Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb035620 Zea mays HOM05D005921 ORTHO05D007374 6.1e-54 213.8 99 100.0
Zm00001eb377250 Zea mays HOM05D005921 ORTHO05D007374 3.7e-27 124.8 56 96.4
CARHR291100 Cardamine hirsuta HOM05D005921 ORTHO05D007374 6.6e-24 114.0 55 87.3
Sp5g26720 Schrenkiella parvula HOM05D005921 ORTHO05D007374 1.5e-23 112.8 55 85.5
MBI01_g34168_MAGBIO Magnolia biondii HOM05D005921 ORTHO05D007374 2.5e-23 112.1 55 83.6
Thhalv10018610m.g Eutrema salsugineum HOM05D005921 ORTHO05D007374 3.3e-23 111.7 55 85.5
Aa31LG4G8950 Aethionema arabicum HOM05D005921 ORTHO05D007374 5.6e-23 110.9 55 83.6
BcaB05g24658 Brassica carinata HOM05D005921 ORTHO05D007374 7.3e-23 110.5 55 83.6
A02p17260 Brassica napus HOM05D005921 ORTHO05D007374 7.3e-23 110.5 55 83.6
C02p28900 Brassica napus HOM05D005921 ORTHO05D007374 7.3e-23 110.5 55 83.6
BolC2t08936H Brassica oleracea HOM05D005921 ORTHO05D007374 7.3e-23 110.5 55 83.6
BraA02t06773Z Brassica rapa HOM05D005921 ORTHO05D007374 7.3e-23 110.5 55 83.6
CiPaw.15G012300 Carya illinoinensis HOM05D005921 ORTHO05D007374 9.5e-23 110.2 55 81.8
AL2G31250 Arabidopsis lyrata HOM05D005921 ORTHO05D007374 1.6e-22 109.4 55 81.8
Cfa018279 Carpinus fangiana HOM05D005921 ORTHO05D007374 1.6e-22 109.4 55 81.8
Ciclev10003457m.g Citrus clementina HOM05D005921 ORTHO05D007374 2.1e-22 109.0 55 81.8
Carub.0002s1845 Capsella rubella HOM05D005921 ORTHO05D007374 2.8e-22 108.6 55 81.8
Cpa.g.sc26.80 Carica papaya HOM05D005921 ORTHO05D007374 2.8e-22 108.6 55 83.6
vmacro01494 Vaccinium macrocarpon HOM05D005921 ORTHO05D007374 2.8e-22 108.6 61 73.8
BcaC03g15284 Brassica carinata HOM05D005921 ORTHO05D007374 3.6e-22 108.2 55 81.8
Thecc.08G159700 Theobroma cacao HOM05D005921 ORTHO05D007374 3.6e-22 108.2 55 81.8
TPR.G17011 Trifolium pratense HOM05D005921 ORTHO05D007374 3.6e-22 108.2 55 78.2
GSVIVG01001409001 Vitis vinifera HOM05D005921 ORTHO05D007374 3.6e-22 108.2 55 81.8
Aqoxy6G00427 Aquilegia oxysepala HOM05D005921 ORTHO05D007374 4.7e-22 107.8 55 81.8
Duzib116G0900 Durio zibethinus HOM05D005921 ORTHO05D007374 4.7e-22 107.8 55 80.0
Gohir.A05G270866 Gossypium hirsutum HOM05D005921 ORTHO05D007374 4.7e-22 107.8 55 80.0
Gohir.D05G273101 Gossypium hirsutum HOM05D005921 ORTHO05D007374 4.7e-22 107.8 55 80.0
Gorai.009G286300 Gossypium raimondii HOM05D005921 ORTHO05D007374 4.7e-22 107.8 55 80.0
Atru.chr13.2001 Acer truncatum HOM05D005921 ORTHO05D007374 6.2e-22 107.5 55 81.8
Migut.N02950 Erythranthe guttata HOM05D005921 ORTHO05D007374 6.2e-22 107.5 55 80.0
Lj5g0014499 Lotus japonicus HOM05D005921 ORTHO05D007374 6.2e-22 107.5 55 78.2
Nn5g28835 Nelumbo nucifera HOM05D005921 ORTHO05D007374 6.2e-22 107.5 55 78.2
Lalb_Chr02g0141581 Lupinus albus HOM05D005921 ORTHO05D007374 8.0e-22 107.1 55 78.2
Lalb_Chr06g0161731 Lupinus albus HOM05D005921 ORTHO05D007374 8.0e-22 107.1 55 78.2
Eucgr.F04188 Eucalyptus grandis HOM05D005921 ORTHO05D007374 1.1e-21 106.7 55 78.2
Eucgr.L02800 Eucalyptus grandis HOM05D005921 ORTHO05D007374 1.1e-21 106.7 55 78.2
Medtr1g097955 Medicago truncatula HOM05D005921 ORTHO05D007374 1.1e-21 106.7 55 78.2
Psat0s899g0040 Pisum sativum HOM05D005921 ORTHO05D007374 1.1e-21 106.7 55 80.0
Sabra05G0149900 Salix brachista HOM05D005921 ORTHO05D007374 1.1e-21 106.7 61 70.5
arahy.Tifrunner.gnm1.ann1.9JVG50 Arachis hypogaea HOM05D005921 ORTHO05D007374 1.4e-21 106.3 55 78.2
arahy.Tifrunner.gnm1.ann1.TV90AE Arachis hypogaea HOM05D005921 ORTHO05D007374 1.4e-21 106.3 55 78.2
CSS0006668 Camellia sinensis var. sinensis HOM05D005921 ORTHO05D007374 1.4e-21 106.3 55 80.0
QL02p037446 Quercus lobata HOM05D005921 ORTHO05D007374 1.4e-21 106.3 55 80.0
QL02p037946 Quercus lobata HOM05D005921 ORTHO05D007374 1.4e-21 106.3 55 80.0
Cc10_g15280 Coffea canephora HOM05D005921 ORTHO05D007374 1.8e-21 105.9 55 78.2
Rhsim11G0087800 Rhododendron simsii HOM05D005921 ORTHO05D007374 1.8e-21 105.9 55 80.0
VMungo0720G0456 Vigna mungo HOM05D005921 ORTHO05D007374 1.8e-21 105.9 55 76.4
AUR62034891 Chenopodium quinoa HOM05D005921 ORTHO05D007374 2.3e-21 105.5 55 78.2
SalBow6G1744 Salvia bowleyana HOM05D005921 ORTHO05D007374 2.3e-21 105.5 55 80.0
SGA_v2.0_scaffold54G19682 Striga asiatica HOM05D005921 ORTHO05D007374 2.3e-21 105.5 55 80.0
AT1G71696 Arabidopsis thaliana HOM05D005921 ORTHO05D007374 3.1e-21 105.1 55 80.0
CDE04G2034 Ceratophyllum demersum HOM05D005921 ORTHO05D007374 3.1e-21 105.1 55 78.2
Ca_10662_v3 Cicer arietinum L. HOM05D005921 ORTHO05D007374 3.1e-21 105.1 55 76.4
Manes.02G183400 Manihot esculenta HOM05D005921 ORTHO05D007374 3.1e-21 105.1 55 76.4
Glyma.10G221400 Glycine max HOM05D005921 ORTHO05D007374 4.0e-21 104.8 55 76.4
Potri.005G197000 Populus trichocarpa HOM05D005921 ORTHO05D007374 4.0e-21 104.8 55 76.4
TAR381G0629 Trochodendron aralioides HOM05D005921 ORTHO05D007374 4.0e-21 104.8 55 78.2
Glyma.20G170200 Glycine max HOM05D005921 ORTHO05D007374 5.2e-21 104.4 55 76.4
HanXRQChr02g0042431 Helianthus annuus HOM05D005921 ORTHO05D007374 5.2e-21 104.4 56 75.0
MSTRG.22109 Avicennia marina HOM05D005921 ORTHO05D007374 8.9e-21 103.6 55 78.2
MSTRG.24492 Avicennia marina HOM05D005921 ORTHO05D007374 8.9e-21 103.6 55 78.2
DCAR_001188 Daucus carota HOM05D005921 ORTHO05D007374 8.9e-21 103.6 55 78.2
Prupe.8G040700 Prunus persica HOM05D005921 ORTHO05D007374 8.9e-21 103.6 55 80.0
Hma1.2p1_0358F.1_g134830 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 1.2e-20 103.2 55 76.4
Hma1.2p1_0358F.1_g134840 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 1.2e-20 103.2 55 76.4
unitig_578.g16229 Utricularia gibba HOM05D005921 ORTHO05D007374 1.2e-20 103.2 55 78.2
Ah.05g168190 Amaranthus hybridus HOM05D005921 ORTHO05D007374 1.5e-20 102.8 55 76.4
MELO3C019977.2 Cucumis melo HOM05D005921 ORTHO05D007374 1.5e-20 102.8 55 76.4
Phvul.007G083600 Phaseolus vulgaris HOM05D005921 ORTHO05D007374 1.5e-20 102.8 55 72.7
Solyc04g072010.3 Solanum lycopersicum HOM05D005921 ORTHO05D007374 1.5e-20 102.8 55 76.4
Sopen04g027990 Solanum pennellii HOM05D005921 ORTHO05D007374 1.5e-20 102.8 55 76.4
AUR62026635 Chenopodium quinoa HOM05D005921 ORTHO05D007374 2.0e-20 102.4 55 76.4
Lj4A704G63 Lonicera japonica HOM05D005921 ORTHO05D007374 2.0e-20 102.4 56 75.0
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 2.6e-20 102.1 56 71.4
EL10Ac1g01606 Beta vulgaris HOM05D005921 ORTHO05D007374 2.6e-20 102.1 55 76.4
Nitab4.5_0013157g0020 Nicotiana tabacum HOM05D005921 ORTHO05D007374 2.6e-20 102.1 55 76.4
PSO675G2388 Papaver somniferum HOM05D005921 ORTHO05D007374 2.6e-20 102.1 55 76.4
HPP92_000681 Vanilla planifolia HOM05D005921 ORTHO05D007374 2.6e-20 102.1 56 78.6
CAN.G1252.3 Capsicum annuum HOM05D005921 ORTHO05D007374 3.4e-20 101.7 55 74.5
Lj7A383T42 Lonicera japonica HOM05D005921 ORTHO05D007374 3.4e-20 101.7 57 71.9
MD05G1033700 Malus domestica HOM05D005921 ORTHO05D007374 3.4e-20 101.7 55 74.5
Peaxi162Scf00360g00056 Petunia axillaris HOM05D005921 ORTHO05D007374 3.4e-20 101.7 55 76.4
TWI32G1095 Tripterygium wilfordii HOM05D005921 ORTHO05D007374 3.4e-20 101.7 55 76.4
CsaV3_6G004990 Cucumis sativus L. HOM05D005921 ORTHO05D007374 5.8e-20 100.9 55 74.5
ECA247G3881 Erigeron canadensis HOM05D005921 ORTHO05D007374 5.8e-20 100.9 56 75.0
PGR044G0568 Punica granatum HOM05D005921 ORTHO05D007374 5.8e-20 100.9 55 74.5
Hund26678 Selenicereus undatus HOM05D005921 ORTHO05D007374 5.8e-20 100.9 55 76.4
Sc02g0003820 Simmondsia chinensis HOM05D005921 ORTHO05D007374 7.5e-20 100.5 55 72.7
Nitab4.5_0000099g0240 Nicotiana tabacum HOM05D005921 ORTHO05D007374 1.7e-19 99.4 57 75.4
SHI09099 Sapria himalayana HOM05D005921 ORTHO05D007374 1.7e-19 99.4 55 69.1
CANSAT25G0895 Cannabis sativa HOM05D005921 ORTHO05D007374 3.7e-19 98.2 56 69.6
Sed0007537 Sechium edule HOM05D005921 ORTHO05D007374 3.7e-19 98.2 55 72.7
ClCG08G007340 Citrullus lanatus HOM05D005921 ORTHO05D007374 4.9e-19 97.8 55 72.7
Lsat_1_v5_gn_1_5181 Lactuca sativa HOM05D005921 ORTHO05D007374 1.1e-18 96.7 56 69.6
HPP92_000638 Vanilla planifolia HOM05D005921 ORTHO05D007374 1.4e-18 96.3 70 61.4
RcHm_v2.0_Chr6g0274201 Rosa chinensis HOM05D005921 ORTHO05D007374 2.4e-18 95.5 55 70.9
FAN24G0054 Fragaria x ananassa HOM05D005921 ORTHO05D007374 7.0e-18 94.0 55 67.3
FvH4_2g13020 Fragaria vesca HOM05D005921 ORTHO05D007374 9.2e-18 93.6 55 67.3
FAN20G2564 Fragaria x ananassa HOM05D005921 ORTHO05D007374 9.2e-18 93.6 55 67.3
FAN27G2380 Fragaria x ananassa HOM05D005921 ORTHO05D007374 9.2e-18 93.6 55 67.3
FAN15G3525 Fragaria x ananassa HOM05D005921 ORTHO05D007374 1.6e-17 92.8 55 65.5
Mapoly0096s0032 Marchantia polymorpha HOM05D005921 ORTHO05D007374 6.0e-17 90.9 56 60.7
Pp3c16_14030 Physcomitrium patens HOM05D005921 ORTHO05D007374 8.6e-16 87.0 56 58.9
SMO116G0063 Selaginella moellendorffii HOM05D005921 ORTHO05D007374 1.5e-15 86.3 56 62.5
COL.COLO4_13778 Corchorus olitorius HOM05D005921 ORTHO05D007374 7.3e-15 84.0 106 41.5
AagrBONN_evm.TU.Sc2ySwM_344.3190 Anthoceros agrestis HOM05D005921 ORTHO05D007374 3.1e-13 78.6 69 47.8
Pp3c6_12100 Physcomitrium patens HOM05D005921 ORTHO05D007374 5.2e-13 77.8 54 53.7
Haze_17806 Corylus avellana HOM05D005921 ORTHO05D007374 1.2e-12 76.6 35 85.7
Oeu017621.1 Olea europaea HOM05D005921 ORTHO05D007374 1.3e-11 73.2 35 82.9
SEGI_16149 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 2.2e-11 72.4 34 82.4
CBR_g30849 Chara braunii HOM05D005921 ORTHO05D007374 6.4e-11 70.9 56 48.2
PRCOL_00005633 Prasinoderma coloniale HOM05D005921 ORTHO05D007374 3.0e-08 62.0 57 43.9
Ciclev10003529m.g Citrus clementina HOM05D005921 ORTHO05D007374 3.3e-07 58.5 75 42.7


User provided reference genes

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