6
CAN.G419.13 Capsicum annuum HOM05D005654 ORTHO05D006438 5.8e-13 78.6 81 56.8
Peaxi162Scf00329g00119 Petunia axillaris HOM05D005654 ORTHO05D006438 5.8e-13 78.6 75 60.0
ClCG09G019610 Citrullus lanatus HOM05D005654 ORTHO05D006438 7.6e-13 78.2 81 59.3
Haze_03832 Corylus avellana HOM05D005654 ORTHO05D006438 7.6e-13 78.2 81 55.6
PGR119G1083 Punica granatum HOM05D005654 ORTHO05D006438 7.6e-13 78.2 81 58.0
Sc18g0007030 Simmondsia chinensis HOM05D005654 ORTHO05D006438 7.6e-13 78.2 81 58.0
Solyc04g008800.3 Solanum lycopersicum HOM05D005654 ORTHO05D006438 7.6e-13 78.2 81 56.8
Sopen04g003980 Solanum pennellii HOM05D005654 ORTHO05D006438 7.6e-13 78.2 81 56.8
Glyma.13G002400 Glycine max HOM05D005654 ORTHO05D006438 9.9e-13 77.8 81 54.3
Lj3g0016616 Lotus japonicus HOM05D005654 ORTHO05D006438 9.9e-13 77.8 81 55.6
Oeu035320.1 Olea europaea HOM05D005654 ORTHO05D006438 9.9e-13 77.8 75 57.3
CSS0048601 Camellia sinensis var. sinensis HOM05D005654 ORTHO05D006438 1.3e-12 77.4 81 56.8
Glyma.16G220800 Glycine max HOM05D005654 ORTHO05D006438 1.3e-12 77.4 81 54.3
Nitab4.5_0002707g0030 Nicotiana tabacum HOM05D005654 ORTHO05D006438 1.3e-12 77.4 81 56.8
Nitab4.5_0007445g0010 Nicotiana tabacum HOM05D005654 ORTHO05D006438 1.3e-12 77.4 81 56.8
Phvul.010G058900 Phaseolus vulgaris HOM05D005654 ORTHO05D006438 1.3e-12 77.4 81 54.3
TWI60G0108 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 1.3e-12 77.4 75 57.3
HPP92_013005 Vanilla planifolia HOM05D005654 ORTHO05D006438 1.3e-12 77.4 75 53.3
Glyma.20G066700 Glycine max HOM05D005654 ORTHO05D006438 1.7e-12 77.0 81 54.3
PGSC0003DMG400025306 Solanum tuberosum HOM05D005654 ORTHO05D006438 1.7e-12 77.0 81 55.6
Cfa006918 Carpinus fangiana HOM05D005654 ORTHO05D006438 2.2e-12 76.6 75 56.0
MBI01_g45163_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 2.9e-12 76.3 81 55.6
Manes.01G140500 Manihot esculenta HOM05D005654 ORTHO05D006438 2.9e-12 76.3 75 58.7
Thecc.01G026300 Theobroma cacao HOM05D005654 ORTHO05D006438 3.7e-12 75.9 81 55.6
Actinidia26105 Actinidia chinensis HOM05D005654 ORTHO05D006438 4.9e-12 75.5 81 54.3
Lj2A460T79 Lonicera japonica HOM05D005654 ORTHO05D006438 4.9e-12 75.5 81 53.1
TWI09G1445 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 4.9e-12 75.5 77 57.1
CsaV3_5G027780 Cucumis sativus L. HOM05D005654 ORTHO05D006438 6.4e-12 75.1 81 56.8
Lj5g0021075 Lotus japonicus HOM05D005654 ORTHO05D006438 6.4e-12 75.1 81 51.9
Lalb_Chr06g0172541 Lupinus albus HOM05D005654 ORTHO05D006438 6.4e-12 75.1 81 53.1
Eucgr.H02778 Eucalyptus grandis HOM05D005654 ORTHO05D006438 2.4e-11 73.2 81 55.6
Gohir.A11G179400 Gossypium hirsutum HOM05D005654 ORTHO05D006438 2.4e-11 73.2 81 53.1
Gohir.D11G187100 Gossypium hirsutum HOM05D005654 ORTHO05D006438 2.4e-11 73.2 81 53.1
Gorai.007G199000 Gossypium raimondii HOM05D005654 ORTHO05D006438 2.4e-11 73.2 81 53.1
HanXRQChr10g0278901 Helianthus annuus HOM05D005654 ORTHO05D006438 2.4e-11 73.2 81 51.9
THA.LOC104819191 Tarenaya hassleriana HOM05D005654 ORTHO05D006438 2.4e-11 73.2 81 51.9
GSVIVG01018856001 Vitis vinifera HOM05D005654 ORTHO05D006438 2.4e-11 73.2 81 53.1
Sabra07G0015400 Salix brachista HOM05D005654 ORTHO05D006438 3.2e-11 72.8 81 51.9
COL.COLO4_21992 Corchorus olitorius HOM05D005654 ORTHO05D006438 9.2e-11 71.2 81 54.3
Prupe.8G013400 Prunus persica HOM05D005654 ORTHO05D006438 9.2e-11 71.2 75 53.3
arahy.Tifrunner.gnm1.ann1.I9PPQ0 Arachis hypogaea HOM05D005654 ORTHO05D006438 1.2e-10 70.9 75 53.3
MELO3C005244.2 Cucumis melo HOM05D005654 ORTHO05D006438 1.2e-10 70.9 81 53.1
PSO170G2173 Papaver somniferum HOM05D005654 ORTHO05D006438 1.6e-10 70.5 75 53.3
Ca_14022_v3 Cicer arietinum L. HOM05D005654 ORTHO05D006438 3.5e-10 69.3 81 50.6
PSO339G4156 Papaver somniferum HOM05D005654 ORTHO05D006438 3.5e-10 69.3 75 52.0
Medtr8g077440 Medicago truncatula HOM05D005654 ORTHO05D006438 4.6e-10 68.9 81 50.6
PSO528G0264 Papaver somniferum HOM05D005654 ORTHO05D006438 6.0e-10 68.6 75 53.3
RcHm_v2.0_Chr6g0277811 Rosa chinensis HOM05D005654 ORTHO05D006438 6.0e-10 68.6 75 53.3
arahy.Tifrunner.gnm1.ann1.IV76VY Arachis hypogaea HOM05D005654 ORTHO05D006438 7.8e-10 68.2 75 52.0
CDE04G0601 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 7.8e-10 68.2 77 54.5
FAN07G1349 Fragaria x ananassa HOM05D005654 ORTHO05D006438 7.8e-10 68.2 75 52.0
FAN17G0825 Fragaria x ananassa HOM05D005654 ORTHO05D006438 7.8e-10 68.2 75 52.0
FAN22G0080 Fragaria x ananassa HOM05D005654 ORTHO05D006438 7.8e-10 68.2 75 52.0
Aqoxy6G01210 Aquilegia oxysepala HOM05D005654 ORTHO05D006438 1.0e-09 67.8 75 53.3
MD05G1010700 Malus domestica HOM05D005654 ORTHO05D006438 1.3e-09 67.4 75 53.3
Thhalv10010748m.g Eutrema salsugineum HOM05D005654 ORTHO05D006438 1.7e-09 67.0 75 52.0
Sp5g11200 Schrenkiella parvula HOM05D005654 ORTHO05D006438 1.7e-09 67.0 75 52.0
AL5G31430 Arabidopsis lyrata HOM05D005654 ORTHO05D006438 2.3e-09 66.6 75 50.7
AT3G51010 Arabidopsis thaliana HOM05D005654 ORTHO05D006438 3.0e-09 66.2 75 50.7
A09p44110 Brassica napus HOM05D000363 ORTHO05D006438 3.0e-09 66.2 75 52.0
Carub.0005s1741 Capsella rubella HOM05D005654 ORTHO05D006438 3.0e-09 66.2 75 50.7
CDE12G0226 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 3.0e-09 66.2 77 53.2
BcaNung00403 Brassica carinata HOM05D005654 ORTHO05D006438 3.9e-09 65.9 75 52.0
FvH4_4g16440 Fragaria vesca HOM05D005654 ORTHO05D006438 3.9e-09 65.9 75 50.7
FAN12G4326 Fragaria x ananassa HOM05D005654 ORTHO05D006438 3.9e-09 65.9 75 50.7
BraA03t13914Z Brassica rapa HOM05D000363 ORTHO05D005000 6.6e-09 65.1 75 52.0
BraA09t39870Z Brassica rapa HOM05D005654 ORTHO05D006438 6.6e-09 65.1 75 52.0
FvH4_2g15150 Fragaria vesca HOM05D005654 ORTHO05D006438 6.6e-09 65.1 75 49.3
BcaC06g33063 Brassica carinata HOM05D005654 ORTHO05D006438 8.6e-09 64.7 75 52.0
A03p48070 Brassica napus HOM05D000363 ORTHO05D005000 8.6e-09 64.7 75 52.0
C07p46090 Brassica napus HOM05D000363 ORTHO05D005000 8.6e-09 64.7 75 52.0
BolC7t45125H Brassica oleracea HOM05D000363 ORTHO05D005000 8.6e-09 64.7 75 52.0
CANSAT01G3286 Cannabis sativa HOM05D005654 ORTHO05D006438 1.1e-08 64.3 75 50.7
TPR.G24134 Trifolium pratense HOM05D005654 ORTHO05D006438 1.1e-08 64.3 81 48.1
ATR0605G129 Amborella trichopoda HOM05D005654 ORTHO05D006438 1.5e-08 63.9 81 48.1
BcaC07g39579 Brassica carinata HOM05D005654 ORTHO05D006438 2.5e-08 63.2 75 52.0
C08p26310 Brassica napus HOM05D005654 ORTHO05D006438 2.5e-08 63.2 75 52.0
BolC8t50249H Brassica oleracea HOM05D005654 ORTHO05D006438 2.5e-08 63.2 75 52.0
BcaB01g00554 Brassica carinata HOM05D005654 ORTHO05D006438 3.3e-08 62.8 75 50.7
CARHR160580 Cardamine hirsuta HOM05D005654 ORTHO05D006438 5.6e-08 62.0 77 49.4
MD10G1009400 Malus domestica HOM05D005654 ORTHO05D006438 5.6e-08 62.0 75 52.0
Oeu021744.2 Olea europaea HOM05D005654 ORTHO05D006438 5.6e-08 62.0 130 35.4
Hund00373 Selenicereus undatus HOM05D005654 ORTHO05D006438 7.3e-08 61.6 81 50.6
AUR62012893 Chenopodium quinoa HOM05D005654 ORTHO05D006438 2.1e-07 60.1 81 48.1
Lj4A211T64 Lonicera japonica HOM05D005654 ORTHO05D006438 2.1e-07 60.1 86 45.3
AUR62027117 Chenopodium quinoa HOM05D005654 ORTHO05D006438 3.6e-07 59.3 81 48.1
SGA_v2.0_scaffold280G46859 Striga asiatica HOM05D005654 ORTHO05D006438 4.7e-07 58.9 46 63.0
EL10Ac9g22080 Beta vulgaris HOM05D005654 ORTHO05D006438 6.2e-07 58.5 99 38.4
Aa31LG4G19130 Aethionema arabicum HOM05D005654 ORTHO05D006438 1.1e-06 57.8 75 46.7
FAN20G0529 Fragaria x ananassa HOM05D005654 ORTHO05D006438 4.0e-06 55.8 64 50.0


User provided reference genes

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