Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 2.4e-254 881.7 463 100.0
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 8.5e-199 697.2 484 77.1
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 3.6e-165 585.5 420 68.6
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 2.0e-160 569.7 416 67.5
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 2.3e-159 566.2 424 67.9
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 5.6e-158 561.6 415 68.9
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 5.6e-158 561.6 415 68.7
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 9.5e-158 560.8 417 67.9
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 2.1e-157 559.7 415 69.4
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 8.9e-156 554.3 413 67.6
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.5e-155 553.5 424 65.1
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 3.4e-155 552.4 421 66.7
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 9.8e-155 550.8 412 67.5
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 2.2e-154 549.7 426 66.0
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 2.9e-154 549.3 410 66.8
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 4.9e-154 548.5 382 70.9
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 6.4e-154 548.1 424 66.5
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 8.3e-154 547.7 386 69.4
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 3.2e-153 545.8 384 70.1
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 5.4e-153 545.0 409 68.2
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 4.6e-152 542.0 427 63.5
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 7.8e-152 541.2 413 66.3
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 7.8e-152 541.2 417 65.0
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 1.0e-151 540.8 394 68.5
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 1.3e-151 540.4 428 65.7
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 1.7e-151 540.0 408 66.9
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 1.7e-151 540.0 385 68.6
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 1.7e-151 540.0 413 66.6
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 1.7e-151 540.0 407 67.8
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 1.7e-151 540.0 407 67.8
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 1.7e-151 540.0 383 68.9
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 2.3e-151 539.7 410 65.9
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 2.3e-151 539.7 412 65.3
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 2.3e-151 539.7 430 65.1
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 2.3e-151 539.7 383 69.2
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 3.0e-151 539.3 411 65.9
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 3.0e-151 539.3 384 68.8
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 3.9e-151 538.9 424 64.6
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 5.1e-151 538.5 412 66.7
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 5.1e-151 538.5 373 70.5
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 6.6e-151 538.1 428 64.5
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 8.6e-151 537.7 393 67.9
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 8.6e-151 537.7 410 65.9
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 1.1e-150 537.3 410 65.6
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 1.1e-150 537.3 428 64.5
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 1.5e-150 537.0 410 65.6
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 1.5e-150 537.0 397 67.0
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 1.9e-150 536.6 410 65.6
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 1.9e-150 536.6 404 66.6
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 3.3e-150 535.8 385 69.1
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 5.6e-150 535.0 410 65.4
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 5.6e-150 535.0 426 64.1
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 5.6e-150 535.0 410 64.4
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 5.6e-150 535.0 386 68.7
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 5.6e-150 535.0 434 63.4
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 5.6e-150 535.0 410 65.4
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 5.6e-150 535.0 384 68.2
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 5.6e-150 535.0 420 63.3
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 7.3e-150 534.6 419 64.4
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 7.3e-150 534.6 410 65.4
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 7.3e-150 534.6 480 58.3
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 9.5e-150 534.3 409 66.3
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 9.5e-150 534.3 410 65.4
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 9.5e-150 534.3 410 65.1
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 1.2e-149 533.9 419 64.9
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 1.2e-149 533.9 410 64.1
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 1.6e-149 533.5 428 63.6
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 1.6e-149 533.5 411 64.7
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 2.1e-149 533.1 395 67.8
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 2.1e-149 533.1 412 65.3
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 2.1e-149 533.1 411 65.7
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 2.8e-149 532.7 410 64.6
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 4.7e-149 531.9 431 63.8
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 6.2e-149 531.6 478 58.4
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 6.2e-149 531.6 386 67.1
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 8.1e-149 531.2 392 66.8
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.1e-148 530.8 418 64.4
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 1.1e-148 530.8 393 66.4
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.8e-148 530.0 418 64.4
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 2.3e-148 529.6 409 65.3
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 3.1e-148 529.3 416 65.1
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 4.0e-148 528.9 427 63.7
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 5.2e-148 528.5 394 67.3
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 5.2e-148 528.5 390 66.4
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 5.2e-148 528.5 424 63.7
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 6.8e-148 528.1 411 64.7
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 8.9e-148 527.7 421 62.2
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 8.9e-148 527.7 418 64.1
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 8.9e-148 527.7 383 67.1
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 8.9e-148 527.7 421 64.4
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 1.5e-147 526.9 377 68.7
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 1.5e-147 526.9 385 68.6
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 2.0e-147 526.6 393 66.2
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 2.6e-147 526.2 405 65.9
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 3.4e-147 525.8 405 65.9
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 4.4e-147 525.4 405 65.9
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 5.8e-147 525.0 405 65.7
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 7.6e-147 524.6 405 65.7
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 1.7e-146 523.5 393 65.4
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 1.7e-146 523.5 426 63.1
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 6.4e-146 521.5 409 64.3
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 7.1e-145 518.1 385 67.5
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 2.1e-144 516.5 480 57.3
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 2.7e-144 516.2 379 66.2
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 2.7e-144 516.2 409 65.0
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 5.2e-140 501.9 356 67.4
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 4.2e-137 492.3 392 61.5
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 2.1e-136 490.0 359 68.8
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 4.9e-130 468.8 399 61.9
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 1.9e-129 466.8 355 63.9
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 9.6e-126 454.5 426 58.2
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 4.2e-121 439.1 368 58.2
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 2.1e-120 436.8 419 53.5
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 5.1e-119 432.2 365 61.4
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 6.2e-117 425.2 403 53.8
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 5.3e-116 422.2 367 56.7
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 8.4e-114 414.8 277 70.8
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 1.4e-113 414.1 343 61.8
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 3.5e-112 409.5 273 71.1
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.3e-111 407.5 330 62.4
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 2.8e-101 373.2 411 50.9
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 6.9e-100 368.6 276 64.5
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 2.2e-90 337.0 272 62.5
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 1.9e-89 334.0 382 47.9
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 6.1e-88 328.9 243 65.4
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 6.1e-88 328.9 273 61.9
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 6.7e-87 325.5 227 71.4
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 1.1e-86 324.7 211 74.4
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 2.8e-85 320.1 358 48.3
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 3.7e-85 319.7 252 61.9
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 7.0e-84 315.5 236 65.7
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.1e-81 308.1 324 51.9
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 1.5e-81 307.8 278 59.0
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 4.2e-81 306.2 331 47.4
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 2.6e-78 297.0 198 70.7
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 1.9e-73 280.8 226 61.9
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 5.9e-67 259.2 177 70.1
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 1.7e-66 257.7 206 61.2
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 5.4e-52 209.5 354 39.0
Atru.chr2.2696 Acer truncatum HOM05D004538 ORTHO05D006068 5.9e-51 206.1 136 72.8
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 8.0e-48 195.7 184 56.0
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 7.8e-43 179.1 291 38.1
SHI05856 Sapria himalayana HOM05D004538 ORTHO05D006068 6.6e-42 176.0 133 67.7
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 8.1e-40 169.1 191 50.3
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 5.2e-39 166.4 124 62.9
Atru.chr2.2627 Acer truncatum HOM05D000397 ORTHO05D002023 1.3e-29 135.2 110 65.5
Duzib268G1762 Durio zibethinus HOM05D004538 ORTHO05D006068 2.2e-29 134.4 115 60.9
MSTRG.9065 Avicennia marina HOM05D004538 ORTHO05D006068 1.9e-28 131.3 90 71.1
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 7.1e-28 129.4 106 61.3
MSTRG.9077 Avicennia marina HOM05D004538 ORTHO05D006068 1.4e-23 115.2 77 74.0
ATR0499G006 Amborella trichopoda HOM05D004538 ORTHO05D066479 1.2e-22 112.1 123 53.7
Atru.chr2.2679 Acer truncatum HOM05D004538 ORTHO05D052265 4.6e-19 100.1 92 58.7
QL10p039376 Quercus lobata HOM05D004538 ORTHO05D006068 1.1e-17 95.5 86 57.0
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 9.6e-17 92.4 85 55.3
Cc02_g29820 Coffea canephora HOM05D004538 ORTHO05D006068 9.9e-14 82.4 68 57.4
ATR0499G019 Amborella trichopoda HOM05D004538 ORTHO05D006068 1.3e-13 82.0 58 56.9
MD02G1271500 Malus domestica HOM05D004538 ORTHO05D006068 1.9e-12 78.2 60 71.7
QL02p081848 Quercus lobata HOM05D007814 ORTHO05D009902 2.4e-12 77.8 50 66.0
RcHm_v2.0_Chr6g0267421 Rosa chinensis HOM05D004538 ORTHO05D006068 1.6e-11 75.1 60 66.7
Atru.chr2.2641 Acer truncatum HOM05D004538 ORTHO05D052874 2.1e-08 64.7 44 65.9
Oeu026585.1 Olea europaea HOM05D004538 ORTHO05D289065 4.5e-06 57.0 199 24.1


User provided reference genes

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