Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb030850 Zea mays HOM05D007013 ORTHO05D008999 4.3e-127 458.0 231 100.0
Aqoxy1G02096 Aquilegia oxysepala HOM05D007013 ORTHO05D008999 9.8e-63 244.2 232 57.3
HPP92_012407 Vanilla planifolia HOM05D007013 ORTHO05D008999 7.0e-61 238.0 233 54.1
TAR624G0955 Trochodendron aralioides HOM05D007013 ORTHO05D008999 2.7e-60 236.1 231 54.1
Lj6g0002864 Lotus japonicus HOM05D007013 ORTHO05D008999 4.6e-60 235.3 233 55.8
EL10Ac4g07781 Beta vulgaris HOM05D007013 ORTHO05D008999 6.0e-60 235.0 232 56.9
Cc05_g13940 Coffea canephora HOM05D007013 ORTHO05D008999 1.0e-59 234.2 230 54.3
Eucgr.F03478 Eucalyptus grandis HOM05D007013 ORTHO05D008999 2.3e-59 233.0 240 54.2
COL.COLO4_09677 Corchorus olitorius HOM05D007013 ORTHO05D008999 3.0e-59 232.6 234 53.0
ATR0794G085 Amborella trichopoda HOM05D007013 ORTHO05D008999 5.1e-59 231.9 230 53.9
MD11G1215400 Malus domestica HOM05D007013 ORTHO05D008999 8.6e-59 231.1 235 53.2
Actinidia05088 Actinidia chinensis HOM05D007013 ORTHO05D008999 1.5e-58 230.3 237 52.3
PSO541G1885 Papaver somniferum HOM05D007013 ORTHO05D008999 1.9e-58 229.9 234 53.0
THA.LOC104825406 Tarenaya hassleriana HOM05D007013 ORTHO05D008999 3.3e-58 229.2 235 53.2
Migut.H01815 Erythranthe guttata HOM05D007013 ORTHO05D008999 7.3e-58 228.0 230 54.8
Atru.chr2.3453 Acer truncatum HOM05D007013 ORTHO05D008999 9.5e-58 227.6 233 55.4
Hma1.2p1_0036F.1_g023520 Hydrangea macrophylla HOM05D007013 ORTHO05D008999 1.6e-57 226.9 236 54.7
Hma1.2p1_0036F.1_g023530 Hydrangea macrophylla HOM05D007013 ORTHO05D008999 1.6e-57 226.9 236 54.7
Manes.15G070387 Manihot esculenta HOM05D007013 ORTHO05D008999 1.6e-57 226.9 232 52.6
Glyma.08G318300 Glycine max HOM05D007013 ORTHO05D008999 6.2e-57 224.9 232 53.4
Sc16g0005930 Simmondsia chinensis HOM05D007013 ORTHO05D008999 6.2e-57 224.9 230 55.2
Ah.06g182900 Amaranthus hybridus HOM05D007013 ORTHO05D008999 8.1e-57 224.6 230 52.6
Hund01977 Selenicereus undatus HOM05D007013 ORTHO05D008999 8.1e-57 224.6 231 54.1
Oeu034036.2 Olea europaea HOM05D007013 ORTHO05D008999 1.1e-56 224.2 230 53.0
Thecc.07G033700 Theobroma cacao HOM05D007013 ORTHO05D008999 1.1e-56 224.2 233 52.4
vmacro02226 Vaccinium macrocarpon HOM05D007013 ORTHO05D008999 1.8e-56 223.4 235 52.8
Nn1g07163 Nelumbo nucifera HOM05D007013 ORTHO05D008999 4.0e-56 222.2 231 51.9
unitig_578.g16279 Utricularia gibba HOM05D001434 ORTHO05D008999 5.2e-56 221.9 231 52.4
Duzib213G0396 Durio zibethinus HOM05D007013 ORTHO05D008999 6.8e-56 221.5 231 52.4
MSTRG.14440 Avicennia marina HOM05D007013 ORTHO05D008999 8.9e-56 221.1 202 58.4
PSO675G8214 Papaver somniferum HOM05D007013 ORTHO05D008999 8.9e-56 221.1 234 50.9
QL08p009594 Quercus lobata HOM05D007013 ORTHO05D008999 1.5e-55 220.3 233 53.6
CSS0027260 Camellia sinensis var. sinensis HOM05D007013 ORTHO05D008999 2.0e-55 219.9 235 53.6
Gohir.D01G068100 Gossypium hirsutum HOM05D007013 ORTHO05D008999 2.6e-55 219.5 204 52.9
Gorai.002G090100 Gossypium raimondii HOM05D007013 ORTHO05D008999 2.6e-55 219.5 204 52.9
Ciclev10008561m.g Citrus clementina HOM05D007013 ORTHO05D008999 4.4e-55 218.8 231 51.9
Phvul.006G045700 Phaseolus vulgaris HOM05D007013 ORTHO05D008999 4.4e-55 218.8 230 52.6
VMungo0540G0725 Vigna mungo HOM05D007013 ORTHO05D008999 4.4e-55 218.8 209 56.0
CiPaw.12G131100 Carya illinoinensis HOM05D007013 ORTHO05D008999 7.5e-55 218.0 200 55.0
Thhalv10020871m.g Eutrema salsugineum HOM05D007013 ORTHO05D008999 7.5e-55 218.0 229 50.7
Medtr3g052590 Medicago truncatula HOM05D007013 ORTHO05D008999 7.5e-55 218.0 233 51.9
Sabra16G0284300 Salix brachista HOM05D007013 ORTHO05D008999 7.5e-55 218.0 228 50.4
Sopen07g032910 Solanum pennellii HOM05D007013 ORTHO05D008999 7.5e-55 218.0 234 54.7
Cfa020325 Carpinus fangiana HOM05D007013 ORTHO05D008999 9.9e-55 217.6 231 53.7
Ca_14746_v3 Cicer arietinum L. HOM05D007013 ORTHO05D008999 9.9e-55 217.6 172 59.9
Haze_09698 Corylus avellana HOM05D007013 ORTHO05D008999 1.3e-54 217.2 201 57.2
Aa31LG8G7290 Aethionema arabicum HOM05D007013 ORTHO05D008999 1.7e-54 216.9 235 51.1
CANSAT11G0669 Cannabis sativa HOM05D007013 ORTHO05D008999 2.2e-54 216.5 231 54.1
Sp2g09120 Schrenkiella parvula HOM05D007013 ORTHO05D008999 2.2e-54 216.5 230 50.0
Carub.0003s2044 Capsella rubella HOM05D007013 ORTHO05D008999 2.9e-54 216.1 234 49.6
Potri.001G418800 Populus trichocarpa HOM05D007013 ORTHO05D008999 4.9e-54 215.3 232 49.6
RcHm_v2.0_Chr5g0033071 Rosa chinensis HOM05D007013 ORTHO05D008999 4.9e-54 215.3 230 52.2
BraA02t07867Z Brassica rapa HOM05D007013 ORTHO05D008999 6.4e-54 214.9 231 49.8
AUR62020414 Chenopodium quinoa HOM05D007013 ORTHO05D008999 6.4e-54 214.9 188 57.4
CAN.G337.80 Capsicum annuum HOM05D007013 ORTHO05D008999 8.3e-54 214.5 232 51.7
HanXRQChr03g0076401 Helianthus annuus HOM05D007013 ORTHO05D008999 8.3e-54 214.5 231 53.2
Psat5g177160 Pisum sativum HOM05D007013 ORTHO05D008999 1.4e-53 213.8 202 53.5
C02p44890 Brassica napus HOM05D007013 ORTHO05D008999 1.9e-53 213.4 231 49.8
FvH4_3g19730 Fragaria vesca HOM05D007013 ORTHO05D008999 1.9e-53 213.4 192 55.7
TWI38G0247 Tripterygium wilfordii HOM05D007013 ORTHO05D008999 1.9e-53 213.4 228 50.4
BcaB07g30535 Brassica carinata HOM05D007013 ORTHO05D008999 2.4e-53 213.0 229 49.8
GSVIVG01037670001 Vitis vinifera HOM05D007013 ORTHO05D008999 3.2e-53 212.6 201 54.2
A02p28310 Brassica napus HOM05D007013 ORTHO05D008999 4.1e-53 212.2 231 48.9
Nitab4.5_0005590g0010 Nicotiana tabacum HOM05D007013 ORTHO05D008999 4.1e-53 212.2 233 53.6
Peaxi162Scf00235g00319 Petunia axillaris HOM05D007013 ORTHO05D008999 4.1e-53 212.2 247 50.6
SEGI_14581 Sequoiadendron giganteum HOM05D007013 ORTHO05D008999 5.4e-53 211.8 232 50.9
BcaC03g16648 Brassica carinata HOM05D007013 ORTHO05D008999 7.1e-53 211.5 231 49.4
BolC2t10525H Brassica oleracea HOM05D007013 ORTHO05D008999 7.1e-53 211.5 231 49.4
TPR.G33766 Trifolium pratense HOM05D007013 ORTHO05D008999 9.2e-53 211.1 232 50.9
Nitab4.5_0002287g0070 Nicotiana tabacum HOM05D007013 ORTHO05D008999 1.2e-52 210.7 232 52.6
Solyc07g064710.3 Solanum lycopersicum HOM05D007013 ORTHO05D008999 2.1e-52 209.9 235 53.6
Sed0023076 Sechium edule HOM05D007013 ORTHO05D008999 3.5e-52 209.1 229 48.9
ClCG09G010880 Citrullus lanatus HOM05D007013 ORTHO05D008999 7.8e-52 208.0 229 48.5
MELO3C013155.2 Cucumis melo HOM05D007013 ORTHO05D008999 1.7e-51 206.8 230 49.6
CsaV3_7G021910 Cucumis sativus L. HOM05D007013 ORTHO05D008999 1.7e-51 206.8 230 50.0
ECA240G2937 Erigeron canadensis HOM05D007013 ORTHO05D008999 2.3e-51 206.5 234 49.1
AL3G34260 Arabidopsis lyrata HOM05D007013 ORTHO05D008999 5.1e-51 205.3 208 52.9
Lalb_Chr18g0049881 Lupinus albus HOM05D007013 ORTHO05D008999 5.1e-51 205.3 228 50.9
Cpa.g.sc12.289 Carica papaya HOM05D007013 ORTHO05D008999 1.9e-50 203.4 211 53.1
Rhsim06G0218600 Rhododendron simsii HOM05D007013 ORTHO05D008999 4.7e-49 198.7 200 51.5
arahy.Tifrunner.gnm1.ann1.YL2AFE Arachis hypogaea HOM05D007013 ORTHO05D008999 8.1e-49 198.0 222 50.0
FAN16G1225 Fragaria x ananassa HOM05D007013 ORTHO05D008999 3.1e-48 196.1 191 51.8
DCAR_012723 Daucus carota HOM05D007013 ORTHO05D008999 1.5e-47 193.7 238 48.3
Mapoly0002s0307 Marchantia polymorpha HOM05D007013 ORTHO05D008999 1.5e-47 193.7 241 47.3
SMO367G1261 Selaginella moellendorffii HOM05D007013 ORTHO05D008999 1.1e-45 187.6 236 46.6
SGA_v2.0_scaffold363G49936 Striga asiatica HOM05D007013 ORTHO05D008999 1.9e-45 186.8 231 48.9
Lsat_1_v5_gn_9_93121 Lactuca sativa HOM05D007013 ORTHO05D008999 5.6e-42 175.3 236 46.2
Dinv22254 Davidia involucrata HOM05D007013 ORTHO05D008999 9.6e-42 174.5 153 56.9
Gohir.A01G080900 Gossypium hirsutum HOM05D007013 ORTHO05D008999 4.7e-41 172.2 153 51.6
arahy.Tifrunner.gnm1.ann1.PYQ1JD Arachis hypogaea HOM05D007013 ORTHO05D008999 6.9e-40 168.3 153 53.6
AT3G20480 Arabidopsis thaliana HOM05D007013 ORTHO05D008999 1.9e-37 160.2 150 51.3
Os07g0102000 Oryza sativa ssp. japonica HOM05D007013 ORTHO05D008999 1.2e-36 157.5 128 62.5
AUR62015801 Chenopodium quinoa HOM05D007013 ORTHO05D008999 1.7e-35 153.7 129 59.7
CBR_g39764 Chara braunii HOM05D007013 ORTHO05D008999 3.9e-35 152.5 303 33.7
Lj1A874G27 Lonicera japonica HOM05D007013 ORTHO05D008999 4.3e-34 149.1 130 57.7
CDE05G3055 Ceratophyllum demersum HOM05D007013 ORTHO05D008999 2.6e-31 139.8 119 57.1
Prupe.4G215900 Prunus persica HOM05D007013 ORTHO05D008999 6.4e-30 135.2 194 43.3
Pp3c19_1630 Physcomitrium patens HOM05D007013 ORTHO05D008999 1.4e-29 134.0 220 37.3
PGSC0003DMG400022313 Solanum tuberosum HOM05D007013 ORTHO05D008999 3.2e-29 132.9 125 55.2
FAN11G2199 Fragaria x ananassa HOM05D007013 ORTHO05D008999 5.4e-29 132.1 141 51.1
AagrBONN_evm.TU.Sc2ySwM_228.2947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.6e-25 120.6 140 45.0
Glyma.18G095300 Glycine max HOM05D007013 ORTHO05D008999 6.4e-22 108.6 129 46.5
CARHR096240 Cardamine hirsuta HOM05D007013 ORTHO05D008999 2.9e-14 83.2 51 64.7
Medtr0152s0030 Medicago truncatula HOM05D007013 ORTHO05D008999 2.1e-12 77.0 99 42.4
FAN16G0901 Fragaria x ananassa HOM05D007013 ORTHO05D008999 6.7e-11 72.0 63 58.7
TWI34G0353 Tripterygium wilfordii HOM05D007013 ORTHO05D008999 4.1e-08 62.8 45 51.1
Glyma.18G095150 Glycine max HOM05D007013 ORTHO05D008999 2.6e-07 60.1 83 42.2


User provided reference genes

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