Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 4.9e-235 817.4 404 100.0
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 1.7e-211 739.2 404 88.4
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 2.6e-204 715.3 402 86.1
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 7.7e-204 713.8 402 85.3
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 2.2e-203 712.2 402 86.1
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 1.4e-202 709.5 402 85.8
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 7.2e-202 707.2 402 85.1
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 7.2e-202 707.2 402 85.6
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 9.4e-202 706.8 402 84.8
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 1.6e-201 706.1 402 85.3
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 2.7e-201 705.3 402 84.3
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 2.7e-201 705.3 402 84.8
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 6.1e-201 704.1 402 84.1
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 1.0e-200 703.4 402 84.6
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 1.0e-200 703.4 401 84.5
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 1.0e-200 703.4 402 84.6
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 1.0e-200 703.4 402 84.1
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 1.8e-200 702.6 402 84.1
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 1.8e-200 702.6 402 84.6
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 1.8e-200 702.6 402 83.8
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 2.3e-200 702.2 402 84.6
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 2.3e-200 702.2 402 83.8
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 2.3e-200 702.2 402 83.8
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 3.0e-200 701.8 402 83.8
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 3.9e-200 701.4 402 84.1
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 3.9e-200 701.4 402 83.3
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 3.9e-200 701.4 402 83.8
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 5.1e-200 701.0 402 83.8
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 6.7e-200 700.7 402 84.3
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 8.8e-200 700.3 402 84.1
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 8.8e-200 700.3 402 84.1
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 8.8e-200 700.3 402 84.3
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 8.8e-200 700.3 402 83.6
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 8.8e-200 700.3 402 83.6
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 1.1e-199 699.9 402 83.6
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 1.1e-199 699.9 402 84.1
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 1.1e-199 699.9 402 83.8
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.5e-199 699.5 402 83.3
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 1.5e-199 699.5 402 83.3
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 2.0e-199 699.1 402 83.8
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 2.6e-199 698.7 402 84.1
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 3.3e-199 698.4 402 83.8
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 3.3e-199 698.4 402 83.8
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 3.3e-199 698.4 402 83.8
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 4.4e-199 698.0 402 83.8
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 4.4e-199 698.0 402 83.6
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 4.4e-199 698.0 402 83.8
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 4.4e-199 698.0 402 83.3
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 5.7e-199 697.6 402 83.8
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 7.4e-199 697.2 402 83.6
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 1.3e-198 696.4 402 83.3
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 1.3e-198 696.4 402 83.3
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 1.3e-198 696.4 402 84.1
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 1.3e-198 696.4 402 83.6
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 1.7e-198 696.0 402 83.1
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 1.7e-198 696.0 402 83.1
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 2.2e-198 695.7 402 83.1
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 2.2e-198 695.7 402 82.8
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 2.8e-198 695.3 402 83.3
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 2.8e-198 695.3 402 82.8
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 2.8e-198 695.3 402 83.6
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 3.7e-198 694.9 402 83.3
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 4.8e-198 694.5 402 82.8
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 4.8e-198 694.5 402 82.8
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 4.8e-198 694.5 402 82.8
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 6.3e-198 694.1 402 82.8
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 6.3e-198 694.1 402 82.6
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 6.3e-198 694.1 402 83.1
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 8.2e-198 693.7 402 82.1
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.1e-197 693.3 402 82.8
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 4.1e-197 691.4 402 83.1
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 4.1e-197 691.4 402 82.1
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 4.1e-197 691.4 402 82.8
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 6.9e-197 690.6 411 81.8
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 6.9e-197 690.6 402 82.3
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 9.1e-197 690.3 402 82.6
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 9.1e-197 690.3 402 83.6
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 1.5e-196 689.5 402 81.3
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 1.5e-196 689.5 402 82.8
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 2.6e-196 688.7 402 82.1
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 2.6e-196 688.7 402 82.1
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 2.6e-196 688.7 402 82.1
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 2.6e-196 688.7 402 81.6
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 3.4e-196 688.3 402 81.8
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 3.4e-196 688.3 402 81.8
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 3.4e-196 688.3 402 82.6
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 4.5e-196 688.0 402 82.6
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 5.9e-196 687.6 417 80.6
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 7.7e-196 687.2 402 82.6
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 1.0e-195 686.8 402 82.6
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 1.3e-195 686.4 402 81.8
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 1.3e-195 686.4 402 81.8
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 2.2e-195 685.6 402 81.1
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 2.2e-195 685.6 402 80.8
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 3.8e-195 684.9 402 81.6
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 3.8e-195 684.9 402 81.6
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 3.8e-195 684.9 402 81.6
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 3.8e-195 684.9 402 82.1
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 6.5e-195 684.1 402 81.6
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 6.5e-195 684.1 416 80.3
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 6.5e-195 684.1 438 77.6
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 1.1e-194 683.3 402 81.8
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 1.9e-194 682.6 416 80.0
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 3.2e-194 681.8 402 81.6
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 3.2e-194 681.8 429 77.9
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 7.2e-194 680.6 402 82.6
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 1.6e-193 679.5 402 81.1
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 3.6e-193 678.3 419 80.7
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 4.7e-193 677.9 402 81.1
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 6.1e-193 677.6 402 80.6
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 6.1e-193 677.6 402 81.1
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 4.4e-191 671.4 397 80.9
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 4.8e-190 667.9 402 80.6
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 1.1e-189 666.8 402 78.4
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 2.4e-189 665.6 402 80.6
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 2.4e-189 665.6 402 78.9
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 5.9e-188 661.0 400 79.0
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 3.8e-187 658.3 441 74.8
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 1.4e-184 649.8 402 77.6
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 8.8e-184 647.1 402 79.4
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 2.8e-182 642.1 402 76.1
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 2.0e-180 636.0 376 81.4
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 1.1e-178 630.2 402 77.9
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 1.5e-178 629.8 402 74.4
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 2.5e-178 629.0 401 75.6
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 2.1e-177 625.9 366 82.0
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 4.0e-176 621.7 402 76.6
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 6.8e-176 620.9 360 82.5
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 2.8e-174 615.5 362 83.4
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 1.7e-171 606.3 404 72.0
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 1.5e-167 593.2 402 71.4
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 2.6e-167 592.4 402 69.7
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 5.7e-167 591.3 402 70.9
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 2.7e-164 582.4 335 83.6
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.7e-163 579.7 403 68.5
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 3.8e-163 578.6 341 82.1
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 2.5e-162 575.9 403 68.7
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 1.2e-159 567.0 402 71.1
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 5.7e-159 564.7 402 68.2
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 2.0e-156 556.2 404 65.8
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 7.5e-151 537.7 398 65.3
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 1.9e-146 523.1 259 99.2
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 3.9e-139 498.8 403 64.5
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 1.6e-137 493.4 289 82.4
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 1.6e-129 466.8 402 61.4
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 4.0e-128 462.2 419 59.2
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 3.5e-124 449.1 229 97.8
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 3.1e-120 436.0 395 53.9
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 6.7e-115 418.3 396 53.3
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 4.9e-110 402.1 277 72.2
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 3.3e-90 336.3 219 76.7
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 4.3e-90 335.9 219 75.8
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 7.4e-90 335.1 219 75.3
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 3.6e-76 289.7 160 85.6
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 4.7e-76 289.3 301 50.5
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 3.8e-70 269.6 163 80.4
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 6.6e-54 215.7 116 87.9
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 4.9e-33 146.4 353 28.9
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 1.0e-30 138.7 86 76.7
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 1.7e-30 137.9 351 29.3
Actinidia06949 Actinidia chinensis HOM05D004400 ORTHO05D005479 3.2e-16 90.5 47 87.2
Ah.08g223290 Amaranthus hybridus HOM05D004400 ORTHO05D005479 9.6e-13 79.0 44 75.0
Peaxi162Scf00234g00513 Petunia axillaris HOM05D004400 ORTHO05D306043 2.1e-12 77.8 72 58.3
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 8.1e-12 75.9 317 23.3
Pp3s34_170 Physcomitrium patens HOM05D000068 ORTHO05D011688 3.0e-06 57.4 358 21.2


User provided reference genes

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