Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb031780 Zea mays HOM05D003515 ORTHO05D004347 9.0e-81 303.5 153 100.0
Zm00001eb277800 Zea mays HOM05D003515 ORTHO05D004347 9.4e-78 293.5 153 96.7
Zm00001eb191750 Zea mays HOM05D003515 ORTHO05D004347 2.3e-76 288.9 148 98.0
Zm00001eb225590 Zea mays HOM05D003515 ORTHO05D004347 8.8e-76 287.0 148 97.3
Zm00001eb303570 Zea mays HOM05D003515 ORTHO05D004347 1.1e-73 280.0 148 95.3
Zm00001eb388450 Zea mays HOM05D003515 ORTHO05D004347 1.1e-73 280.0 148 95.3
Zm00001eb441390 Zea mays HOM05D003515 ORTHO05D004347 1.1e-73 280.0 148 95.3
Zm00001eb441960 Zea mays HOM05D003515 ORTHO05D004347 1.1e-73 280.0 148 95.3
Zm00001eb440130 Zea mays HOM05D003515 ORTHO05D004347 3.1e-73 278.5 148 94.6
Zm00001eb070690 Zea mays HOM05D003515 ORTHO05D004347 5.3e-73 277.7 146 95.9
Zm00001eb203100 Zea mays HOM05D003515 ORTHO05D004347 2.6e-72 275.4 148 93.9
Os01g0757800 Oryza sativa ssp. japonica HOM05D003515 ORTHO05D004347 2.5e-62 242.3 148 80.4
TAR624G0550 Trochodendron aralioides HOM05D003515 ORTHO05D004347 4.2e-54 214.9 148 71.6
Cfa001125 Carpinus fangiana HOM05D003515 ORTHO05D004347 1.0e-52 210.3 149 69.8
Hma1.2p1_0088F.1_g045243 Hydrangea macrophylla HOM05D003515 ORTHO05D004347 1.0e-52 210.3 148 68.9
FAN16G1075 Fragaria x ananassa HOM05D003515 ORTHO05D004347 1.8e-52 209.5 149 71.1
FAN21G1878 Fragaria x ananassa HOM05D003515 ORTHO05D004347 1.8e-52 209.5 149 71.1
FAN11G3814 Fragaria x ananassa HOM05D003515 ORTHO05D004347 3.0e-52 208.8 149 70.5
GSVIVG01012151001 Vitis vinifera HOM05D003515 ORTHO05D004347 4.0e-52 208.4 148 68.2
PSO541G6439 Papaver somniferum HOM05D003515 ORTHO05D004347 1.2e-51 206.8 148 66.2
CSS0001709 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 2.0e-51 206.1 148 69.6
TWI63G0015 Tripterygium wilfordii HOM05D003515 ORTHO05D004347 2.0e-51 206.1 148 67.6
vmacro03558 Vaccinium macrocarpon HOM05D003515 ORTHO05D004347 2.6e-51 205.7 148 68.9
Rhsim13G0134000 Rhododendron simsii HOM05D003515 ORTHO05D004347 3.4e-51 205.3 148 69.6
RhsimUnG0176900 Rhododendron simsii HOM05D003515 ORTHO05D004347 3.4e-51 205.3 148 69.6
Haze_05267 Corylus avellana HOM05D003515 ORTHO05D004347 4.4e-51 204.9 149 68.5
QL11p012061 Quercus lobata HOM05D003515 ORTHO05D004347 4.4e-51 204.9 149 69.8
Ca_18232_v3 Cicer arietinum L. HOM05D003515 ORTHO05D004347 5.7e-51 204.5 149 67.1
Psat7g087560 Pisum sativum HOM05D003515 ORTHO05D004347 7.5e-51 204.1 149 67.1
MD10G1227200 Malus domestica HOM05D003515 ORTHO05D004347 9.8e-51 203.8 149 68.5
Nn7g38343 Nelumbo nucifera HOM05D003515 ORTHO05D004347 9.8e-51 203.8 148 70.3
Aqoxy2G04030 Aquilegia oxysepala HOM05D003515 ORTHO05D004347 1.7e-50 203.0 148 65.5
Manes.03G074900 Manihot esculenta HOM05D003515 ORTHO05D004347 2.8e-50 202.2 149 67.1
RcHm_v2.0_Chr5g0021171 Rosa chinensis HOM05D003515 ORTHO05D004347 2.8e-50 202.2 149 69.1
Sabra03G0110800 Salix brachista HOM05D003515 ORTHO05D004347 2.8e-50 202.2 149 67.1
Medtr4g094755 Medicago truncatula HOM05D003515 ORTHO05D004347 3.7e-50 201.8 149 65.8
Atru.chr10.315 Acer truncatum HOM05D003515 ORTHO05D004347 6.3e-50 201.1 149 66.4
RcHm_v2.0_Chr5g0021201 Rosa chinensis HOM05D003515 ORTHO05D004347 8.3e-50 200.7 149 67.8
Lalb_Chr13g0293411 Lupinus albus HOM05D003515 ORTHO05D004347 1.1e-49 200.3 149 65.1
Peaxi162Scf00151g00110 Petunia axillaris HOM05D003515 ORTHO05D004347 1.1e-49 200.3 148 68.2
HPP92_014201 Vanilla planifolia HOM05D003515 ORTHO05D004347 1.1e-49 200.3 148 67.6
HPP92_026459 Vanilla planifolia HOM05D003515 ORTHO05D004347 1.1e-49 200.3 148 67.6
Lj1C1149T14 Lonicera japonica HOM05D003515 ORTHO05D004347 1.4e-49 199.9 148 66.2
CSS0002085 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 2.4e-49 199.1 148 68.9
Ciclev10014398m.g Citrus clementina HOM05D003515 ORTHO05D004347 2.4e-49 199.1 149 65.8
Lj4g0010619 Lotus japonicus HOM05D003515 ORTHO05D004347 3.1e-49 198.7 149 65.8
AL8G14790 Arabidopsis lyrata HOM05D003515 ORTHO05D004347 4.1e-49 198.4 149 67.8
HanXRQChr14g0439721 Helianthus annuus HOM05D003515 ORTHO05D004347 4.1e-49 198.4 148 66.2
Prupe.4G118000 Prunus persica HOM05D003515 ORTHO05D004347 4.1e-49 198.4 149 66.4
CANSAT35G1862 Cannabis sativa HOM05D003515 ORTHO05D004347 5.4e-49 198.0 149 67.1
Carub.0008s0352 Capsella rubella HOM05D003515 ORTHO05D004347 5.4e-49 198.0 149 67.8
CsaV3_6G052970 Cucumis sativus L. HOM05D003515 ORTHO05D004347 5.4e-49 198.0 149 64.4
Hma1.2p1_0088F.1_g045246 Hydrangea macrophylla HOM05D003515 ORTHO05D004347 5.4e-49 198.0 148 66.9
AT5G44740 Arabidopsis thaliana HOM05D003515 ORTHO05D004347 7.0e-49 197.6 149 67.8
COL.COLO4_16231 Corchorus olitorius HOM05D003515 ORTHO05D004347 9.1e-49 197.2 149 67.1
CARHR178160 Cardamine hirsuta HOM05D003515 ORTHO05D004347 1.2e-48 196.8 149 67.1
EL10Ac7g17242 Beta vulgaris HOM05D003515 ORTHO05D004347 1.6e-48 196.4 148 66.2
CSS0015899 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.6e-48 196.4 148 66.2
CiPaw.10G105500 Carya illinoinensis HOM05D003515 ORTHO05D004347 1.6e-48 196.4 149 67.1
ECA238G0584 Erigeron canadensis HOM05D003515 ORTHO05D004347 1.6e-48 196.4 148 64.9
Eucgr.D00012 Eucalyptus grandis HOM05D003515 ORTHO05D004347 1.6e-48 196.4 152 65.8
Thhalv10000807m.g Eutrema salsugineum HOM05D003515 ORTHO05D004347 1.6e-48 196.4 149 67.8
PGR004G1774 Punica granatum HOM05D003515 ORTHO05D004347 1.6e-48 196.4 150 65.3
arahy.Tifrunner.gnm1.ann1.NQ3I2Y Arachis hypogaea HOM05D003515 ORTHO05D004347 2.0e-48 196.1 149 65.8
MELO3C007012.2 Cucumis melo HOM05D003515 ORTHO05D004347 2.0e-48 196.1 149 63.8
Dinv07004 Davidia involucrata HOM05D003515 ORTHO05D004347 2.0e-48 196.1 148 65.5
Glyma.08G088900 Glycine max HOM05D003515 ORTHO05D004347 2.0e-48 196.1 149 65.1
Oeu008987.4 Olea europaea HOM05D003515 ORTHO05D004347 2.0e-48 196.1 148 64.2
Thecc.02G003700 Theobroma cacao HOM05D003515 ORTHO05D004347 2.0e-48 196.1 149 67.1
BcaNung07103 Brassica carinata HOM05D003515 ORTHO05D004347 2.7e-48 195.7 149 66.4
ClCG01G025730 Citrullus lanatus HOM05D003515 ORTHO05D004347 2.7e-48 195.7 149 63.8
Cc09_g05170 Coffea canephora HOM05D003515 ORTHO05D004347 2.7e-48 195.7 148 65.5
SEGI_02016 Sequoiadendron giganteum HOM05D003515 ORTHO05D004347 3.5e-48 195.3 148 61.5
CSS0028889 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 4.5e-48 194.9 148 65.5
Phvul.002G188000 Phaseolus vulgaris HOM05D003515 ORTHO05D004347 4.5e-48 194.9 149 63.8
VMungo0251G3194 Vigna mungo HOM05D003515 ORTHO05D004347 4.5e-48 194.9 149 63.8
Duzib132G1190 Durio zibethinus HOM05D003515 ORTHO05D004347 5.9e-48 194.5 149 66.4
Lsat_1_v5_gn_2_60141 Lactuca sativa HOM05D003515 ORTHO05D004347 5.9e-48 194.5 149 64.4
Nitab4.5_0003190g0020 Nicotiana tabacum HOM05D003515 ORTHO05D004347 5.9e-48 194.5 148 66.9
RcHm_v2.0_Chr4g0406921 Rosa chinensis HOM05D003515 ORTHO05D004347 5.9e-48 194.5 149 68.5
Sp2g09580 Schrenkiella parvula HOM05D003515 ORTHO05D004347 5.9e-48 194.5 149 65.8
CSS0015745 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 7.7e-48 194.1 148 65.5
CAN.G391.1 Capsicum annuum HOM05D003515 ORTHO05D004347 7.7e-48 194.1 148 65.5
Migut.M02011 Erythranthe guttata HOM05D003515 ORTHO05D004347 7.7e-48 194.1 148 64.2
PGSC0003DMG401001013 Solanum tuberosum HOM05D003515 ORTHO05D004347 1.3e-47 193.4 148 65.5
A06p46940 Brassica napus HOM05D003515 ORTHO05D004347 1.7e-47 193.0 149 67.1
BraA06t27567Z Brassica rapa HOM05D003515 ORTHO05D004347 1.7e-47 193.0 149 67.1
Nitab4.5_0000254g0140 Nicotiana tabacum HOM05D003515 ORTHO05D004347 2.2e-47 192.6 148 66.2
Aa31LG9G8430 Aethionema arabicum HOM05D003515 ORTHO05D004347 3.8e-47 191.8 148 65.5
ATR0763G272 Amborella trichopoda HOM05D003515 ORTHO05D004347 3.8e-47 191.8 148 62.8
arahy.Tifrunner.gnm1.ann1.ZWBN17 Arachis hypogaea HOM05D003515 ORTHO05D004347 3.8e-47 191.8 149 64.4
C07p27710 Brassica napus HOM05D003515 ORTHO05D004347 3.8e-47 191.8 153 64.7
BolC7t43303H Brassica oleracea HOM05D003515 ORTHO05D004347 3.8e-47 191.8 153 64.7
Sopen01g017810 Solanum pennellii HOM05D003515 ORTHO05D004347 3.8e-47 191.8 148 64.9
Sed0024374 Sechium edule HOM05D003515 ORTHO05D004347 5.0e-47 191.4 149 63.1
AUR62040332 Chenopodium quinoa HOM05D003515 ORTHO05D004347 6.5e-47 191.0 148 64.2
Gohir.A05G245600 Gossypium hirsutum HOM05D003515 ORTHO05D004347 1.1e-46 190.3 149 65.1
Gohir.D05G247100 Gossypium hirsutum HOM05D003515 ORTHO05D004347 1.1e-46 190.3 149 65.1
Gorai.009G257800 Gossypium raimondii HOM05D003515 ORTHO05D004347 2.5e-46 189.1 149 64.4
Solyc01g034150.4 Solanum lycopersicum HOM05D003515 ORTHO05D004347 3.2e-46 188.7 148 64.2
RcHm_v2.0_Chr5g0021111 Rosa chinensis HOM05D003515 ORTHO05D004347 5.5e-46 188.0 152 66.4
THA.LOC104812921 Tarenaya hassleriana HOM05D003515 ORTHO05D004347 2.7e-45 185.7 149 62.4
CSS0031993 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 3.6e-45 185.3 148 63.5
SGA_v2.0_scaffold298G47708 Striga asiatica HOM05D003515 ORTHO05D004347 6.1e-45 184.5 149 60.4
DCAR_007777 Daucus carota HOM05D003515 ORTHO05D004347 4.0e-44 181.8 188 52.1
unitig_748.g8071 Utricularia gibba HOM05D003515 ORTHO05D004347 8.8e-44 180.6 148 62.8
AUR62037879 Chenopodium quinoa HOM05D003515 ORTHO05D004347 2.6e-43 179.1 183 52.5
BcaNung06821 Brassica carinata HOM05D003515 ORTHO05D004347 3.5e-40 168.7 159 59.1
AagrBONN_evm.TU.Sc2ySwM_228.4437 Anthoceros agrestis HOM05D003515 ORTHO05D004347 1.3e-39 166.8 150 56.0
Mapoly0100s0031 Marchantia polymorpha HOM05D003515 ORTHO05D004347 4.3e-38 161.8 148 54.7
CSS0046591 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 9.5e-38 160.6 222 44.6
Pp3c8_17250 Physcomitrium patens HOM05D003515 ORTHO05D004347 9.5e-38 160.6 148 58.1
SMO118G0165 Selaginella moellendorffii HOM05D003515 ORTHO05D004347 1.4e-36 156.8 151 53.0
Zm00001eb371460 Zea mays HOM05D003515 ORTHO05D004347 6.8e-36 154.5 82 95.1
HanXRQChr14g0439691 Helianthus annuus HOM05D003515 ORTHO05D004347 9.8e-35 150.6 121 61.2
CBR_g30567 Chara braunii HOM05D003515 ORTHO05D004347 1.7e-34 149.8 148 53.4
CDE06G0434 Ceratophyllum demersum HOM05D003515 ORTHO05D004347 4.1e-33 145.2 141 56.7
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 1.8e-28 129.8 90 70.0
CSS0006685 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 8.9e-28 127.5 90 72.2
MSTRG.2877 Avicennia marina HOM05D003515 ORTHO05D004347 7.5e-27 124.4 90 68.9
Ah.15g091880 Amaranthus hybridus HOM05D003515 ORTHO05D004347 9.8e-27 124.0 118 55.9
Cpa.g.sc30.112 Carica papaya HOM05D003515 ORTHO05D004347 6.4e-26 121.3 77 75.3
SHI28054 Sapria himalayana HOM05D003515 ORTHO05D004347 5.4e-25 118.2 90 67.8
CSS0033549 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.1e-22 110.5 148 45.3
Zm00001eb152650 Zea mays HOM05D003515 ORTHO05D004347 3.3e-22 109.0 53 98.1
Zm00001eb409210 Zea mays HOM05D003515 ORTHO05D004347 3.3e-22 109.0 53 98.1
FvH4_3g13010 Fragaria vesca HOM05D003515 ORTHO05D004347 4.3e-22 108.6 84 64.3
CSS0007738 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 2.3e-20 102.8 84 66.7
Psat7g087520 Pisum sativum HOM05D003515 ORTHO05D004347 3.7e-18 95.5 147 40.8
CSS0032916 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 2.3e-15 86.3 68 60.3
TPR.G22047 Trifolium pratense HOM05D003515 ORTHO05D004347 2.5e-14 82.8 56 62.5
CSS0046652 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 7.3e-14 81.3 68 58.8
SHI28055 Sapria himalayana HOM05D003515 ORTHO05D004347 2.1e-13 79.7 90 46.7
Sc05g0004760 Simmondsia chinensis HOM05D003515 ORTHO05D004347 3.6e-13 79.0 54 63.0
Cre12.g524150 Chlamydomonas reinhardtii HOM05D003515 ORTHO05D004347 1.1e-12 77.4 76 53.9
PRCOL_00006902 Prasinoderma coloniale HOM05D003515 ORTHO05D004347 2.0e-11 73.2 190 32.6
Pp3c14_23660 Physcomitrium patens HOM05D003515 ORTHO05D004347 1.4e-09 67.0 164 34.8
Mapoly0226s0007 Marchantia polymorpha HOM05D003515 ORTHO05D004347 7.8e-08 61.2 158 32.9
CDE06G0149 Ceratophyllum demersum HOM05D003515 ORTHO05D004347 3.0e-07 59.3 46 63.0
MCO03G362 Micromonas commoda HOM05D003515 ORTHO05D004347 8.6e-07 57.8 148 35.8
Cfa021794 Carpinus fangiana HOM05D003515 ORTHO05D004347 2.5e-06 56.2 182 26.4


User provided reference genes

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