Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb033290 Zea mays HOM05D003389 ORTHO05D003917 2.2e-137 492.3 246 100.0
Zm00001eb033330 Zea mays HOM05D024566 ORTHO05D020930 1.4e-30 137.5 68 95.6
Os06g0712400 Oryza sativa ssp. japonica HOM05D003389 ORTHO05D003917 3.1e-22 109.8 194 34.0
Gorai.007G022100 Gossypium raimondii HOM05D003389 ORTHO05D003917 1.5e-21 107.5 188 34.6
Zm00001eb227790 Zea mays HOM05D003389 ORTHO05D003917 2.0e-21 107.1 167 36.5
Hund11535 Selenicereus undatus HOM05D003389 ORTHO05D003917 3.4e-21 106.3 192 34.4
PGSC0003DMG400022735 Solanum tuberosum HOM05D003389 ORTHO05D003917 3.4e-21 106.3 209 31.1
Thhalv10028490m.g Eutrema salsugineum HOM05D003389 ORTHO05D003917 4.5e-21 105.9 191 35.1
Sp6g05610 Schrenkiella parvula HOM05D003389 ORTHO05D003917 4.5e-21 105.9 197 34.0
AUR62017315 Chenopodium quinoa HOM05D003389 ORTHO05D003917 5.8e-21 105.5 191 36.1
Gohir.D11G020800 Gossypium hirsutum HOM05D003389 ORTHO05D003917 5.8e-21 105.5 197 33.5
HanXRQChr11g0336621 Helianthus annuus HOM05D003389 ORTHO05D003917 5.8e-21 105.5 203 33.0
Aa31LG9G10590 Aethionema arabicum HOM05D003389 ORTHO05D003917 7.6e-21 105.1 218 33.5
CDE04G0877 Ceratophyllum demersum HOM05D003389 ORTHO05D003917 7.6e-21 105.1 202 33.2
Gohir.A11G021100 Gossypium hirsutum HOM05D003389 ORTHO05D003917 7.6e-21 105.1 188 34.0
Nitab4.5_0008362g0010 Nicotiana tabacum HOM05D003389 ORTHO05D003917 9.9e-21 104.8 209 33.0
Sopen08g028470 Solanum pennellii HOM05D003389 ORTHO05D003917 9.9e-21 104.8 209 31.1
Atru.chr9.1507 Acer truncatum HOM05D003389 ORTHO05D003917 1.3e-20 104.4 172 34.3
AT4G11860 Arabidopsis thaliana HOM05D003389 ORTHO05D003917 1.3e-20 104.4 191 35.1
AUR62010575 Chenopodium quinoa HOM05D003389 ORTHO05D003917 1.3e-20 104.4 191 36.1
Aqoxy5G03952 Aquilegia oxysepala HOM05D003389 ORTHO05D003917 1.7e-20 104.0 206 34.0
BcaC04g21168 Brassica carinata HOM05D003389 ORTHO05D003917 1.7e-20 104.0 168 35.1
C09p34580 Brassica napus HOM05D003389 ORTHO05D003917 1.7e-20 104.0 168 35.1
BolC9t56305H Brassica oleracea HOM05D003389 ORTHO05D003917 1.7e-20 104.0 168 35.1
Gohir.A08G177400 Gossypium hirsutum HOM05D003389 ORTHO05D003917 1.7e-20 104.0 196 35.7
Oeu001902.1 Olea europaea HOM05D003389 ORTHO05D003917 1.7e-20 104.0 190 34.2
SGA_v2.0_scaffold286G47125 Striga asiatica HOM05D003389 ORTHO05D003917 1.7e-20 104.0 187 34.8
CANSAT21G1884 Cannabis sativa HOM05D003389 ORTHO05D003917 2.2e-20 103.6 189 33.3
Carub.0006s3095 Capsella rubella HOM05D003389 ORTHO05D003917 2.2e-20 103.6 161 37.9
ECA233G2019 Erigeron canadensis HOM05D003389 ORTHO05D003917 2.2e-20 103.6 165 34.5
CARHR254440 Cardamine hirsuta HOM05D003389 ORTHO05D003917 2.9e-20 103.2 161 37.3
Lj2g0004762 Lotus japonicus HOM05D003389 ORTHO05D003917 2.9e-20 103.2 169 35.5
BraA09t38293Z Brassica rapa HOM05D003389 ORTHO05D003917 3.8e-20 102.8 162 35.8
CSS0021110 Camellia sinensis var. sinensis HOM05D003389 ORTHO05D003917 3.8e-20 102.8 205 31.2
Manes.02G030300 Manihot esculenta HOM05D003389 ORTHO05D003917 3.8e-20 102.8 187 33.7
Nn6g34315 Nelumbo nucifera HOM05D003389 ORTHO05D003917 3.8e-20 102.8 189 33.3
A09p27250 Brassica napus HOM05D003389 ORTHO05D003917 4.9e-20 102.4 162 35.8
Nn1g01292 Nelumbo nucifera HOM05D003389 ORTHO05D003917 4.9e-20 102.4 201 31.3
TWI15G1193 Tripterygium wilfordii HOM05D003389 ORTHO05D003917 4.9e-20 102.4 191 33.0
GSVIVG01019881001 Vitis vinifera HOM05D003389 ORTHO05D003917 4.9e-20 102.4 189 33.9
Peaxi162Scf00620g00617 Petunia axillaris HOM05D003389 ORTHO05D003917 6.4e-20 102.1 205 31.7
Hund14708 Selenicereus undatus HOM05D003389 ORTHO05D003917 6.4e-20 102.1 229 32.3
EL10Ac5g12710 Beta vulgaris HOM05D003389 ORTHO05D003917 8.4e-20 101.7 203 31.5
Cc08_g13790 Coffea canephora HOM05D003389 ORTHO05D003917 8.4e-20 101.7 190 33.2
Dinv37703 Davidia involucrata HOM05D003389 ORTHO05D003917 8.4e-20 101.7 205 32.2
Duzib068G0926 Durio zibethinus HOM05D003389 ORTHO05D003917 8.4e-20 101.7 159 36.5
PSO478G1498 Papaver somniferum HOM05D003389 ORTHO05D003917 8.4e-20 101.7 201 32.8
BcaB01g01683 Brassica carinata HOM05D003389 ORTHO05D003917 1.1e-19 101.3 168 35.1
PSO782G1906 Papaver somniferum HOM05D003389 ORTHO05D003917 1.1e-19 101.3 201 32.8
Psat2g181120 Pisum sativum HOM05D003389 ORTHO05D003917 1.1e-19 101.3 189 32.8
TWI81G0612 Tripterygium wilfordii HOM05D003389 ORTHO05D003917 1.1e-19 101.3 191 33.5
CAN.G981.56 Capsicum annuum HOM05D003389 ORTHO05D003917 1.4e-19 100.9 190 33.2
Gorai.006G210500 Gossypium raimondii HOM05D003389 ORTHO05D003917 1.4e-19 100.9 188 35.6
Sc07g0009480 Simmondsia chinensis HOM05D003389 ORTHO05D003917 1.4e-19 100.9 163 36.2
HPP92_022000 Vanilla planifolia HOM05D003389 ORTHO05D003917 1.4e-19 100.9 163 34.4
arahy.Tifrunner.gnm1.ann1.18T4MA Arachis hypogaea HOM05D003389 ORTHO05D003917 1.9e-19 100.5 174 36.2
arahy.Tifrunner.gnm1.ann1.HGX6IC Arachis hypogaea HOM05D003389 ORTHO05D003917 1.9e-19 100.5 174 36.2
Dinv39033 Davidia involucrata HOM05D003389 ORTHO05D003917 1.9e-19 100.5 205 31.2
ECA240G1577 Erigeron canadensis HOM05D003389 ORTHO05D003917 1.9e-19 100.5 178 32.6
Gohir.A09G193500 Gossypium hirsutum HOM05D003389 ORTHO05D003917 1.9e-19 100.5 185 35.7
Phvul.002G153200 Phaseolus vulgaris HOM05D003389 ORTHO05D003917 1.9e-19 100.5 161 34.8
SalBow6G3358 Salvia bowleyana HOM05D003389 ORTHO05D003917 1.9e-19 100.5 211 32.2
VMungo1215G1985 Vigna mungo HOM05D003389 ORTHO05D003917 1.9e-19 100.5 160 35.0
Ca_06667_v3 Cicer arietinum L. HOM05D003389 ORTHO05D003917 2.4e-19 100.1 169 34.9
Gohir.D09G187700 Gossypium hirsutum HOM05D003389 ORTHO05D003917 2.4e-19 100.1 185 35.7
THA.LOC104806361 Tarenaya hassleriana HOM05D003389 ORTHO05D003917 2.4e-19 100.1 175 33.7
Ah.12g057800 Amaranthus hybridus HOM05D003389 ORTHO05D003917 3.2e-19 99.8 203 32.5
Gohir.D08G195800 Gossypium hirsutum HOM05D003389 ORTHO05D003917 3.2e-19 99.8 196 35.2
Gorai.004G206500 Gossypium raimondii HOM05D003389 ORTHO05D003917 3.2e-19 99.8 170 35.9
Lsat_1_v5_gn_6_10400 Lactuca sativa HOM05D003389 ORTHO05D003917 3.2e-19 99.8 159 35.8
QL12p016621 Quercus lobata HOM05D003389 ORTHO05D003917 3.2e-19 99.8 189 33.3
CsaV3_5G003350 Cucumis sativus L. HOM05D003389 ORTHO05D003917 4.2e-19 99.4 159 36.5
Eucgr.D01936 Eucalyptus grandis HOM05D003389 ORTHO05D003917 4.2e-19 99.4 174 34.5
Glyma.01G214700 Glycine max HOM05D003389 ORTHO05D003917 4.2e-19 99.4 208 30.8
Glyma.11G027200 Glycine max HOM05D003389 ORTHO05D003917 4.2e-19 99.4 161 34.8
Actinidia05234 Actinidia chinensis HOM05D003389 ORTHO05D003917 5.4e-19 99.0 205 30.2
CiPaw.12G100200 Carya illinoinensis HOM05D003389 ORTHO05D003917 5.4e-19 99.0 159 35.2
Ciclev10019075m.g Citrus clementina HOM05D003389 ORTHO05D003917 5.4e-19 99.0 189 33.9
Migut.E01161 Erythranthe guttata HOM05D003389 ORTHO05D003917 5.4e-19 99.0 200 32.0
Duzib084G0706 Durio zibethinus HOM05D003389 ORTHO05D003917 7.1e-19 98.6 185 35.1
Lalb_Chr09g0324691 Lupinus albus HOM05D003389 ORTHO05D003917 7.1e-19 98.6 177 33.3
THA.LOC104814202 Tarenaya hassleriana HOM05D003389 ORTHO05D003917 9.3e-19 98.2 203 31.0
Sed0009929 Sechium edule HOM05D003389 ORTHO05D003917 1.2e-18 97.8 191 33.0
Manes.01G069600 Manihot esculenta HOM05D003389 ORTHO05D003917 2.1e-18 97.1 189 32.3
Sed0023838 Sechium edule HOM05D003389 ORTHO05D003917 2.7e-18 96.7 159 34.6
HanXRQChr02g0043491 Helianthus annuus HOM05D003389 ORTHO05D003917 3.5e-18 96.3 151 35.1
RcHm_v2.0_Chr7g0199771 Rosa chinensis HOM05D003389 ORTHO05D003917 3.5e-18 96.3 166 33.1
Thecc.03G268500 Theobroma cacao HOM05D003389 ORTHO05D003917 3.5e-18 96.3 159 35.2
Carub.0007s1831 Capsella rubella HOM05D003389 ORTHO05D003917 4.6e-18 95.9 212 32.5
PGR031G2775 Punica granatum HOM05D003389 ORTHO05D003917 4.6e-18 95.9 159 33.3
TAR636G1874 Trochodendron aralioides HOM05D003389 ORTHO05D003917 4.6e-18 95.9 159 34.0
Pp3c12_2860 Physcomitrium patens HOM05D003389 ORTHO05D003917 6.0e-18 95.5 163 35.6
Actinidia14499 Actinidia chinensis HOM05D003389 ORTHO05D003917 7.9e-18 95.1 197 33.5
unitig_699.g19759 Utricularia gibba HOM05D003389 ORTHO05D003917 7.9e-18 95.1 151 35.1
Cfa012079 Carpinus fangiana HOM05D003389 ORTHO05D003917 1.0e-17 94.7 189 31.7
SMO367G0360 Selaginella moellendorffii HOM05D003389 ORTHO05D003917 1.0e-17 94.7 168 33.3
SEGI_34401 Sequoiadendron giganteum HOM05D003389 ORTHO05D003917 1.0e-17 94.7 169 33.7
Duzib205G0992 Durio zibethinus HOM05D003389 ORTHO05D003917 1.3e-17 94.4 159 35.8
MBI11_g05095_MAGBIO Magnolia biondii HOM05D003389 ORTHO05D003917 1.3e-17 94.4 201 30.3
Sabra03G0084000 Salix brachista HOM05D003389 ORTHO05D003917 1.3e-17 94.4 183 32.2
SGA_v2.0_scaffold144G35980 Striga asiatica HOM05D003389 ORTHO05D003917 1.8e-17 94.0 158 34.2
FvH4_5g01250 Fragaria vesca HOM05D003389 ORTHO05D003917 2.3e-17 93.6 159 33.3
FAN04G3242 Fragaria x ananassa HOM05D003389 ORTHO05D003917 2.3e-17 93.6 159 33.3
FAN08G2451 Fragaria x ananassa HOM05D003389 ORTHO05D003917 2.3e-17 93.6 159 33.3
FAN13G0159 Fragaria x ananassa HOM05D003389 ORTHO05D003917 2.3e-17 93.6 159 33.3
FAN18G0817 Fragaria x ananassa HOM05D003389 ORTHO05D003917 2.3e-17 93.6 159 32.7
Medtr5g011090 Medicago truncatula HOM05D003389 ORTHO05D003917 2.3e-17 93.6 190 32.6
Potri.001G112300 Populus trichocarpa HOM05D003389 ORTHO05D003917 2.3e-17 93.6 159 34.6
Potri.003G119800 Populus trichocarpa HOM05D003389 ORTHO05D003917 2.3e-17 93.6 159 34.6
Pp3c17_3230 Physcomitrium patens HOM05D003389 ORTHO05D003917 3.0e-17 93.2 168 34.5
Sp7g21050 Schrenkiella parvula HOM05D003389 ORTHO05D003917 3.9e-17 92.8 166 34.3
CiPaw.11G142600 Carya illinoinensis HOM05D003389 ORTHO05D003917 5.1e-17 92.4 158 34.8
SHI13491 Sapria himalayana HOM05D003389 ORTHO05D003917 5.1e-17 92.4 160 32.5
Prupe.5G088000 Prunus persica HOM05D003389 ORTHO05D003917 6.7e-17 92.0 159 33.3
AT4G22960 Arabidopsis thaliana HOM05D003389 ORTHO05D003917 1.1e-16 91.3 197 32.5
ATR0661G488 Amborella trichopoda HOM05D003389 ORTHO05D003917 1.5e-16 90.9 164 32.9
Mapoly0108s0010 Marchantia polymorpha HOM05D003389 ORTHO05D003917 1.9e-16 90.5 189 29.1
SalBow1G6995 Salvia bowleyana HOM05D003262 ORTHO05D003917 1.9e-16 90.5 139 34.5
RcHm_v2.0_Chr1g0379891 Rosa chinensis HOM05D003389 ORTHO05D003917 2.5e-16 90.1 156 32.1
Sabra01G0085800 Salix brachista HOM05D003389 ORTHO05D003917 4.3e-16 89.4 167 32.9
AL7G30560 Arabidopsis lyrata HOM05D003389 ORTHO05D003917 7.4e-16 88.6 161 33.5
Lsat_1_v5_gn_6_79100 Lactuca sativa HOM05D003389 ORTHO05D003917 7.4e-16 88.6 169 32.0
AagrBONN_evm.TU.Sc2ySwM_228.3893 Anthoceros agrestis HOM05D003389 ORTHO05D003917 9.6e-16 88.2 168 32.7
A01p14230 Brassica napus HOM05D003389 ORTHO05D003917 6.2e-15 85.5 186 31.2
BraA01t01370Z Brassica rapa HOM05D003389 ORTHO05D003917 8.1e-15 85.1 186 31.2
Aa31LG6G5010 Aethionema arabicum HOM05D003389 ORTHO05D003917 1.1e-14 84.7 171 32.7
PSO170G2389 Papaver somniferum HOM05D003389 ORTHO05D003917 1.1e-14 84.7 212 28.8
MD04G1069900 Malus domestica HOM05D003389 ORTHO05D003917 1.4e-14 84.3 134 35.1
Migut.A00905 Erythranthe guttata HOM05D003389 ORTHO05D003917 1.8e-14 84.0 217 29.0
PSO302G0081 Papaver somniferum HOM05D003389 ORTHO05D003917 1.8e-14 84.0 212 28.8
Cpa.g.sc29.33 Carica papaya HOM05D003389 ORTHO05D003917 2.4e-14 83.6 151 33.8
Migut.A00906 Erythranthe guttata HOM05D003389 ORTHO05D003917 6.9e-14 82.0 192 30.7
Thhalv10027519m.g Eutrema salsugineum HOM05D003389 ORTHO05D003917 1.2e-13 81.3 169 29.6
BcaC09g51049 Brassica carinata HOM05D003389 ORTHO05D003917 1.5e-13 80.9 199 29.6
BolC1t01690H Brassica oleracea HOM05D003389 ORTHO05D003917 2.0e-13 80.5 201 30.8
MD06G1071400 Malus domestica HOM05D003389 ORTHO05D003917 2.0e-13 80.5 134 34.3
BcaNung01008 Brassica carinata HOM05D003389 ORTHO05D003917 2.6e-13 80.1 156 34.6
vmacro00214 Vaccinium macrocarpon HOM05D003389 ORTHO05D003917 2.6e-13 80.1 208 29.8
C01p17500 Brassica napus HOM05D003389 ORTHO05D003917 4.5e-13 79.3 194 28.4
CSS0044016 Camellia sinensis var. sinensis HOM05D003389 ORTHO05D003917 7.6e-13 78.6 204 28.9
FAN09G4798 Fragaria x ananassa HOM05D003389 ORTHO05D003917 4.9e-12 75.9 147 31.3
MELO3C005619.2 Cucumis melo HOM05D003389 ORTHO05D003917 1.4e-11 74.3 156 31.4
Lj2C201G3 Lonicera japonica HOM05D003389 ORTHO05D003917 1.9e-11 73.9 159 30.8
HanXRQChr02g0043501 Helianthus annuus HOM05D003389 ORTHO05D003917 4.2e-11 72.8 173 28.9
Os06g0721600 Oryza sativa ssp. japonica HOM05D003389 ORTHO05D020930 9.3e-11 71.6 157 31.8
Os06g0723400 Oryza sativa ssp. japonica HOM05D003389 ORTHO05D020930 9.3e-11 71.6 157 31.8
DCAR_008431 Daucus carota HOM05D003389 ORTHO05D003917 6.0e-10 68.9 129 29.5
TAR636G3266 Trochodendron aralioides HOM05D003389 ORTHO05D003917 6.0e-10 68.9 127 33.9
Haze_08980 Corylus avellana HOM05D003389 ORTHO05D003917 1.0e-09 68.2 175 30.3
BraA03t14599Z Brassica rapa HOM05D003389 ORTHO05D003917 1.3e-09 67.8 173 30.6
BraA03t14615Z Brassica rapa HOM05D003389 ORTHO05D003917 1.3e-09 67.8 173 30.6
PRCOL_00006333 Prasinoderma coloniale HOM05D003389 ORTHO05D003917 1.8e-09 67.4 165 30.3
Glyma.04G257602 Glycine max HOM05D003389 ORTHO05D003917 2.3e-09 67.0 130 31.5
Nitab4.5_0001714g0090 Nicotiana tabacum HOM05D003389 ORTHO05D003917 2.3e-09 67.0 180 29.4
CDE12G0774 Ceratophyllum demersum HOM05D003389 ORTHO05D003917 3.9e-09 66.2 118 33.9
Cre06.g304850 Chlamydomonas reinhardtii HOM05D003389 ORTHO05D003917 5.1e-09 65.9 160 31.9
SGA_v2.0_scaffold555G52910 Striga asiatica HOM05D024566 ORTHO05D020930 5.1e-09 65.9 124 35.5
Glyma.03G264902 Glycine max HOM05D003389 ORTHO05D003917 1.9e-08 63.9 130 30.8
Lj8A241G19 Lonicera japonica HOM05D003389 ORTHO05D003917 1.9e-08 63.9 151 30.5
ClCG01G003270 Citrullus lanatus HOM05D003389 ORTHO05D003917 4.3e-08 62.8 161 29.2
COL.COLO4_23793 Corchorus olitorius HOM05D003389 ORTHO05D003917 7.4e-08 62.0 159 28.3
Eucgr.D01937 Eucalyptus grandis HOM05D003389 ORTHO05D003917 1.3e-07 61.2 161 29.8
MBI04_g06622_MAGBIO Magnolia biondii HOM05D003389 ORTHO05D003917 8.1e-07 58.5 149 28.9
MCO06G239 Micromonas commoda HOM05D003389 ORTHO05D003917 8.1e-07 58.5 174 26.4
TPR.G19581 Trifolium pratense HOM05D003389 ORTHO05D003917 8.1e-07 58.5 68 41.2
Lj2C200G2 Lonicera japonica HOM05D003389 ORTHO05D003917 1.4e-06 57.8 104 34.6
Hma1.2p1_0138F.1_g062730 Hydrangea macrophylla HOM05D003389 ORTHO05D003917 1.8e-06 57.4 150 28.7


User provided reference genes

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