Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 1.1e-140 503.4 292 100.0
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 3.6e-118 428.7 282 85.5
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 5.5e-87 325.1 290 69.7
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 4.4e-76 288.9 246 59.8
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.1e-71 274.2 245 58.8
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 1.2e-70 270.8 243 57.6
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 1.6e-70 270.4 245 59.2
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 2.8e-70 269.6 245 58.0
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 3.1e-69 266.2 247 57.5
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 3.1e-69 266.2 243 57.6
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 3.1e-69 266.2 246 56.5
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 8.9e-69 264.6 246 56.9
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 1.2e-68 264.2 245 58.4
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 2.6e-68 263.1 245 57.1
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 4.4e-68 262.3 244 56.1
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 5.8e-68 261.9 246 57.3
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 1.3e-67 260.8 245 56.7
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 2.2e-67 260.0 246 56.9
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 2.2e-67 260.0 241 57.7
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 2.9e-67 259.6 245 56.7
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 2.9e-67 259.6 300 58.7
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 2.9e-67 259.6 243 54.7
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 3.7e-67 259.2 244 56.1
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 4.9e-67 258.8 245 57.6
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 4.9e-67 258.8 243 56.0
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 1.1e-66 257.7 244 57.0
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 1.9e-66 256.9 244 55.7
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 4.1e-66 255.8 246 56.1
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 5.4e-66 255.4 289 58.1
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 1.6e-65 253.8 243 57.2
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 1.6e-65 253.8 242 55.8
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 2.0e-65 253.4 243 55.1
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 2.7e-65 253.1 243 54.7
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 2.7e-65 253.1 245 55.1
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 3.5e-65 252.7 255 53.3
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 3.5e-65 252.7 241 57.3
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 3.5e-65 252.7 241 57.3
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 3.5e-65 252.7 245 54.7
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 6.0e-65 251.9 245 54.7
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 6.0e-65 251.9 243 54.7
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 6.0e-65 251.9 244 54.9
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 6.0e-65 251.9 232 56.9
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 1.3e-64 250.8 233 57.9
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 1.3e-64 250.8 266 52.3
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 1.7e-64 250.4 247 54.7
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 1.7e-64 250.4 243 56.8
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 2.3e-64 250.0 235 55.7
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 3.9e-64 249.2 245 56.3
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 6.6e-64 248.4 243 54.3
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 6.6e-64 248.4 243 54.3
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 6.6e-64 248.4 243 54.3
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 8.6e-64 248.1 241 54.4
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 1.5e-63 247.3 248 57.3
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 2.5e-63 246.5 223 57.8
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 4.3e-63 245.7 250 54.4
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 4.3e-63 245.7 250 54.4
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 5.6e-63 245.4 231 55.0
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 7.3e-63 245.0 239 54.8
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 7.3e-63 245.0 246 56.1
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 7.3e-63 245.0 245 53.9
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 7.3e-63 245.0 250 54.0
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 1.2e-62 244.2 245 53.9
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 2.1e-62 243.4 248 55.6
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 2.8e-62 243.0 248 54.0
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 6.2e-62 241.9 248 52.8
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 8.1e-62 241.5 232 54.3
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 1.1e-61 241.1 288 56.6
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 1.1e-61 241.1 245 53.1
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.1e-61 241.1 247 53.8
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 1.4e-61 240.7 233 54.5
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 1.8e-61 240.4 248 55.2
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.8e-61 240.4 246 54.9
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 1.8e-61 240.4 233 54.1
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 3.1e-61 239.6 244 52.5
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 5.2e-61 238.8 249 52.6
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 6.8e-61 238.4 249 52.2
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 6.8e-61 238.4 248 52.0
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 2.0e-60 236.9 234 54.7
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 2.0e-60 236.9 231 55.4
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 2.6e-60 236.5 246 53.7
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 2.6e-60 236.5 231 55.0
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 2.6e-60 236.5 246 52.8
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 4.4e-60 235.7 245 53.9
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 4.4e-60 235.7 244 52.5
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 5.8e-60 235.3 230 54.8
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 7.5e-60 235.0 248 54.8
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 7.5e-60 235.0 245 53.5
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 1.3e-59 234.2 245 53.9
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.3e-59 234.2 248 53.2
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 2.2e-59 233.4 266 49.6
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 3.7e-59 232.6 227 53.3
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 4.9e-59 232.3 251 51.8
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 8.3e-59 231.5 244 53.3
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 5.4e-58 228.8 246 52.0
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 7.8e-57 224.9 230 52.2
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 3.0e-56 223.0 242 51.2
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 1.2e-54 217.6 237 51.5
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 1.6e-54 217.2 302 44.7
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 2.1e-54 216.9 212 54.7
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 2.8e-54 216.5 252 50.0
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 3.6e-54 216.1 241 50.2
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 4.7e-54 215.7 247 50.6
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 8.1e-54 214.9 243 50.6
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 1.8e-53 213.8 221 52.5
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 2.3e-53 213.4 279 45.9
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 8.9e-53 211.5 248 49.2
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 1.2e-52 211.1 248 50.4
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 4.4e-52 209.1 254 49.2
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 5.8e-52 208.8 233 50.6
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 9.9e-52 208.0 255 49.0
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 1.3e-51 207.6 253 49.0
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 1.3e-51 207.6 211 54.5
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 2.9e-51 206.5 240 49.2
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 6.4e-51 205.3 233 50.2
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 1.4e-50 204.1 233 50.2
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 9.2e-50 201.4 244 45.5
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 1.6e-49 200.7 244 50.0
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 6.0e-49 198.7 229 48.5
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 4.3e-47 192.6 252 45.2
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 4.3e-47 192.6 204 51.0
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 8.9e-45 184.9 241 45.2
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 3.4e-44 183.0 240 47.1
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 1.7e-43 180.6 238 47.5
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 4.2e-42 176.0 183 54.1
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 1.2e-41 174.5 211 45.0
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 2.1e-41 173.7 182 52.2
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 1.7e-40 170.6 247 42.5
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 6.6e-40 168.7 191 49.2
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 6.6e-40 168.7 202 47.0
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 2.5e-39 166.8 201 50.7
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 1.1e-37 161.4 169 49.7
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 8.4e-27 125.2 131 51.9
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 1.4e-26 124.4 237 36.7
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 4.2e-26 122.9 143 48.3
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 2.1e-25 120.6 235 37.4
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 8.7e-24 115.2 224 35.7
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 3.3e-23 113.2 253 36.0
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 1.6e-22 110.9 224 33.9
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 2.1e-22 110.5 230 36.1
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 6.2e-22 109.0 258 32.6
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 1.1e-21 108.2 224 37.1
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 1.4e-21 107.8 201 41.8
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.8e-21 107.5 221 34.4
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 5.3e-21 105.9 233 34.3
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.0e-19 101.7 208 35.1
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.0e-19 101.7 229 32.8
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 4.2e-18 96.3 224 33.9
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 5.5e-18 95.9 226 33.2
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 5.5e-18 95.9 230 32.2
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 9.3e-18 95.1 52 80.8
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 1.3e-16 91.3 250 30.4
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 1.3e-16 91.3 256 32.0
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 2.3e-16 90.5 233 33.0
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 5.1e-16 89.4 223 34.1
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 6.7e-16 89.0 262 33.2
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 8.7e-16 88.6 222 35.1
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 3.3e-15 86.7 237 32.1
PGR083G0898 Punica granatum HOM05D004124 ORTHO05D004779 3.7e-14 83.2 164 39.0
PGR083G1960 Punica granatum HOM05D000500 ORTHO05D000367 5.9e-12 75.9 59 59.3
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 1.3e-11 74.7 51 62.7
Actinidia20714 Actinidia chinensis HOM05D004124 ORTHO05D004779 2.2e-11 73.9 58 60.3
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 2.9e-11 73.6 195 32.8
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 2.5e-10 70.5 236 28.4
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 3.6e-09 66.6 162 34.6
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 1.8e-08 64.3 179 31.8
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 6.7e-08 62.4 142 35.2
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 1.9e-07 60.8 241 33.2
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 4.3e-07 59.7 52 50.0
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 1.6e-06 57.8 33 66.7
VMungo1383G0643 Vigna mungo HOM05D004124 ORTHO05D004779 2.8e-06 57.0 51 49.0
PSO063G6881 Papaver somniferum HOM05D004124 ORTHO05D004779 6.3e-06 55.8 145 31.7


User provided reference genes

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