Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb033510 Zea mays HOM05D000181 ORTHO05D051634 1.4e-63 246.1 122 100.0
Zm00001eb269410 Zea mays HOM05D000181 ORTHO05D051634 2.6e-62 241.9 122 98.4
Zm00001eb351270 Zea mays HOM05D000181 ORTHO05D003134 3.4e-46 188.3 95 97.9
Os05g0458400 Oryza sativa ssp. japonica HOM05D000181 ORTHO05D003134 9.2e-36 153.7 92 79.3
HPP92_000807 Vanilla planifolia HOM05D000181 ORTHO05D003134 4.0e-23 111.7 94 56.4
MBI05_g28373_MAGBIO Magnolia biondii HOM05D000181 ORTHO05D003134 3.8e-21 105.1 91 58.2
Nn2g13391 Nelumbo nucifera HOM05D000181 ORTHO05D003134 4.2e-20 101.7 96 53.1
TAR369G0431 Trochodendron aralioides HOM05D000181 ORTHO05D003134 9.3e-20 100.5 94 56.4
CANSAT54G0527 Cannabis sativa HOM05D000181 ORTHO05D003134 1.2e-19 100.1 94 55.3
Nn2g11151 Nelumbo nucifera HOM05D000181 ORTHO05D003134 1.2e-19 100.1 96 54.2
PGR102G0952 Punica granatum HOM05D000181 ORTHO05D003134 2.7e-19 99.0 94 55.3
Hma1.2p1_0757F.1_g213270 Hydrangea macrophylla HOM05D000181 ORTHO05D003134 3.5e-19 98.6 94 54.3
GSVIVG01024927001 Vitis vinifera HOM05D000181 ORTHO05D003134 1.0e-18 97.1 94 55.3
CiPaw.13G091400 Carya illinoinensis HOM05D000181 ORTHO05D003134 2.3e-18 95.9 90 54.4
QL01p030988 Quercus lobata HOM05D000181 ORTHO05D003134 2.3e-18 95.9 94 54.3
Dinv06262 Davidia involucrata HOM05D000181 ORTHO05D003134 6.6e-18 94.4 94 52.1
DCAR_007438 Daucus carota HOM05D000181 ORTHO05D003134 8.7e-18 94.0 95 50.5
Actinidia23925 Actinidia chinensis HOM05D000181 ORTHO05D003134 2.5e-17 92.4 94 53.2
Manes.01G171200 Manihot esculenta HOM05D000181 ORTHO05D003134 2.5e-17 92.4 94 53.2
Haze_24129 Corylus avellana HOM05D000181 ORTHO05D003134 3.3e-17 92.0 94 54.3
Cfa011524 Carpinus fangiana HOM05D000181 ORTHO05D003134 7.3e-17 90.9 94 54.3
Ah.08g219760 Amaranthus hybridus HOM05D000181 ORTHO05D003134 2.1e-16 89.4 97 54.6
RcHm_v2.0_Chr5g0065851 Rosa chinensis HOM05D000181 ORTHO05D003134 2.1e-16 89.4 94 53.2
Sopen10g035930 Solanum pennellii HOM05D000181 ORTHO05D003134 2.8e-16 89.0 87 58.6
Cc01_g13140 Coffea canephora HOM05D000181 ORTHO05D003134 3.6e-16 88.6 95 50.5
FvH4_3g36790 Fragaria vesca HOM05D000181 ORTHO05D003134 3.6e-16 88.6 94 54.3
FAN11G3739 Fragaria x ananassa HOM05D000181 ORTHO05D003134 3.6e-16 88.6 94 54.3
FAN16G3230 Fragaria x ananassa HOM05D000181 ORTHO05D003134 3.6e-16 88.6 94 54.3
FAN25G3587 Fragaria x ananassa HOM05D000181 ORTHO05D003134 3.6e-16 88.6 94 54.3
CSS0008560 Camellia sinensis var. sinensis HOM05D000181 ORTHO05D003134 4.8e-16 88.2 94 48.9
Lj2A1066T67 Lonicera japonica HOM05D000181 ORTHO05D003134 4.8e-16 88.2 95 51.6
Sed0026085 Sechium edule HOM05D000181 ORTHO05D003134 8.1e-16 87.4 130 41.5
Actinidia34421 Actinidia chinensis HOM05D000181 ORTHO05D003134 1.1e-15 87.0 94 50.0
Rhsim01G0230600 Rhododendron simsii HOM05D000181 ORTHO05D003134 1.4e-15 86.7 95 49.5
CiPaw.14G067300 Carya illinoinensis HOM05D000181 ORTHO05D003134 2.4e-15 85.9 95 50.5
Rhsim04G0158400 Rhododendron simsii HOM05D000181 ORTHO05D003134 2.4e-15 85.9 125 43.2
Ah.15g097760 Amaranthus hybridus HOM05D000181 ORTHO05D003134 4.0e-15 85.1 97 52.6
CsaV3_6G016700 Cucumis sativus L. HOM05D000181 ORTHO05D003134 4.0e-15 85.1 94 45.7
Eucgr.B02325 Eucalyptus grandis HOM05D000181 ORTHO05D003134 4.0e-15 85.1 94 52.1
FAN21G0607 Fragaria x ananassa HOM05D000181 ORTHO05D003134 4.0e-15 85.1 94 53.2
Sed0016908 Sechium edule HOM05D000181 ORTHO05D003134 4.0e-15 85.1 133 41.4
VMungo1127G1333 Vigna mungo HOM05D000181 ORTHO05D003134 4.0e-15 85.1 96 51.0
arahy.Tifrunner.gnm1.ann1.0Y9XYY Arachis hypogaea HOM05D000181 ORTHO05D003134 5.3e-15 84.7 96 46.9
Eucgr.B02324 Eucalyptus grandis HOM05D000181 ORTHO05D003134 6.9e-15 84.3 90 53.3
Glyma.12G061200 Glycine max HOM05D000181 ORTHO05D003134 6.9e-15 84.3 95 48.4
MELO3C025899.2 Cucumis melo HOM05D000181 ORTHO05D003134 9.0e-15 84.0 94 45.7
CSS0020099 Camellia sinensis var. sinensis HOM05D000181 ORTHO05D003134 1.2e-14 83.6 94 46.8
CSS0033381 Camellia sinensis var. sinensis HOM05D000181 ORTHO05D003134 1.2e-14 83.6 94 46.8
CDE08G0036 Ceratophyllum demersum HOM05D000181 ORTHO05D003134 1.2e-14 83.6 97 45.4
Solyc10g086550.2 Solanum lycopersicum HOM05D000181 ORTHO05D003134 1.2e-14 83.6 88 58.0
Lj3g0008176 Lotus japonicus HOM05D000181 ORTHO05D003134 1.5e-14 83.2 97 50.5
CSS0038960 Camellia sinensis var. sinensis HOM05D000181 ORTHO05D003134 2.0e-14 82.8 90 48.9
MBI14_g12126_MAGBIO Magnolia biondii HOM05D000181 ORTHO05D003134 2.0e-14 82.8 94 51.1
Cc06_g02500 Coffea canephora HOM05D000181 ORTHO05D003134 2.6e-14 82.4 94 46.8
PSO339G6640 Papaver somniferum HOM05D000181 ORTHO05D003134 2.6e-14 82.4 108 46.3
Eucgr.B02323 Eucalyptus grandis HOM05D000181 ORTHO05D003134 3.4e-14 82.0 94 51.1
PSO063G1802 Papaver somniferum HOM05D000181 ORTHO05D003134 4.5e-14 81.6 108 45.4
MSTRG.17825 Avicennia marina HOM05D000181 ORTHO05D003134 1.3e-13 80.1 94 44.7
Solyc09g010950.3 Solanum lycopersicum HOM05D000181 ORTHO05D003134 1.3e-13 80.1 90 51.1
Sopen09g005670 Solanum pennellii HOM05D000181 ORTHO05D003134 1.3e-13 80.1 90 51.1
Aqoxy1G00907 Aquilegia oxysepala HOM05D000181 ORTHO05D003134 2.2e-13 79.3 94 42.6
Sc21g0005930 Simmondsia chinensis HOM05D000181 ORTHO05D003134 2.2e-13 79.3 95 46.3
MD11G1097400 Malus domestica HOM05D000181 ORTHO05D003134 2.9e-13 79.0 94 47.9
Actinidia13153 Actinidia chinensis HOM05D000181 ORTHO05D003134 3.8e-13 78.6 90 46.7
Os01g0842600 Oryza sativa ssp. japonica HOM05D000181 ORTHO05D003134 3.8e-13 78.6 90 46.7
Peaxi162Scf00330g00714 Petunia axillaris HOM05D000181 ORTHO05D003134 3.8e-13 78.6 87 55.2
CAN.G92.15 Capsicum annuum HOM05D000181 ORTHO05D003134 4.9e-13 78.2 84 56.0
QL07p048749 Quercus lobata HOM05D000181 ORTHO05D003134 8.4e-13 77.4 90 48.9
Glyma.11G137700 Glycine max HOM05D000181 ORTHO05D003134 1.1e-12 77.0 96 45.8
PGSC0003DMG400008828 Solanum tuberosum HOM05D000181 ORTHO05D003134 1.1e-12 77.0 90 50.0
Nitab4.5_0000527g0220 Nicotiana tabacum HOM05D000181 ORTHO05D003134 1.4e-12 76.6 90 54.4
Phvul.011G162000 Phaseolus vulgaris HOM05D000181 ORTHO05D003134 1.4e-12 76.6 96 44.8
Nitab4.5_0014770g0010 Nicotiana tabacum HOM05D000181 ORTHO05D003134 1.9e-12 76.3 90 54.4
AUR62009544 Chenopodium quinoa HOM05D000181 ORTHO05D003134 2.4e-12 75.9 97 49.5
MD03G1088300 Malus domestica HOM05D000181 ORTHO05D003134 2.4e-12 75.9 94 45.7
Atru.chr8.1994 Acer truncatum HOM05D000181 ORTHO05D019414 5.4e-12 74.7 90 53.3
TWI31G1224 Tripterygium wilfordii HOM05D000181 ORTHO05D003134 5.4e-12 74.7 95 49.5
Prupe.6G072600 Prunus persica HOM05D000181 ORTHO05D003134 7.1e-12 74.3 94 44.7
Medtr4g064350 Medicago truncatula HOM05D000181 ORTHO05D003134 9.3e-12 73.9 95 44.2
TPR.G23594 Trifolium pratense HOM05D000181 ORTHO05D003134 9.3e-12 73.9 95 45.3
CiPaw.10G146600 Carya illinoinensis HOM05D000181 ORTHO05D003134 1.2e-11 73.6 90 48.9
Ca_19157_v3 Cicer arietinum L. HOM05D000181 ORTHO05D003134 1.2e-11 73.6 93 46.2
Haze_20815 Corylus avellana HOM05D000181 ORTHO05D003134 1.2e-11 73.6 90 48.9
Oeu001862.1 Olea europaea HOM05D000181 ORTHO05D003134 1.2e-11 73.6 94 45.7
EL10Ac7g16046 Beta vulgaris HOM05D000181 ORTHO05D003134 1.6e-11 73.2 96 47.9
AUR62001758 Chenopodium quinoa HOM05D000181 ORTHO05D003134 2.1e-11 72.8 96 47.9
Glyma.12G061400 Glycine max HOM05D000181 ORTHO05D003134 2.1e-11 72.8 95 43.2
Lalb_Chr19g0137901 Lupinus albus HOM05D000181 ORTHO05D003134 2.1e-11 72.8 96 50.0
Thecc.05G037300 Theobroma cacao HOM05D000181 ORTHO05D003134 2.1e-11 72.8 90 47.8
THA.LOC104815783 Tarenaya hassleriana HOM05D000181 ORTHO05D003134 3.5e-11 72.0 126 42.1
Ciclev10027837m.g Citrus clementina HOM05D000181 ORTHO05D003134 7.9e-11 70.9 95 45.3
Hund04937 Selenicereus undatus HOM05D000181 ORTHO05D003134 7.9e-11 70.9 98 44.9
Hma1.2p1_0615F.1_g189800 Hydrangea macrophylla HOM05D000181 ORTHO05D003134 1.0e-10 70.5 94 42.6
Dinv37160 Davidia involucrata HOM05D000181 ORTHO05D003134 1.3e-10 70.1 97 44.3
MSTRG.5654 Avicennia marina HOM05D000181 ORTHO05D003134 1.8e-10 69.7 94 42.6
Lalb_Chr01g0003541 Lupinus albus HOM05D000181 ORTHO05D003134 1.8e-10 69.7 84 53.6
TWI79G0215 Tripterygium wilfordii HOM05D000181 ORTHO05D003134 1.8e-10 69.7 111 43.2
HanXRQChr12g0374231 Helianthus annuus HOM05D000181 ORTHO05D003134 2.3e-10 69.3 92 50.0
Psat7g209680 Pisum sativum HOM05D000181 ORTHO05D003134 2.3e-10 69.3 94 44.7
BraA09t41974Z Brassica rapa HOM05D000181 ORTHO05D003134 3.9e-10 68.6 95 45.3
ATR0686G213 Amborella trichopoda HOM05D000181 ORTHO05D003134 5.1e-10 68.2 91 44.0
MD04G1130900 Malus domestica HOM05D000181 ORTHO05D003134 5.1e-10 68.2 90 45.6
Nitab4.5_0000705g0160 Nicotiana tabacum HOM05D000181 ORTHO05D003134 5.1e-10 68.2 90 47.8
Nitab4.5_0009302g0010 Nicotiana tabacum HOM05D000181 ORTHO05D003134 5.1e-10 68.2 90 47.8
BcaC07g42473 Brassica carinata HOM05D000181 ORTHO05D003134 6.7e-10 67.8 92 44.6
AL1G17690 Arabidopsis lyrata HOM05D000181 ORTHO05D003134 8.7e-10 67.4 96 42.7
Peaxi162Scf00165g00821 Petunia axillaris HOM05D000181 ORTHO05D003134 1.1e-09 67.0 83 48.2
Potri.016G099800 Populus trichocarpa HOM05D000181 ORTHO05D003134 1.1e-09 67.0 90 44.4
BcaB06g28273 Brassica carinata HOM05D000181 ORTHO05D003134 1.5e-09 66.6 88 46.6
Migut.J00319 Erythranthe guttata HOM05D000181 ORTHO05D003134 1.5e-09 66.6 95 44.2
DCAR_010405 Daucus carota HOM05D000181 ORTHO05D003134 2.5e-09 65.9 90 44.4
TWI74G0890 Tripterygium wilfordii HOM05D000181 ORTHO05D003134 2.5e-09 65.9 91 45.1
Thhalv10006814m.g Eutrema salsugineum HOM05D000181 ORTHO05D003134 4.3e-09 65.1 98 42.9
RcHm_v2.0_Chr3g0466351 Rosa chinensis HOM05D000181 ORTHO05D003134 4.3e-09 65.1 89 48.3
A04p22090 Brassica napus HOM05D000181 ORTHO05D003134 5.6e-09 64.7 89 47.2
AT1G07510 Arabidopsis thaliana HOM05D000181 ORTHO05D003134 7.4e-09 64.3 94 41.5
THA.LOC104800676 Tarenaya hassleriana HOM05D000181 ORTHO05D003134 7.4e-09 64.3 96 43.8
vmacro03045 Vaccinium macrocarpon HOM05D000181 ORTHO05D003134 7.4e-09 64.3 106 40.6
Atru.chr3.3973 Acer truncatum HOM05D000181 ORTHO05D003134 9.6e-09 63.9 95 42.1
Carub.0001s0683 Capsella rubella HOM05D000181 ORTHO05D003134 1.3e-08 63.5 96 41.7
Lsat_1_v5_gn_5_154920 Lactuca sativa HOM05D000181 ORTHO05D003134 1.6e-08 63.2 83 45.8
C04p58190 Brassica napus HOM05D000181 ORTHO05D003134 2.8e-08 62.4 89 46.1
MELO3C003139.2 Cucumis melo HOM05D000181 ORTHO05D003134 3.7e-08 62.0 92 44.6
HanXRQChr01g0003301 Helianthus annuus HOM05D000181 ORTHO05D003134 3.7e-08 62.0 94 37.2
Gohir.A01G221800 Gossypium hirsutum HOM05D000181 ORTHO05D003134 4.8e-08 61.6 88 44.3
CARHR007280 Cardamine hirsuta HOM05D000181 ORTHO05D003134 6.2e-08 61.2 96 40.6
Ciclev10011087m.g Citrus clementina HOM05D000181 ORTHO05D003134 6.2e-08 61.2 90 44.4
Gorai.002G257200 Gossypium raimondii HOM05D000181 ORTHO05D003134 6.2e-08 61.2 88 44.3
Gohir.D01G211400 Gossypium hirsutum HOM05D000181 ORTHO05D003134 1.1e-07 60.5 88 44.3
Prupe.6G257400 Prunus persica HOM05D000181 ORTHO05D003134 1.1e-07 60.5 94 40.4
Phvul.011G062800 Phaseolus vulgaris HOM05D000181 ORTHO05D003134 1.8e-07 59.7 95 40.0
SGA_v2.0_scaffold126G33774 Striga asiatica HOM05D000181 ORTHO05D003134 1.8e-07 59.7 97 38.1
AT2G29080 Arabidopsis thaliana HOM05D000181 ORTHO05D003134 2.4e-07 59.3 90 43.3
ECA247G0932 Erigeron canadensis HOM05D000181 ORTHO05D003134 2.4e-07 59.3 96 42.7
ClCG02G020010 Citrullus lanatus HOM05D000181 ORTHO05D003134 3.1e-07 58.9 94 38.3
AL4G23650 Arabidopsis lyrata HOM05D000181 ORTHO05D003134 5.3e-07 58.2 90 42.2
CsaV3_4G025100 Cucumis sativus L. HOM05D000181 ORTHO05D003134 6.9e-07 57.8 108 38.0
vmacro08645 Vaccinium macrocarpon HOM05D000181 ORTHO05D003134 6.9e-07 57.8 58 50.0
vmacro14548 Vaccinium macrocarpon HOM05D000181 ORTHO05D003134 9.0e-07 57.4 151 29.1
Migut.N00898 Erythranthe guttata HOM05D000181 ORTHO05D003134 1.2e-06 57.0 88 39.8
Sabra16G0101000 Salix brachista HOM05D000181 ORTHO05D003134 2.6e-06 55.8 122 32.0
Manes.09G092500 Manihot esculenta HOM05D000181 ORTHO05D003134 5.8e-06 54.7 99 37.4
BraA04t17773Z Brassica rapa HOM05D000181 ORTHO05D003134 1.0e-05 53.9 74 48.6
FAN05G5381 Fragaria x ananassa HOM05D000181 ORTHO05D003134 1.0e-05 53.9 81 46.9
FAN09G3297 Fragaria x ananassa HOM05D000181 ORTHO05D003134 1.0e-05 53.9 81 46.9


User provided reference genes

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