Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb031630 Zea mays HOM05D001663 ORTHO05D005717 1.1e-84 316.6 167 100.0
Zm00001eb109770 Zea mays HOM05D001663 ORTHO05D005717 3.4e-65 251.9 138 98.6
Zm00001eb327970 Zea mays HOM05D001663 ORTHO05D005717 2.4e-50 202.6 128 86.7
Os07g0626300 Oryza sativa ssp. japonica HOM05D001663 ORTHO05D005717 1.2e-41 173.7 138 66.7
Zm00001eb320260 Zea mays HOM05D001663 ORTHO05D005717 2.5e-39 166.0 90 100.0
AT4G08540 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 5.9e-17 91.7 151 39.1
AL6G42350 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 7.7e-17 91.3 144 39.6
Sp6g09330 Schrenkiella parvula HOM05D001663 ORTHO05D005717 7.7e-17 91.3 144 38.9
A09p30170 Brassica napus HOM05D001663 ORTHO05D005717 1.7e-16 90.1 144 38.9
BraA09t38581Z Brassica rapa HOM05D001663 ORTHO05D005717 1.7e-16 90.1 144 38.9
Carub.0006s2708 Capsella rubella HOM05D001663 ORTHO05D005717 1.7e-16 90.1 143 39.9
BcaC04g20910 Brassica carinata HOM05D001663 ORTHO05D005717 2.2e-16 89.7 144 38.9
C09p38040 Brassica napus HOM05D001663 ORTHO05D005717 2.2e-16 89.7 144 38.9
BolC9t56640H Brassica oleracea HOM05D001663 ORTHO05D005717 2.2e-16 89.7 144 38.9
BcaB01g01352 Brassica carinata HOM05D001663 ORTHO05D005717 8.5e-16 87.8 144 38.2
Eucgr.H00930 Eucalyptus grandis HOM05D001663 ORTHO05D005717 8.5e-16 87.8 143 37.8
CARHR259570 Cardamine hirsuta HOM05D001663 ORTHO05D005717 1.9e-15 86.7 143 36.4
MSTRG.947 Avicennia marina HOM05D001663 ORTHO05D005717 3.2e-15 85.9 143 37.1
Prupe.1G508500 Prunus persica HOM05D001663 ORTHO05D005717 3.2e-15 85.9 143 37.8
FAN04G0194 Fragaria x ananassa HOM05D001663 ORTHO05D005717 4.2e-15 85.5 143 37.8
Aa31LG9G14450 Aethionema arabicum HOM05D001663 ORTHO05D005717 5.5e-15 85.1 144 38.2
TWI12G1423 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 5.5e-15 85.1 143 38.5
MSTRG.24955 Avicennia marina HOM05D001663 ORTHO05D005717 7.2e-15 84.7 143 35.7
Nn5g28968 Nelumbo nucifera HOM05D001663 ORTHO05D005717 9.4e-15 84.3 143 37.1
Thhalv10028627m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 2.1e-14 83.2 144 36.1
MD15G1361100 Malus domestica HOM05D001663 ORTHO05D005717 2.1e-14 83.2 142 37.3
Actinidia29571 Actinidia chinensis HOM05D001663 ORTHO05D005717 3.6e-14 82.4 143 36.4
Migut.C00211 Erythranthe guttata HOM05D001663 ORTHO05D005717 4.7e-14 82.0 143 35.7
CiPaw.05G231300 Carya illinoinensis HOM05D001663 ORTHO05D005717 8.0e-14 81.3 142 37.3
SalBow7G1241 Salvia bowleyana HOM05D001663 ORTHO05D005717 8.0e-14 81.3 142 35.9
FvH4_5g38340 Fragaria vesca HOM05D001663 ORTHO05D005717 1.0e-13 80.9 143 36.4
FAN08G2783 Fragaria x ananassa HOM05D001663 ORTHO05D005717 1.0e-13 80.9 143 36.4
FAN18G1299 Fragaria x ananassa HOM05D001663 ORTHO05D005717 1.0e-13 80.9 143 36.4
MD08G1174500 Malus domestica HOM05D001663 ORTHO05D005717 1.0e-13 80.9 143 37.1
TWI56G1202 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 1.0e-13 80.9 143 36.4
Nitab4.5_0004952g0050 Nicotiana tabacum HOM05D001663 ORTHO05D005717 1.4e-13 80.5 142 36.6
Sabra02G0071900 Salix brachista HOM05D001663 ORTHO05D005717 2.3e-13 79.7 143 37.8
Thecc.08G114700 Theobroma cacao HOM05D001663 ORTHO05D005717 2.3e-13 79.7 143 35.7
Hma1.2p1_0529F.1_g173150 Hydrangea macrophylla HOM05D001663 ORTHO05D005717 3.0e-13 79.3 143 37.1
THA.LOC104813136 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 3.0e-13 79.3 145 34.5
GSVIVG01008963001 Vitis vinifera HOM05D001663 ORTHO05D005717 3.0e-13 79.3 143 37.8
Dinv44724 Davidia involucrata HOM05D001663 ORTHO05D005717 4.0e-13 79.0 143 35.7
Nn1g05239 Nelumbo nucifera HOM05D001663 ORTHO05D005717 4.0e-13 79.0 143 35.0
HanXRQChr05g0162261 Helianthus annuus HOM05D001663 ORTHO05D005717 5.2e-13 78.6 142 35.2
COL.COLO4_16510 Corchorus olitorius HOM05D001663 ORTHO05D005717 6.7e-13 78.2 143 35.0
MBI02_g34271_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 6.7e-13 78.2 153 32.7
HPP92_009232 Vanilla planifolia HOM05D001663 ORTHO05D005717 6.7e-13 78.2 143 36.4
CSS0003227 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 8.8e-13 77.8 143 34.3
PSO447G0047 Papaver somniferum HOM05D001663 ORTHO05D005717 8.8e-13 77.8 143 33.6
Solyc04g072440.4 Solanum lycopersicum HOM05D001663 ORTHO05D005717 8.8e-13 77.8 143 35.7
Sopen04g028600 Solanum pennellii HOM05D001663 ORTHO05D005717 8.8e-13 77.8 143 35.7
PGSC0003DMG400027563 Solanum tuberosum HOM05D001663 ORTHO05D005717 8.8e-13 77.8 143 35.7
Duzib093G0504 Durio zibethinus HOM05D001663 ORTHO05D005717 1.5e-12 77.0 143 34.3
ECA246G3782 Erigeron canadensis HOM05D001663 ORTHO05D005717 1.5e-12 77.0 142 35.9
Nitab4.5_0001915g0140 Nicotiana tabacum HOM05D001663 ORTHO05D005717 1.5e-12 77.0 142 35.2
CAN.G617.5 Capsicum annuum HOM05D001663 ORTHO05D005717 2.0e-12 76.6 143 35.0
TAR376G0684 Trochodendron aralioides HOM05D001663 ORTHO05D005717 2.0e-12 76.6 143 32.9
CSS0006833 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 2.6e-12 76.3 143 36.4
Glyma.14G167200 Glycine max HOM05D001663 ORTHO05D005717 2.6e-12 76.3 142 33.8
Manes.18G101600 Manihot esculenta HOM05D001663 ORTHO05D005717 2.6e-12 76.3 143 37.1
TPR.G30426 Trifolium pratense HOM05D001663 ORTHO05D005717 2.6e-12 76.3 142 34.5
VMungo0647G1200 Vigna mungo HOM05D001663 ORTHO05D005717 2.6e-12 76.3 143 33.6
Ciclev10001001m.g Citrus clementina HOM05D001663 ORTHO05D005717 4.4e-12 75.5 143 34.3
Dinv13062 Davidia involucrata HOM05D001663 ORTHO05D005717 4.4e-12 75.5 143 35.0
Cfa015941 Carpinus fangiana HOM05D001663 ORTHO05D005717 5.7e-12 75.1 152 34.2
Ca_26536_v3 Cicer arietinum L. HOM05D001663 ORTHO05D005717 5.7e-12 75.1 142 35.2
DCAR_003554 Daucus carota HOM05D001663 ORTHO05D005717 5.7e-12 75.1 142 34.5
PSO210G6007 Papaver somniferum HOM05D001663 ORTHO05D005717 5.7e-12 75.1 143 32.9
Rhsim07G0199300 Rhododendron simsii HOM05D001663 ORTHO05D005717 5.7e-12 75.1 143 32.2
vmacro04774 Vaccinium macrocarpon HOM05D001663 ORTHO05D005717 5.7e-12 75.1 143 34.3
Cc10_g06030 Coffea canephora HOM05D001663 ORTHO05D005717 7.5e-12 74.7 143 32.2
Lalb_Chr04g0253241 Lupinus albus HOM05D001663 ORTHO05D005717 7.5e-12 74.7 142 33.8
Duzib041G0602 Durio zibethinus HOM05D001663 ORTHO05D005717 1.3e-11 73.9 143 34.3
RhsimUnG0073000 Rhododendron simsii HOM05D001663 ORTHO05D005717 1.3e-11 73.9 143 32.2
QL12p035556 Quercus lobata HOM05D001663 ORTHO05D005717 1.7e-11 73.6 139 35.3
Lalb_Chr10g0102081 Lupinus albus HOM05D001663 ORTHO05D005717 2.2e-11 73.2 142 33.8
Ah.09g230050 Amaranthus hybridus HOM05D001663 ORTHO05D005717 3.7e-11 72.4 142 35.2
EL10Ac8g18308 Beta vulgaris HOM05D001663 ORTHO05D005717 3.7e-11 72.4 139 35.3
Lj1g0004140 Lotus japonicus HOM05D001663 ORTHO05D005717 3.7e-11 72.4 142 34.5
CANSAT25G1457 Cannabis sativa HOM05D001663 ORTHO05D005717 4.8e-11 72.0 142 35.2
Cpa.g.sc1782.1 Carica papaya HOM05D001663 ORTHO05D005717 4.8e-11 72.0 143 33.6
ATR0564G349 Amborella trichopoda HOM05D001663 ORTHO05D005717 6.3e-11 71.6 151 28.5
Gohir.D05G269900 Gossypium hirsutum HOM05D001663 ORTHO05D005717 6.3e-11 71.6 143 33.6
Gorai.009G282600 Gossypium raimondii HOM05D001663 ORTHO05D005717 6.3e-11 71.6 143 33.6
Gorai.005G092500 Gossypium raimondii HOM05D001663 ORTHO05D005717 1.1e-10 70.9 142 33.1
Medtr5g061040 Medicago truncatula HOM05D001663 ORTHO05D005717 1.4e-10 70.5 142 32.4
Atru.chr13.1295 Acer truncatum HOM05D001663 ORTHO05D005717 2.4e-10 69.7 143 34.3
Phvul.008G169200 Phaseolus vulgaris HOM05D001663 ORTHO05D005717 2.4e-10 69.7 142 33.1
Potri.002G090900 Populus trichocarpa HOM05D001663 ORTHO05D005717 5.3e-10 68.6 143 34.3
Sc18g0007560 Simmondsia chinensis HOM05D001663 ORTHO05D005717 5.3e-10 68.6 142 31.0
Aqoxy3G00244 Aquilegia oxysepala HOM05D001663 ORTHO05D005717 1.6e-09 67.0 171 27.5
arahy.Tifrunner.gnm1.ann1.7M6WCL Arachis hypogaea HOM05D001663 ORTHO05D005717 1.6e-09 67.0 142 31.7
arahy.Tifrunner.gnm1.ann1.ZLN6KV Arachis hypogaea HOM05D001663 ORTHO05D005717 1.6e-09 67.0 142 31.7
Psat2g076640 Pisum sativum HOM05D001663 ORTHO05D005717 1.6e-09 67.0 142 32.4
Gohir.A02G075400 Gossypium hirsutum HOM05D001663 ORTHO05D005717 2.0e-09 66.6 142 31.7
THA.LOC104816946 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 2.0e-09 66.6 144 31.9
Actinidia33165 Actinidia chinensis HOM05D001663 ORTHO05D005717 1.0e-08 64.3 140 32.1
Glyma.13G085400 Glycine max HOM05D001663 ORTHO05D005717 1.0e-08 64.3 142 32.4
RcHm_v2.0_Chr7g0240361 Rosa chinensis HOM05D001663 ORTHO05D005717 5.0e-08 62.0 109 36.7
PGR042G1550 Punica granatum HOM05D001663 ORTHO05D005717 1.9e-07 60.1 98 38.8
FAN13G3230 Fragaria x ananassa HOM05D001663 ORTHO05D005717 2.5e-07 59.7 98 36.7
Haze_00550 Corylus avellana HOM05D001663 ORTHO05D005717 3.2e-07 59.3 138 31.9
ClCG11G008030 Citrullus lanatus HOM05D001663 ORTHO05D005717 4.2e-07 58.9 144 30.6
AUR62021323 Chenopodium quinoa HOM05D001663 ORTHO05D005717 7.2e-07 58.2 98 36.7
Lsat_1_v5_gn_6_102021 Lactuca sativa HOM05D001663 ORTHO05D005717 1.6e-06 57.0 109 33.9
SGA_v2.0_scaffold48G18009 Striga asiatica HOM05D001663 ORTHO05D005717 2.7e-06 56.2 97 34.0
Peaxi162Scf00756g00434 Petunia axillaris HOM05D001663 ORTHO05D005717 3.6e-06 55.8 98 35.7


User provided reference genes

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