Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb030880 Zea mays HOM05D005023 ORTHO05D006009 6.2e-163 577.4 290 100.0
Os12g0596900 Oryza sativa ssp. japonica HOM05D005023 ORTHO05D006009 1.2e-102 377.1 292 65.8
Aqoxy1G01584 Aquilegia oxysepala HOM05D005023 ORTHO05D006009 7.8e-49 198.4 280 41.8
MBI02_g28332_MAGBIO Magnolia biondii HOM05D005023 ORTHO05D006009 7.8e-49 198.4 273 41.8
HPP92_014897 Vanilla planifolia HOM05D005023 ORTHO05D006009 1.2e-46 191.0 216 47.2
HPP92_014902 Vanilla planifolia HOM05D005023 ORTHO05D006009 1.6e-46 190.7 216 47.2
Dinv28986 Davidia involucrata HOM05D005023 ORTHO05D006009 5.8e-44 182.2 297 38.4
Psat4g122280 Pisum sativum HOM05D005023 ORTHO05D006009 3.7e-43 179.5 215 46.5
PSO170G6706 Papaver somniferum HOM05D005023 ORTHO05D006009 1.9e-42 177.2 262 40.1
Lalb_Chr25g0286701 Lupinus albus HOM05D005023 ORTHO05D006009 2.4e-42 176.8 216 44.4
Hma1.2p1_2161F.1_g315620 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 5.4e-42 175.6 266 41.4
MD06G1038100 Malus domestica HOM05D005023 ORTHO05D006009 5.4e-42 175.6 219 43.8
Phvul.009G009200 Phaseolus vulgaris HOM05D005023 ORTHO05D006009 1.6e-41 174.1 257 40.5
Potri.003G095200 Populus trichocarpa HOM05D005023 ORTHO05D006009 1.6e-41 174.1 219 42.9
Atru.chr12.846 Acer truncatum HOM05D005023 ORTHO05D006009 3.5e-41 172.9 229 42.8
Medtr8g066330 Medicago truncatula HOM05D005023 ORTHO05D006009 6.0e-41 172.2 284 38.0
TPR.G14159 Trifolium pratense HOM05D005023 ORTHO05D006009 6.0e-41 172.2 281 37.7
Lj6g0028231 Lotus japonicus HOM05D005023 ORTHO05D006009 1.3e-40 171.0 286 37.1
PSO302G0152 Papaver somniferum HOM05D005023 ORTHO05D006009 1.3e-40 171.0 262 39.3
QL12p004398 Quercus lobata HOM05D005023 ORTHO05D006009 1.3e-40 171.0 217 44.2
Rhsim07G0130800 Rhododendron simsii HOM05D005023 ORTHO05D006009 2.3e-40 170.2 298 38.9
Cpa.g.sc90.15 Carica papaya HOM05D005023 ORTHO05D006009 3.0e-40 169.9 217 45.2
Cfa012488 Carpinus fangiana HOM05D005023 ORTHO05D006009 3.9e-40 169.5 230 42.2
Ca_22661_v3 Cicer arietinum L. HOM05D005023 ORTHO05D006009 3.9e-40 169.5 222 44.1
COL.COLO4_16967 Corchorus olitorius HOM05D005023 ORTHO05D006009 3.9e-40 169.5 221 45.7
PSO782G3892 Papaver somniferum HOM05D005023 ORTHO05D006009 8.6e-40 168.3 257 41.2
EL10Ac8g19220 Beta vulgaris HOM05D005023 ORTHO05D006009 1.1e-39 167.9 205 46.8
TWI60G0688 Tripterygium wilfordii HOM05D005023 ORTHO05D006009 1.1e-39 167.9 221 43.4
Ciclev10016033m.g Citrus clementina HOM05D005023 ORTHO05D006009 1.5e-39 167.5 216 45.8
DCAR_031128 Daucus carota HOM05D005023 ORTHO05D006009 1.9e-39 167.2 218 42.7
Duzib084G0965 Durio zibethinus HOM05D005023 ORTHO05D006009 1.9e-39 167.2 273 39.9
Actinidia09175 Actinidia chinensis HOM05D005023 ORTHO05D006009 2.5e-39 166.8 217 43.3
CANSAT54G0648 Cannabis sativa HOM05D005023 ORTHO05D006009 2.5e-39 166.8 228 42.5
CiPaw.11G096900 Carya illinoinensis HOM05D005023 ORTHO05D006009 2.5e-39 166.8 230 42.2
FAN08G0704 Fragaria x ananassa HOM05D005023 ORTHO05D006009 3.3e-39 166.4 207 43.0
Lsat_1_v5_gn_6_80180 Lactuca sativa HOM05D005023 ORTHO05D006009 4.3e-39 166.0 208 44.2
Glyma.06G013600 Glycine max HOM05D005023 ORTHO05D006009 5.6e-39 165.6 289 37.0
Prupe.5G030700 Prunus persica HOM05D005023 ORTHO05D006009 5.6e-39 165.6 221 40.3
RcHm_v2.0_Chr7g0211361 Rosa chinensis HOM05D005023 ORTHO05D006009 5.6e-39 165.6 221 40.3
Ah.12g065340 Amaranthus hybridus HOM05D005023 ORTHO05D006009 9.5e-39 164.9 203 45.3
Glyma.04G013700 Glycine max HOM05D005023 ORTHO05D006009 9.5e-39 164.9 203 45.3
PGR042G2438 Punica granatum HOM05D005023 ORTHO05D006009 9.5e-39 164.9 255 40.8
Sabra03G0064200 Salix brachista HOM05D005023 ORTHO05D006009 9.5e-39 164.9 219 40.6
GSVIVG01013101001 Vitis vinifera HOM05D005023 ORTHO05D006009 1.2e-38 164.5 221 42.5
CAN.G298.60 Capsicum annuum HOM05D005023 ORTHO05D006009 1.6e-38 164.1 217 42.9
CAN.G298.61 Capsicum annuum HOM05D005023 ORTHO05D006009 1.6e-38 164.1 217 42.9
CAN.G726.32 Capsicum annuum HOM05D005023 ORTHO05D006009 1.6e-38 164.1 217 42.9
Actinidia25987 Actinidia chinensis HOM05D005023 ORTHO05D006009 2.1e-38 163.7 254 39.0
CDE02G4581 Ceratophyllum demersum HOM05D005023 ORTHO05D006009 2.1e-38 163.7 200 43.5
arahy.Tifrunner.gnm1.ann1.J93PEP Arachis hypogaea HOM05D005023 ORTHO05D006009 3.6e-38 162.9 290 38.3
FAN13G2198 Fragaria x ananassa HOM05D005023 ORTHO05D006009 3.6e-38 162.9 207 42.0
FAN13G2978 Fragaria x ananassa HOM05D005023 ORTHO05D006009 3.6e-38 162.9 207 42.0
Thecc.03G307500 Theobroma cacao HOM05D005023 ORTHO05D006009 3.6e-38 162.9 288 39.2
Peaxi162Scf00170g00918 Petunia axillaris HOM05D005023 ORTHO05D006009 6.2e-38 162.2 218 43.6
ECA240G3323 Erigeron canadensis HOM05D005023 ORTHO05D006009 8.1e-38 161.8 217 43.8
AUR62033976 Chenopodium quinoa HOM05D005023 ORTHO05D006009 1.4e-37 161.0 204 46.1
FvH4_5g22760 Fragaria vesca HOM05D005023 ORTHO05D006009 1.8e-37 160.6 207 41.5
FAN18G3597 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.8e-37 160.6 207 41.5
vmacro00304 Vaccinium macrocarpon HOM05D005023 ORTHO05D006009 1.8e-37 160.6 204 44.1
CSS0008599 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 3.1e-37 159.8 219 40.2
Nitab4.5_0002380g0110 Nicotiana tabacum HOM05D005023 ORTHO05D006009 3.1e-37 159.8 217 43.3
PGSC0003DMG400014810 Solanum tuberosum HOM05D005023 ORTHO05D006009 3.1e-37 159.8 219 42.5
arahy.Tifrunner.gnm1.ann1.6CH5L4 Arachis hypogaea HOM05D005023 ORTHO05D006009 4.0e-37 159.5 290 37.9
arahy.Tifrunner.gnm1.ann1.NK2KWA Arachis hypogaea HOM05D005023 ORTHO05D006009 4.0e-37 159.5 290 37.9
FAN18G4268 Fragaria x ananassa HOM05D005023 ORTHO05D006009 4.0e-37 159.5 207 41.5
Hund11209 Selenicereus undatus HOM05D005023 ORTHO05D006009 4.0e-37 159.5 214 45.8
Solyc08g076570.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 4.0e-37 159.5 218 41.3
Gohir.A12G206900 Gossypium hirsutum HOM05D005023 ORTHO05D006009 5.2e-37 159.1 231 43.7
Migut.E00780 Erythranthe guttata HOM05D005023 ORTHO05D006009 6.8e-37 158.7 261 41.0
Gohir.D12G209350 Gossypium hirsutum HOM05D005023 ORTHO05D006009 6.8e-37 158.7 227 44.1
Gorai.008G224900 Gossypium raimondii HOM05D005023 ORTHO05D006009 6.8e-37 158.7 231 44.2
Aa31sc182G50 Aethionema arabicum HOM05D005023 ORTHO05D006009 8.9e-37 158.3 223 39.0
Sopen08g025130 Solanum pennellii HOM05D005023 ORTHO05D006009 8.9e-37 158.3 219 41.6
Psat4g122680 Pisum sativum HOM05D005023 ORTHO05D006009 2.0e-36 157.1 264 38.3
Nitab4.5_0004839g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 9.8e-36 154.8 217 42.9
Manes.02G223400 Manihot esculenta HOM05D005023 ORTHO05D006009 2.9e-35 153.3 199 40.7
Lj2A234G45 Lonicera japonica HOM05D005023 ORTHO05D006009 3.7e-35 152.9 238 39.1
CARHR174600 Cardamine hirsuta HOM05D005023 ORTHO05D006009 4.9e-35 152.5 211 44.1
AL8G11450 Arabidopsis lyrata HOM05D005023 ORTHO05D006009 6.4e-35 152.1 207 43.0
Sabra01G0107600 Salix brachista HOM05D005023 ORTHO05D006009 6.4e-35 152.1 256 39.5
MSTRG.1995 Avicennia marina HOM05D005023 ORTHO05D006009 8.3e-35 151.8 223 40.4
Nitab4.5_0004669g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 8.3e-35 151.8 217 41.9
PSO063G5178 Papaver somniferum HOM05D005023 ORTHO05D006009 1.9e-34 150.6 164 49.4
ClCG04G001320 Citrullus lanatus HOM05D005023 ORTHO05D006009 2.4e-34 150.2 217 40.1
Nitab4.5_0000353g0050 Nicotiana tabacum HOM05D005023 ORTHO05D006009 2.4e-34 150.2 219 41.1
Eucgr.E00250 Eucalyptus grandis HOM05D005023 ORTHO05D006009 3.2e-34 149.8 300 37.0
Sed0002054 Sechium edule HOM05D005023 ORTHO05D006009 3.2e-34 149.8 215 38.1
THA.LOC104806696 Tarenaya hassleriana HOM05D005023 ORTHO05D006009 3.2e-34 149.8 205 42.0
BcaC06g31439 Brassica carinata HOM05D005023 ORTHO05D006009 5.4e-34 149.1 205 40.5
SalBow6G3781 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.4e-34 149.1 216 41.7
Haze_08177 Corylus avellana HOM05D005023 ORTHO05D006009 7.1e-34 148.7 171 45.6
SalBow6G4088 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.1e-34 148.7 222 41.4
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 9.2e-34 148.3 245 37.1
SalBow6G2872 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.2e-33 147.9 216 41.7
SalBow6G3524 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.2e-33 147.9 216 41.7
SalBow6G4332 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.2e-33 147.9 216 41.7
AT5G46850 Arabidopsis thaliana HOM05D005023 ORTHO05D006009 2.1e-33 147.1 206 41.3
FAN04G1126 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.1e-33 147.1 160 46.9
SalBow6G3383 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.1e-33 147.1 216 41.2
SalBow6G6227 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.1e-33 147.1 216 41.2
SalBow6G6255 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.1e-33 147.1 216 41.7
SalBow8G0269 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.1e-33 147.1 215 41.9
SalBow6G3389 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.7e-33 146.7 216 41.2
Carub.0008s0106 Capsella rubella HOM05D005023 ORTHO05D006009 3.5e-33 146.4 207 42.0
SalBow6G1717 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.6e-33 146.0 216 41.2
Cc08_g03230 Coffea canephora HOM05D005023 ORTHO05D006009 6.0e-33 145.6 210 41.0
SalBow6G6846 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.0e-33 145.6 216 41.2
HanXRQChr03g0083581 Helianthus annuus HOM05D005023 ORTHO05D006009 7.8e-33 145.2 210 40.5
SalBow6G6031 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.8e-33 145.2 216 41.2
Sp2g11650 Schrenkiella parvula HOM05D005023 ORTHO05D006009 7.8e-33 145.2 207 41.5
Thhalv10000976m.g Eutrema salsugineum HOM05D005023 ORTHO05D006009 1.0e-32 144.8 200 42.0
BcaC06g34337 Brassica carinata HOM05D005023 ORTHO05D006009 1.7e-32 144.1 207 40.6
C07p30210 Brassica napus HOM05D005023 ORTHO05D006009 1.7e-32 144.1 207 40.6
BraA06t27429Z Brassica rapa HOM05D005023 ORTHO05D006009 1.1e-31 141.4 208 39.9
BolC7t43557H Brassica oleracea HOM05D005023 ORTHO05D006009 1.5e-31 141.0 207 39.6
SGA_v2.0_scaffold6G03150 Striga asiatica HOM05D005023 ORTHO05D006009 1.5e-31 141.0 254 37.0
TPR.G3350 Trifolium pratense HOM05D005023 ORTHO05D006009 3.3e-31 139.8 138 50.7
A06p45570 Brassica napus HOM05D005023 ORTHO05D006009 4.3e-31 139.4 282 34.4
CsaV3_1G033210 Cucumis sativus L. HOM05D000021 ORTHO05D000010 4.7e-30 136.0 201 39.8
arahy.Tifrunner.gnm1.ann1.GAHP45 Arachis hypogaea HOM05D005023 ORTHO05D006009 6.2e-30 135.6 227 39.2
Nn7g38116 Nelumbo nucifera HOM05D005023 ORTHO05D006009 4.0e-29 132.9 204 38.2
Hma1.2p1_1594F.1_g292650 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 1.1e-26 124.8 187 41.2
SHI20240 Sapria himalayana HOM05D000452 ORTHO05D000647 6.0e-25 119.0 201 36.8
Hma1.2p1_2161F.1_g315630 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 6.6e-24 115.5 133 49.6
SalBow6G6268 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.1e-22 108.6 149 43.0
Sc01g0007280 Simmondsia chinensis HOM05D005023 ORTHO05D006009 1.8e-21 107.5 202 37.1
MELO3C033076.2 Cucumis melo HOM05D005023 ORTHO05D006009 2.4e-21 107.1 219 34.7
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 5.2e-21 105.9 142 41.5
Mapoly0088s0063 Marchantia polymorpha HOM05D005023 ORTHO05D006009 8.9e-21 105.1 202 33.2
SalBow6G5471 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.9e-21 105.1 142 43.7
SalBow6G0969 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.0e-20 104.0 132 45.5
SalBow6G0983 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.4e-20 103.2 132 45.5
SalBow6G1311 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.6e-20 102.1 138 43.5
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 1.3e-19 101.3 182 38.5
Hma1.2p1_0572F.1_g181170 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 4.9e-19 99.4 128 43.0
SalBow6G0951 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.1e-17 94.0 139 41.0
Pp3c13_7870 Physcomitrium patens HOM05D005023 ORTHO05D006009 2.7e-17 93.6 210 30.5
Actinidia09177 Actinidia chinensis HOM05D005023 ORTHO05D006009 2.8e-14 83.6 211 29.4
TAR375G0008 Trochodendron aralioides HOM05D005023 ORTHO05D006009 3.9e-08 63.2 77 45.5


User provided reference genes

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