Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb034360 Zea mays HOM05D006553 ORTHO05D008070 1.6e-133 479.6 261 100.0
Zm00001eb242810 Zea mays HOM05D006553 ORTHO05D008070 2.6e-88 329.3 230 83.9
Zm00001eb049670 Zea mays HOM05D006553 ORTHO05D008070 5.0e-79 298.5 208 78.8
Os02g0533200 Oryza sativa ssp. japonica HOM05D006553 ORTHO05D008070 3.0e-60 236.1 225 68.9
Cc06_g05810 Coffea canephora HOM05D006553 ORTHO05D008070 2.7e-48 196.4 192 62.5
Hma1.2p1_0232F.1_g097960 Hydrangea macrophylla HOM05D006553 ORTHO05D008070 2.9e-47 193.0 195 62.6
Phvul.001G190400 Phaseolus vulgaris HOM05D006553 ORTHO05D008070 6.5e-47 191.8 239 54.8
Hma1.2p1_0232F.1_g097970 Hydrangea macrophylla HOM05D006553 ORTHO05D008070 8.5e-47 191.4 193 62.7
Nn2g14162 Nelumbo nucifera HOM05D006553 ORTHO05D008070 8.5e-47 191.4 228 57.0
MSTRG.10367 Avicennia marina HOM05D006553 ORTHO05D008070 3.2e-46 189.5 193 60.1
Haze_19616 Corylus avellana HOM05D006553 ORTHO05D008070 4.2e-46 189.1 239 54.4
FvH4_6g18800 Fragaria vesca HOM05D006553 ORTHO05D008070 7.2e-46 188.3 193 60.6
TAR636G1909 Trochodendron aralioides HOM05D006553 ORTHO05D008070 7.2e-46 188.3 203 61.1
RcHm_v2.0_Chr3g0473811 Rosa chinensis HOM05D006553 ORTHO05D008070 9.4e-46 188.0 193 60.6
GSVIVG01033848001 Vitis vinifera HOM05D006553 ORTHO05D008070 9.4e-46 188.0 193 62.2
Eucgr.A02662 Eucalyptus grandis HOM05D006553 ORTHO05D008070 1.2e-45 187.6 193 60.1
MD12G1036600 Malus domestica HOM05D006553 ORTHO05D008070 1.6e-45 187.2 193 59.6
Migut.L01780 Erythranthe guttata HOM05D006553 ORTHO05D008070 2.1e-45 186.8 193 59.1
FAN02G1927 Fragaria x ananassa HOM05D006553 ORTHO05D008070 3.6e-45 186.0 193 59.6
FAN05G5513 Fragaria x ananassa HOM05D006553 ORTHO05D008070 3.6e-45 186.0 193 60.1
Cfa016612 Carpinus fangiana HOM05D006553 ORTHO05D008070 4.7e-45 185.7 239 53.6
CANSAT64G1380 Cannabis sativa HOM05D006553 ORTHO05D008070 8.0e-45 184.9 215 55.3
Thecc.05G089700 Theobroma cacao HOM05D006553 ORTHO05D008070 1.0e-44 184.5 193 61.1
CiPaw.09G014600 Carya illinoinensis HOM05D006553 ORTHO05D008070 1.8e-44 183.7 195 61.5
Solyc10g083350.2 Solanum lycopersicum HOM05D006553 ORTHO05D008070 2.3e-44 183.3 193 59.6
Sopen10g032850 Solanum pennellii HOM05D006553 ORTHO05D008070 2.3e-44 183.3 193 59.6
QL07p038710 Quercus lobata HOM05D006553 ORTHO05D008070 3.0e-44 183.0 243 53.5
QL07p038960 Quercus lobata HOM05D006553 ORTHO05D008070 3.0e-44 183.0 243 53.5
SGA_v2.0_scaffold35G14069 Striga asiatica HOM05D006553 ORTHO05D008070 3.0e-44 183.0 193 58.5
Atru.chr8.1531 Acer truncatum HOM05D006553 ORTHO05D008070 5.2e-44 182.2 193 59.1
CSS0014047 Camellia sinensis var. sinensis HOM05D006553 ORTHO05D008070 5.2e-44 182.2 196 60.2
HanXRQChr05g0133131 Helianthus annuus HOM05D006553 ORTHO05D008070 5.2e-44 182.2 197 59.4
Sed0026247 Sechium edule HOM05D006553 ORTHO05D008070 5.2e-44 182.2 193 60.1
Gohir.A04G062500 Gossypium hirsutum HOM05D006553 ORTHO05D008070 6.8e-44 181.8 193 60.1
Gohir.D04G099500 Gossypium hirsutum HOM05D006553 ORTHO05D008070 1.5e-43 180.6 193 59.6
Medtr7g104650 Medicago truncatula HOM05D006553 ORTHO05D008070 1.5e-43 180.6 193 59.6
PGSC0003DMG400028255 Solanum tuberosum HOM05D006553 ORTHO05D008070 1.5e-43 180.6 193 58.5
HPP92_006351 Vanilla planifolia HOM05D006553 ORTHO05D008070 1.5e-43 180.6 198 54.0
Lalb_Chr01g0018141 Lupinus albus HOM05D006553 ORTHO05D008070 2.0e-43 180.3 193 59.1
Glyma.19G194936 Glycine max HOM05D006553 ORTHO05D008070 2.6e-43 179.9 202 58.4
MBI17_g08341_MAGBIO Magnolia biondii HOM05D006553 ORTHO05D008070 2.6e-43 179.9 207 55.6
PGR004G2635 Punica granatum HOM05D006553 ORTHO05D008070 3.4e-43 179.5 232 53.9
SalBow5G0069 Salvia bowleyana HOM05D006553 ORTHO05D008070 3.4e-43 179.5 192 57.8
CAN.G1069.17 Capsicum annuum HOM05D006553 ORTHO05D008070 4.4e-43 179.1 247 51.0
TPR.G19533 Trifolium pratense HOM05D006553 ORTHO05D008070 4.4e-43 179.1 235 52.8
Ciclev10012335m.g Citrus clementina HOM05D006553 ORTHO05D008070 5.7e-43 178.7 192 58.9
Gorai.009G402400 Gossypium raimondii HOM05D006553 ORTHO05D008070 5.7e-43 178.7 244 51.6
vmacro08867 Vaccinium macrocarpon HOM05D006553 ORTHO05D008070 5.7e-43 178.7 193 60.1
arahy.Tifrunner.gnm1.ann1.8A6FDN Arachis hypogaea HOM05D006553 ORTHO05D008070 7.5e-43 178.3 192 59.4
CARHR084610 Cardamine hirsuta HOM05D006553 ORTHO05D008070 7.5e-43 178.3 218 56.0
Cpa.g.sc5.16 Carica papaya HOM05D006553 ORTHO05D008070 9.8e-43 177.9 193 59.6
CDE07G1033 Ceratophyllum demersum HOM05D006553 ORTHO05D008070 9.8e-43 177.9 212 53.8
VMungo1383G0588 Vigna mungo HOM05D006553 ORTHO05D008070 9.8e-43 177.9 193 60.1
arahy.Tifrunner.gnm1.ann1.J3GQ4Y Arachis hypogaea HOM05D006553 ORTHO05D008070 1.3e-42 177.6 192 58.9
BraA05t22687Z Brassica rapa HOM05D006553 ORTHO05D008070 1.3e-42 177.6 203 59.1
Thhalv10021175m.g Eutrema salsugineum HOM05D006553 ORTHO05D008070 1.3e-42 177.6 193 60.1
Lsat_1_v5_gn_8_77160 Lactuca sativa HOM05D006553 ORTHO05D008070 1.3e-42 177.6 215 54.9
Ca_09008_v3 Cicer arietinum L. HOM05D006553 ORTHO05D008070 1.7e-42 177.2 233 51.1
Lj1g0017162 Lotus japonicus HOM05D006553 ORTHO05D008070 1.7e-42 177.2 193 57.5
ECA236G1922 Erigeron canadensis HOM05D006553 ORTHO05D008070 2.2e-42 176.8 193 58.0
Peaxi162Scf00096g00313 Petunia axillaris HOM05D006553 ORTHO05D008070 2.2e-42 176.8 192 59.9
THA.LOC104816396 Tarenaya hassleriana HOM05D006553 ORTHO05D008070 2.2e-42 176.8 211 56.9
Zm00001eb215700 Zea mays HOM05D006553 ORTHO05D008070 2.2e-42 176.8 139 70.5
Manes.08G025600 Manihot esculenta HOM05D006553 ORTHO05D008070 2.8e-42 176.4 260 47.7
BcaNung06241 Brassica carinata HOM05D006553 ORTHO05D008070 3.7e-42 176.0 234 53.4
A05p38960 Brassica napus HOM05D006553 ORTHO05D008070 3.7e-42 176.0 203 58.6
BolC5t34455H Brassica oleracea HOM05D006553 ORTHO05D008070 3.7e-42 176.0 234 53.8
Carub.0008s0494 Capsella rubella HOM05D006553 ORTHO05D008070 3.7e-42 176.0 213 56.8
PSO339G0456 Papaver somniferum HOM05D006553 ORTHO05D008070 4.9e-42 175.6 194 57.2
Actinidia31271 Actinidia chinensis HOM05D006553 ORTHO05D008070 8.3e-42 174.9 235 51.9
PSO384G2101 Papaver somniferum HOM05D006553 ORTHO05D008070 8.3e-42 174.9 223 51.6
Sc20g0006300 Simmondsia chinensis HOM05D006553 ORTHO05D008070 8.3e-42 174.9 193 58.5
MELO3C009475.2 Cucumis melo HOM05D006553 ORTHO05D008070 1.1e-41 174.5 197 56.9
Aqoxy2G01179 Aquilegia oxysepala HOM05D006553 ORTHO05D008070 1.8e-41 173.7 193 60.1
COL.COLO4_29728 Corchorus olitorius HOM05D006553 ORTHO05D008070 2.4e-41 173.3 224 54.0
Sabra16G0099500 Salix brachista HOM05D006553 ORTHO05D008070 5.4e-41 172.2 235 50.2
ClCG10G018950 Citrullus lanatus HOM05D006553 ORTHO05D008070 2.0e-40 170.2 193 57.5
CsaV3_3G037300 Cucumis sativus L. HOM05D006553 ORTHO05D008070 2.7e-40 169.9 193 56.5
AT3G10130 Arabidopsis thaliana HOM05D006553 ORTHO05D008070 3.5e-40 169.5 250 51.2
Glyma.03G196100 Glycine max HOM05D006553 ORTHO05D008070 5.9e-40 168.7 202 55.0
Sp3g08410 Schrenkiella parvula HOM05D006553 ORTHO05D008070 1.0e-39 167.9 195 57.4
Dinv21203 Davidia involucrata HOM05D006553 ORTHO05D008070 1.3e-39 167.5 181 59.7
unitig_8.g4964 Utricularia gibba HOM05D006553 ORTHO05D008070 1.3e-39 167.5 189 57.1
Aa31LG3G2660 Aethionema arabicum HOM05D006553 ORTHO05D008070 3.8e-39 166.0 255 48.6
Hund19930 Selenicereus undatus HOM05D006553 ORTHO05D008070 1.1e-38 164.5 193 56.5
SEGI_29247 Sequoiadendron giganteum HOM05D006553 ORTHO05D008070 1.9e-38 163.7 202 51.0
SEGI_38541 Sequoiadendron giganteum HOM05D006553 ORTHO05D008070 1.9e-38 163.7 202 51.0
Rhsim04G0131900 Rhododendron simsii HOM05D006553 ORTHO05D008070 1.6e-37 160.6 162 62.3
EL10Ac7g16914 Beta vulgaris HOM05D006553 ORTHO05D008070 4.7e-37 159.1 193 57.5
ATR0776G018 Amborella trichopoda HOM05D006553 ORTHO05D008070 6.1e-37 158.7 212 51.9
AUR62028519 Chenopodium quinoa HOM05D006553 ORTHO05D008070 1.8e-36 157.1 193 56.5
Potri.016G098500 Populus trichocarpa HOM05D006553 ORTHO05D008070 6.8e-36 155.2 223 44.8
Zm00001eb215690 Zea mays HOM05D006553 ORTHO05D008070 2.6e-35 153.3 99 80.8
C05p57990 Brassica napus HOM05D006553 ORTHO05D008070 1.3e-34 151.0 176 57.4
Lj3A997G43 Lonicera japonica HOM05D006553 ORTHO05D008070 9.2e-33 144.8 262 42.0
Pp3c23_15420 Physcomitrium patens HOM05D006553 ORTHO05D008070 5.6e-30 135.6 233 43.3
Prupe.7G109600 Prunus persica HOM05D006553 ORTHO05D008070 1.8e-28 130.6 173 50.3
FAN05G5318 Fragaria x ananassa HOM05D006553 ORTHO05D008070 5.2e-28 129.0 141 58.2
Mapoly0131s0003 Marchantia polymorpha HOM05D006553 ORTHO05D008070 1.7e-26 124.0 190 40.0
DCAR_013388 Daucus carota HOM05D006553 ORTHO05D008070 9.2e-25 118.2 98 72.4
Psat0s2641g0200 Pisum sativum HOM05D003122 ORTHO05D008070 1.6e-24 117.5 98 72.4
AL3G21450 Arabidopsis lyrata HOM05D006553 ORTHO05D008070 2.0e-24 117.1 162 47.5
Nitab4.5_0013616g0010 Nicotiana tabacum HOM05D006553 ORTHO05D008070 7.8e-24 115.2 99 69.7
Nitab4.5_0009023g0010 Nicotiana tabacum HOM05D006553 ORTHO05D008070 1.5e-19 100.9 186 44.6
AagrBONN_evm.TU.Sc2ySwM_117.1600 Anthoceros agrestis HOM05D006553 ORTHO05D008070 4.9e-18 95.9 122 49.2
TWI77G0984 Tripterygium wilfordii HOM05D006553 ORTHO05D008070 4.9e-18 95.9 111 54.1
Ah.08g210560 Amaranthus hybridus HOM05D006553 ORTHO05D008070 5.4e-17 92.4 99 61.6
CBR_g26276 Chara braunii HOM05D006553 ORTHO05D008070 5.1e-15 85.9 188 36.2
SEGI_00359 Sequoiadendron giganteum HOM05D006553 ORTHO05D008070 6.8e-12 75.5 90 47.8
Atru.chr8.1529 Acer truncatum HOM05D006553 ORTHO05D008070 3.4e-11 73.2 74 52.7
DCAR_029780 Daucus carota HOM05D002603 ORTHO05D002907 5.8e-11 72.4 46 73.9
Cc06_g09080 Coffea canephora HOM05D005882 ORTHO05D007387 1.7e-10 70.9 137 34.3
CSS0039949 Camellia sinensis var. sinensis HOM05D005882 ORTHO05D007387 2.9e-10 70.1 137 33.6
TWI77G0457 Tripterygium wilfordii HOM05D006553 ORTHO05D008070 2.9e-10 70.1 73 50.7
Lalb_Chr08g0234911 Lupinus albus HOM05D005882 ORTHO05D007387 4.9e-10 69.3 137 33.6
Potri.018G073501 Populus trichocarpa HOM05D005882 ORTHO05D007387 1.1e-09 68.2 137 33.6
Zm00001eb435590 Zea mays HOM05D000782 ORTHO05D000571 1.1e-09 68.2 35 88.6
Atru.chr7.1254 Acer truncatum HOM05D005882 ORTHO05D007387 1.4e-09 67.8 137 34.3
Lj7C636G5 Lonicera japonica HOM05D005882 ORTHO05D003491 1.9e-09 67.4 137 31.4
Migut.J01232 Erythranthe guttata HOM05D005882 ORTHO05D007387 2.4e-09 67.0 133 33.8
Pp3c4_1490 Physcomitrium patens HOM05D005882 ORTHO05D007387 3.2e-09 66.6 132 33.3
SalBow1G1298 Salvia bowleyana HOM05D005882 ORTHO05D007387 3.2e-09 66.6 137 32.1
BcaNung05910 Brassica carinata HOM05D006553 ORTHO05D008070 4.1e-09 66.2 38 81.6
Medtr2g054130 Medicago truncatula HOM05D005882 ORTHO05D007387 4.1e-09 66.2 137 31.4
Medtr2g055010 Medicago truncatula HOM05D005882 ORTHO05D007387 4.1e-09 66.2 137 31.4
GSVIVG01015471001 Vitis vinifera HOM05D005882 ORTHO05D007387 4.1e-09 66.2 137 32.8
THA.LOC104811045 Tarenaya hassleriana HOM05D005882 ORTHO05D007387 5.4e-09 65.9 133 34.6
DCAR_017850 Daucus carota HOM05D005882 ORTHO05D007387 7.1e-09 65.5 137 31.4
QL02p087039 Quercus lobata HOM05D005882 ORTHO05D007387 1.2e-08 64.7 137 33.6
Sabra18G0062300 Salix brachista HOM05D005882 ORTHO05D007387 1.2e-08 64.7 136 31.6
RcHm_v2.0_Chr2g0089501 Rosa chinensis HOM05D005882 ORTHO05D007387 1.6e-08 64.3 137 31.4
Duzib168G0824 Durio zibethinus HOM05D005882 ORTHO05D007387 2.1e-08 63.9 170 31.8
Psat1g026560 Pisum sativum HOM05D005882 ORTHO05D007387 2.1e-08 63.9 137 30.7
Solyc05g047480.2 Solanum lycopersicum HOM05D006553 ORTHO05D008070 2.1e-08 63.9 38 78.9
EL10Ac8g18577 Beta vulgaris HOM05D005882 ORTHO05D007387 2.7e-08 63.5 137 32.1
CiPaw.03G238600 Carya illinoinensis HOM05D005882 ORTHO05D007387 3.5e-08 63.2 169 30.2
Glyma.06G214700 Glycine max HOM05D005882 ORTHO05D007387 3.5e-08 63.2 149 30.9
QL02p087048 Quercus lobata HOM05D005882 ORTHO05D007387 3.5e-08 63.2 137 32.8
TPR.G7510 Trifolium pratense HOM05D005882 ORTHO05D007387 3.5e-08 63.2 137 30.7
Ca_28117_v3 Cicer arietinum L. HOM05D005882 ORTHO05D007387 4.6e-08 62.8 137 29.9
Thhalv10004416m.g Eutrema salsugineum HOM05D005882 ORTHO05D007387 4.6e-08 62.8 137 32.8
Mapoly0088s0023 Marchantia polymorpha HOM05D005882 ORTHO05D007387 4.6e-08 62.8 137 30.7
CARHR192690 Cardamine hirsuta HOM05D005882 ORTHO05D007387 6.0e-08 62.4 137 32.8
Haze_25642 Corylus avellana HOM05D005882 ORTHO05D007387 6.0e-08 62.4 137 32.1
Haze_25647 Corylus avellana HOM05D005882 ORTHO05D007387 6.0e-08 62.4 137 32.1
Manes.06G059700 Manihot esculenta HOM05D005882 ORTHO05D007387 6.0e-08 62.4 137 31.4
Ciclev10008577m.g Citrus clementina HOM05D005882 ORTHO05D007387 7.8e-08 62.0 137 32.8
Gohir.A05G019800 Gossypium hirsutum HOM05D005882 ORTHO05D007387 7.8e-08 62.0 133 30.1
Peaxi162Scf00170g00322 Petunia axillaris HOM05D005882 ORTHO05D007387 7.8e-08 62.0 137 31.4
FvH4_1g04030 Fragaria vesca HOM05D005882 ORTHO05D007387 1.0e-07 61.6 137 30.7
FAN19G1300 Fragaria x ananassa HOM05D005882 ORTHO05D007387 1.0e-07 61.6 137 30.7
FAN23G2815 Fragaria x ananassa HOM05D000145 ORTHO05D007387 1.0e-07 61.6 137 30.7
FAN26G2120 Fragaria x ananassa HOM05D000145 ORTHO05D007387 1.0e-07 61.6 137 30.7
MSTRG.6078 Avicennia marina HOM05D005882 ORTHO05D007387 1.3e-07 61.2 175 28.6
C07p38700 Brassica napus HOM05D005882 ORTHO05D007387 1.3e-07 61.2 135 34.1
BolC7t44391H Brassica oleracea HOM05D005882 ORTHO05D007387 1.3e-07 61.2 135 34.1
Carub.0006s1852 Capsella rubella HOM05D005882 ORTHO05D007387 1.3e-07 61.2 137 32.1
Eucgr.C01104 Eucalyptus grandis HOM05D005882 ORTHO05D007387 1.3e-07 61.2 133 29.3
AL6G31690 Arabidopsis lyrata HOM05D005882 ORTHO05D007387 1.7e-07 60.8 138 30.4
arahy.Tifrunner.gnm1.ann1.G1MC5D Arachis hypogaea HOM05D005882 ORTHO05D007387 1.7e-07 60.8 137 30.7
arahy.Tifrunner.gnm1.ann1.WI060A Arachis hypogaea HOM05D005882 ORTHO05D007387 1.7e-07 60.8 137 30.7
Cfa003320 Carpinus fangiana HOM05D005882 ORTHO05D007387 1.7e-07 60.8 137 31.4
Prupe.7G236600 Prunus persica HOM05D005882 ORTHO05D007387 1.7e-07 60.8 133 31.6
A06p39580 Brassica napus HOM05D005882 ORTHO05D007387 2.3e-07 60.5 133 32.3
BraA06t26872Z Brassica rapa HOM05D005882 ORTHO05D007387 2.3e-07 60.5 133 32.3
Gohir.D05G020900 Gossypium hirsutum HOM05D005882 ORTHO05D007387 2.3e-07 60.5 133 30.1
Gorai.009G021100 Gossypium raimondii HOM05D005882 ORTHO05D007387 2.3e-07 60.5 133 30.1
ATR0026G035 Amborella trichopoda HOM05D005882 ORTHO05D007387 3.0e-07 60.1 137 29.2
AT5G20140 Arabidopsis thaliana HOM05D005882 ORTHO05D007387 3.0e-07 60.1 138 30.4
COL.COLO4_34981 Corchorus olitorius HOM05D005882 ORTHO05D007387 3.0e-07 60.1 137 33.6
CsaV3_1G031090 Cucumis sativus L. HOM05D005882 ORTHO05D007387 3.0e-07 60.1 133 33.8
CANSAT56G3469 Cannabis sativa HOM05D005882 ORTHO05D007387 3.9e-07 59.7 137 29.9
Dinv41550 Davidia involucrata HOM05D005882 ORTHO05D007387 3.9e-07 59.7 175 26.3
PGSC0003DMG400001057 Solanum tuberosum HOM05D005882 ORTHO05D007387 3.9e-07 59.7 137 29.9
Solyc01g056880.3 Solanum lycopersicum HOM05D006553 ORTHO05D008070 5.1e-07 59.3 37 78.4
CAN.G713.5 Capsicum annuum HOM05D005882 ORTHO05D007387 6.6e-07 58.9 137 29.2
Aa31LG4G12580 Aethionema arabicum HOM05D005882 ORTHO05D007387 8.6e-07 58.5 137 29.9
Lsat_1_v5_gn_9_103860 Lactuca sativa HOM05D006553 ORTHO05D008070 1.5e-06 57.8 40 67.5
Sed0000713 Sechium edule HOM05D005882 ORTHO05D007387 1.5e-06 57.8 133 31.6
Solyc12g006805.1 Solanum lycopersicum HOM05D005882 ORTHO05D007387 2.5e-06 57.0 137 29.2
RcHm_v2.0_Chr2g0159491 Rosa chinensis HOM05D006553 ORTHO05D008070 3.3e-06 56.6 35 71.4
Sopen12g002780 Solanum pennellii HOM05D005882 ORTHO05D007387 3.3e-06 56.6 137 29.2
Atru.chr12.1331 Acer truncatum HOM05D006553 ORTHO05D008070 9.6e-06 55.1 34 73.5


User provided reference genes

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