Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb032190 Zea mays HOM05D001225 ORTHO05D011670 3.2e-24 114.4 62 100.0
Os07g0614600 Oryza sativa ssp. japonica HOM05D001225 ORTHO05D001252 1.7e-09 65.5 52 61.5
Cfa003515 Carpinus fangiana HOM05D001225 ORTHO05D001252 1.1e-08 62.8 48 60.4
Dinv20413 Davidia involucrata HOM05D001225 ORTHO05D001252 1.4e-08 62.4 43 69.8
Haze_16060 Corylus avellana HOM05D001225 ORTHO05D001252 1.9e-08 62.0 48 60.4
Glyma.07G041000 Glycine max HOM05D001225 ORTHO05D001252 1.9e-08 62.0 47 70.2
Glyma.16G009700 Glycine max HOM05D001225 ORTHO05D001252 1.9e-08 62.0 47 70.2
Phvul.010G127700 Phaseolus vulgaris HOM05D001225 ORTHO05D001252 3.2e-08 61.2 45 71.1
RcHm_v2.0_Chr2g0146271 Rosa chinensis HOM05D001225 ORTHO05D001252 3.2e-08 61.2 46 67.4
CiPaw.01G216500 Carya illinoinensis HOM05D001225 ORTHO05D001252 7.1e-08 60.1 54 59.3
PGR119G1661 Punica granatum HOM05D001225 ORTHO05D001252 7.1e-08 60.1 57 59.6
Actinidia26016 Actinidia chinensis HOM05D001225 ORTHO05D001252 1.2e-07 59.3 42 66.7
VMungo0331G1718 Vigna mungo HOM05D001225 ORTHO05D001252 1.2e-07 59.3 45 71.1
Nn6g35682 Nelumbo nucifera HOM05D001225 ORTHO05D001252 1.6e-07 58.9 46 60.9
FvH4_6g35090 Fragaria vesca HOM05D001225 ORTHO05D001252 3.5e-07 57.8 46 60.9
FAN14G1912 Fragaria x ananassa HOM05D001225 ORTHO05D001252 3.5e-07 57.8 46 60.9
SalBow7G3527 Salvia bowleyana HOM05D001225 ORTHO05D001252 3.5e-07 57.8 61 55.7
TAR624G0978 Trochodendron aralioides HOM05D001225 ORTHO05D001252 4.6e-07 57.4 43 65.1
FAN02G0018 Fragaria x ananassa HOM05D001225 ORTHO05D001252 6.0e-07 57.0 46 60.9
Prupe.3G038100 Prunus persica HOM05D001225 ORTHO05D001252 6.0e-07 57.0 54 59.3
Oeu015499.1 Olea europaea HOM05D001225 ORTHO05D001252 7.8e-07 56.6 47 63.8
Zm00001eb103710 Zea mays HOM05D001225 ORTHO05D441911 7.8e-07 56.6 41 78.0
MD09G1178800 Malus domestica HOM05D001225 ORTHO05D001252 1.0e-06 56.2 46 60.9
GSVIVG01016725001 Vitis vinifera HOM05D001225 ORTHO05D001252 1.0e-06 56.2 51 60.8
Actinidia31167 Actinidia chinensis HOM05D001225 ORTHO05D011670 1.3e-06 55.8 42 61.9
SGA_v2.0_scaffold4G02074 Striga asiatica HOM05D001225 ORTHO05D001252 1.3e-06 55.8 49 57.1
MSTRG.22538 Avicennia marina HOM05D001225 ORTHO05D001252 1.7e-06 55.5 52 53.8
Cpa.g.sc25.143 Carica papaya HOM05D001225 ORTHO05D001252 1.7e-06 55.5 51 58.8
Migut.I01101 Erythranthe guttata HOM05D001225 ORTHO05D001252 1.7e-06 55.5 51 56.9
Oeu005581.1 Olea europaea HOM05D001225 ORTHO05D001252 1.7e-06 55.5 35 65.7
SGA_v2.0_scaffold68G22849 Striga asiatica HOM05D001225 ORTHO05D001252 1.7e-06 55.5 49 61.2
MD17G1164600 Malus domestica HOM05D001225 ORTHO05D001252 2.3e-06 55.1 44 61.4
Nitab4.5_0001899g0140 Nicotiana tabacum HOM05D005877 ORTHO05D011670 2.3e-06 55.1 31 77.4
Nitab4.5_0006232g0030 Nicotiana tabacum HOM05D001225 ORTHO05D001252 2.3e-06 55.1 31 77.4
Migut.D00929 Erythranthe guttata HOM05D001225 ORTHO05D001252 3.0e-06 54.7 56 57.1
FAN09G3308 Fragaria x ananassa HOM05D001225 ORTHO05D001252 3.0e-06 54.7 46 56.5
Lsat_1_v5_gn_1_37881 Lactuca sativa HOM05D001225 ORTHO05D001252 3.0e-06 54.7 49 59.2
MSTRG.9528 Avicennia marina HOM05D001225 ORTHO05D001252 3.9e-06 54.3 53 56.6
Duzib235G0938 Durio zibethinus HOM05D001225 ORTHO05D001252 3.9e-06 54.3 41 61.0
Nitab4.5_0005153g0090 Nicotiana tabacum HOM05D001225 ORTHO05D001252 3.9e-06 54.3 42 64.3
QL05p003857 Quercus lobata HOM05D001225 ORTHO05D001252 3.9e-06 54.3 48 54.2
Sed0025951 Sechium edule HOM05D001225 ORTHO05D001252 3.9e-06 54.3 41 63.4
TAR636G1153 Trochodendron aralioides HOM05D001225 ORTHO05D001252 3.9e-06 54.3 43 60.5
CANSAT56G2986 Cannabis sativa HOM05D001225 ORTHO05D001252 5.1e-06 53.9 41 61.0
Ca_23403_v3 Cicer arietinum L. HOM05D001225 ORTHO05D001252 5.1e-06 53.9 46 58.7
arahy.Tifrunner.gnm1.ann1.G6H680 Arachis hypogaea HOM05D001225 ORTHO05D001252 6.6e-06 53.5 50 58.0
A07p38640 Brassica napus HOM05D001225 ORTHO05D001252 6.6e-06 53.5 51 56.9
Carub.0002s1933 Capsella rubella HOM05D001225 ORTHO05D001252 6.6e-06 53.5 48 60.4
Ciclev10025379m.g Citrus clementina HOM05D001225 ORTHO05D001252 6.6e-06 53.5 47 55.3
Potri.003G068500 Populus trichocarpa HOM05D001225 ORTHO05D001252 6.6e-06 53.5 35 68.6
THA.LOC104808060 Tarenaya hassleriana HOM05D001225 ORTHO05D001252 6.6e-06 53.5 47 55.3
CSS0014521 Camellia sinensis var. sinensis HOM05D001225 ORTHO05D001252 8.6e-06 53.1 35 65.7
CAN.G1243.3 Capsicum annuum HOM05D001225 ORTHO05D001252 8.6e-06 53.1 46 56.5


User provided reference genes

Program Settings