Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb030410 Zea mays HOM05D005552 ORTHO05D006743 0.0e+00 1110.9 568 100.0
Os03g0240900 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 2.2e-249 865.5 571 75.3
Os12g0586400 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 4.4e-197 691.8 569 64.1
GSVIVG01003549001 Vitis vinifera HOM05D005552 ORTHO05D006743 2.0e-181 639.8 576 55.9
MD15G1279300 Malus domestica HOM05D005552 ORTHO05D006743 1.7e-177 626.7 576 55.4
COL.COLO4_11363 Corchorus olitorius HOM05D005552 ORTHO05D006743 6.8e-174 614.8 574 52.6
Aqoxy6G00889 Aquilegia oxysepala HOM05D005552 ORTHO05D006743 8.9e-174 614.4 569 55.9
Dinv39890 Davidia involucrata HOM05D005552 ORTHO05D006743 8.9e-174 614.4 575 53.9
Sc16g0001610 Simmondsia chinensis HOM05D005552 ORTHO05D006743 8.9e-174 614.4 572 55.9
FAN26G2590 Fragaria x ananassa HOM05D005552 ORTHO05D006743 4.4e-173 612.1 576 55.4
PSO541G0461 Papaver somniferum HOM05D005552 ORTHO05D006743 4.4e-173 612.1 569 54.3
CiPaw.01G023200 Carya illinoinensis HOM05D005552 ORTHO05D006743 5.8e-173 611.7 575 53.7
Gohir.D11G196500 Gossypium hirsutum HOM05D005552 ORTHO05D006743 5.8e-173 611.7 575 52.5
Gorai.007G210400 Gossypium raimondii HOM05D005552 ORTHO05D006743 5.8e-173 611.7 575 52.5
Thecc.01G050800 Theobroma cacao HOM05D005552 ORTHO05D006743 7.5e-173 611.3 574 52.4
FvH4_1g15480 Fragaria vesca HOM05D005552 ORTHO05D006743 9.8e-173 610.9 576 55.6
PGR119G0642 Punica granatum HOM05D005552 ORTHO05D006743 9.8e-173 610.9 572 55.8
Cc02_g34610 Coffea canephora HOM05D005552 ORTHO05D006743 1.7e-172 610.1 576 53.8
Duzib264G1173 Durio zibethinus HOM05D005552 ORTHO05D006743 2.9e-172 609.4 574 53.0
Prupe.7G138000 Prunus persica HOM05D005552 ORTHO05D006743 3.7e-172 609.0 576 55.2
Cfa003976 Carpinus fangiana HOM05D005552 ORTHO05D006743 4.9e-172 608.6 573 53.8
FAN19G0212 Fragaria x ananassa HOM05D005552 ORTHO05D006743 4.9e-172 608.6 576 55.0
HPP92_017765 Vanilla planifolia HOM05D005552 ORTHO05D006743 6.4e-172 608.2 573 52.5
AUR62003843 Chenopodium quinoa HOM05D005552 ORTHO05D006743 4.1e-171 605.5 572 53.5
FAN28G0665 Fragaria x ananassa HOM05D005552 ORTHO05D006743 4.1e-171 605.5 578 54.8
Oeu020899.1 Olea europaea HOM05D005552 ORTHO05D006743 4.1e-171 605.5 573 52.9
Cpa.g.sc6.396 Carica papaya HOM05D005552 ORTHO05D006743 2.1e-170 603.2 570 53.7
PSO675G7200 Papaver somniferum HOM05D005552 ORTHO05D006743 3.5e-170 602.4 569 53.4
Lj4C139G4 Lonicera japonica HOM05D005552 ORTHO05D006743 4.6e-170 602.1 572 53.1
Ca_24792_v3 Cicer arietinum L. HOM05D005552 ORTHO05D006743 6.6e-169 598.2 571 52.5
CANSAT64G0631 Cannabis sativa HOM05D005552 ORTHO05D006743 1.1e-168 597.4 572 53.5
Ciclev10025258m.g Citrus clementina HOM05D005552 ORTHO05D006743 1.1e-168 597.4 576 53.6
RcHm_v2.0_Chr2g0104711 Rosa chinensis HOM05D005552 ORTHO05D006743 1.1e-168 597.4 576 54.0
Actinidia12065 Actinidia chinensis HOM05D005552 ORTHO05D006743 2.5e-168 596.3 575 52.0
Psat2g165040 Pisum sativum HOM05D005552 ORTHO05D006743 3.3e-168 595.9 572 52.4
THA.LOC104807572 Tarenaya hassleriana HOM05D005552 ORTHO05D006743 3.3e-168 595.9 570 52.8
vmacro21371 Vaccinium macrocarpon HOM05D005552 ORTHO05D006743 5.6e-168 595.1 576 51.6
VMungo1215G1500 Vigna mungo HOM05D005552 ORTHO05D006743 2.1e-167 593.2 574 54.0
Eucgr.I00976 Eucalyptus grandis HOM05D005552 ORTHO05D006743 3.6e-167 592.4 568 53.5
QL06p042750 Quercus lobata HOM05D005552 ORTHO05D006743 3.6e-167 592.4 575 51.8
AUR62001963 Chenopodium quinoa HOM05D005552 ORTHO05D006743 4.7e-167 592.0 572 53.0
Medtr5g017970 Medicago truncatula HOM05D005552 ORTHO05D006743 8.1e-167 591.3 568 52.8
Solyc01g100190.4 Solanum lycopersicum HOM05D005552 ORTHO05D006743 8.1e-167 591.3 575 52.5
Glyma.11G058500 Glycine max HOM05D005552 ORTHO05D006743 1.1e-166 590.9 574 53.5
Lalb_Chr05g0213171 Lupinus albus HOM05D005552 ORTHO05D006743 1.1e-166 590.9 573 53.2
TWI09G0520 Tripterygium wilfordii HOM05D005552 ORTHO05D006743 2.3e-166 589.7 574 51.6
TPR.G11337 Trifolium pratense HOM05D005552 ORTHO05D006743 4.0e-166 589.0 567 52.2
Haze_15444 Corylus avellana HOM05D005552 ORTHO05D006743 5.2e-166 588.6 584 52.2
MD02G1166800 Malus domestica HOM05D005552 ORTHO05D006743 5.2e-166 588.6 571 52.9
Sopen01g043680 Solanum pennellii HOM05D005552 ORTHO05D006743 1.2e-165 587.4 575 52.5
MSTRG.5133 Avicennia marina HOM05D005552 ORTHO05D006743 9.9e-165 584.3 575 53.2
Potri.001G361900 Populus trichocarpa HOM05D005552 ORTHO05D006743 1.3e-164 583.9 577 52.5
Sed0018600 Sechium edule HOM05D005552 ORTHO05D006743 2.9e-164 582.8 569 53.4
Glyma.01G183800 Glycine max HOM05D005552 ORTHO05D006743 3.7e-164 582.4 593 50.9
CSS0032711 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 1.4e-163 580.5 575 51.1
PGSC0003DMG400024733 Solanum tuberosum HOM05D005552 ORTHO05D006743 2.4e-163 579.7 575 52.3
CAN.G1273.15 Capsicum annuum HOM05D005552 ORTHO05D006743 3.2e-163 579.3 576 52.3
arahy.Tifrunner.gnm1.ann1.21BGDZ Arachis hypogaea HOM05D005552 ORTHO05D006743 9.2e-163 577.8 603 49.9
MELO3C007542.2 Cucumis melo HOM05D005552 ORTHO05D006743 9.2e-163 577.8 569 52.2
Hund16313 Selenicereus undatus HOM05D005552 ORTHO05D006743 1.2e-162 577.4 572 54.0
Lsat_1_v5_gn_4_168700 Lactuca sativa HOM05D005552 ORTHO05D006743 2.7e-162 576.2 572 50.0
ECA232G0422 Erigeron canadensis HOM05D005552 ORTHO05D006743 1.0e-161 574.3 576 49.5
Rhsim01G0119100 Rhododendron simsii HOM05D005552 ORTHO05D006743 1.3e-161 573.9 575 49.7
CARHR245320 Cardamine hirsuta HOM05D005552 ORTHO05D006743 6.6e-161 571.6 569 52.9
ClCG01G016650 Citrullus lanatus HOM05D005552 ORTHO05D006743 1.9e-160 570.1 570 52.8
HanXRQChr14g0430701 Helianthus annuus HOM05D005552 ORTHO05D006743 2.5e-160 569.7 574 49.5
AL7G13990 Arabidopsis lyrata HOM05D005552 ORTHO05D006743 2.1e-159 566.6 570 52.5
Lj2g0010083 Lotus japonicus HOM05D005552 ORTHO05D006743 3.6e-159 565.8 574 51.0
Lj6g0016933 Lotus japonicus HOM05D005552 ORTHO05D006743 4.7e-159 565.5 574 50.9
AT4G37190 Arabidopsis thaliana HOM05D005552 ORTHO05D006743 1.1e-158 564.3 570 52.5
Sp7g34600 Schrenkiella parvula HOM05D005552 ORTHO05D006743 6.8e-158 561.6 571 52.5
ATR0767G265 Amborella trichopoda HOM05D005552 ORTHO05D006743 2.0e-157 560.1 551 52.6
Nitab4.5_0002715g0120 Nicotiana tabacum HOM05D005552 ORTHO05D006743 2.0e-157 560.1 604 49.5
Carub.0007s0338 Capsella rubella HOM05D005552 ORTHO05D006743 5.8e-157 558.5 570 52.1
arahy.Tifrunner.gnm1.ann1.A2BBUY Arachis hypogaea HOM05D005552 ORTHO05D006743 1.4e-155 553.9 574 51.0
Thhalv10024834m.g Eutrema salsugineum HOM05D005552 ORTHO05D006743 1.9e-155 553.5 568 51.8
Aa31LG6G13810 Aethionema arabicum HOM05D005552 ORTHO05D006743 5.4e-155 552.0 570 52.1
CDE04G2042 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 2.5e-152 543.1 546 51.1
Nitab4.5_0000368g0430 Nicotiana tabacum HOM05D005552 ORTHO05D006743 6.9e-150 535.0 603 47.3
A03p64710 Brassica napus HOM05D005552 ORTHO05D006743 1.2e-149 534.3 568 48.9
BraA03t15535Z Brassica rapa HOM05D005552 ORTHO05D006743 1.2e-149 534.3 568 48.9
BcaNung04273 Brassica carinata HOM05D005552 ORTHO05D006743 8.4e-148 528.1 568 49.1
C07p62120 Brassica napus HOM05D005552 ORTHO05D006743 8.4e-148 528.1 568 49.3
BolC7t46629H Brassica oleracea HOM05D005552 ORTHO05D006743 8.4e-148 528.1 568 49.3
SGA_v2.0_scaffold36G14364 Striga asiatica HOM05D005552 ORTHO05D006743 1.1e-144 517.7 644 44.9
Phvul.002G021300 Phaseolus vulgaris HOM05D005552 ORTHO05D006743 1.3e-140 504.2 516 51.0
CsaV3_6G043060 Cucumis sativus L. HOM05D005552 ORTHO05D006743 4.9e-140 502.3 527 50.5
Hma1.2p1_0873F.1_g231280 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 1.9e-139 500.4 513 50.9
BcaNung03946 Brassica carinata HOM05D005552 ORTHO05D006743 3.0e-137 493.0 541 49.4
Manes.16G089500 Manihot esculenta HOM05D005552 ORTHO05D006743 8.7e-137 491.5 476 51.7
SEGI_18564 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 6.2e-135 485.3 552 45.8
DCAR_010923 Daucus carota HOM05D005552 ORTHO05D006743 5.3e-134 482.3 679 41.2
Peaxi162Scf00073g00015 Petunia axillaris HOM05D005552 ORTHO05D006743 3.8e-132 476.1 509 50.1
Sopen01g043710 Solanum pennellii HOM05D005552 ORTHO05D006743 1.4e-131 474.2 474 51.9
Hma1.2p1_0873F.1_g231290 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 1.1e-126 458.0 445 52.1
Nn6g32078 Nelumbo nucifera HOM05D005552 ORTHO05D006743 1.4e-126 457.6 423 54.6
TAR628G0695 Trochodendron aralioides HOM05D005552 ORTHO05D006743 2.4e-126 456.8 430 56.0
Mapoly0024s0139 Marchantia polymorpha HOM05D005552 ORTHO05D006743 9.0e-118 428.3 604 41.2
Gohir.A11G189700 Gossypium hirsutum HOM05D005552 ORTHO05D006743 1.9e-115 420.6 386 53.9
Oeu035482.1 Olea europaea HOM05D005552 ORTHO05D006743 1.0e-113 414.8 392 51.8
FvH4_5g33502 Fragaria vesca HOM05D005552 ORTHO05D006743 6.7e-113 412.1 472 48.5
CDE06G0261 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 2.0e-109 400.6 457 47.5
SMO358G0218 Selaginella moellendorffii HOM05D005552 ORTHO05D006743 4.4e-104 382.9 578 42.2
TAR376G0305 Trochodendron aralioides HOM05D005552 ORTHO05D006743 2.8e-103 380.2 478 45.2
Pp3c2_14950 Physcomitrium patens HOM05D005552 ORTHO05D006743 3.7e-103 379.8 599 38.6
FAN18G3771 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.3e-100 371.3 370 54.1
Atru.chr3.424 Acer truncatum HOM05D005552 ORTHO05D006743 5.9e-93 345.9 355 51.0
FAN08G3227 Fragaria x ananassa HOM05D005552 ORTHO05D006743 2.2e-84 317.4 470 42.6
HanXRQChr04g0119851 Helianthus annuus HOM05D005552 ORTHO05D006743 3.6e-82 310.1 291 52.6
unitig_26.g9473 Utricularia gibba HOM05D005552 ORTHO05D006743 2.8e-58 230.7 244 49.6
Atru.chr2.470 Acer truncatum HOM05D005552 ORTHO05D006743 6.0e-53 213.0 378 35.2
CBR_g38209 Chara braunii HOM05D005552 ORTHO05D006743 1.7e-52 211.5 518 30.7
HanXRQChr04g0119841 Helianthus annuus HOM05D005552 ORTHO05D006743 7.6e-48 196.1 212 46.2
unitig_26.g9472 Utricularia gibba HOM05D005552 ORTHO05D006743 5.1e-44 183.3 273 40.3
Atru.chr3.423 Acer truncatum HOM05D005552 ORTHO05D006743 6.0e-37 159.8 164 52.4
Psat4g201960 Pisum sativum HOM05D005552 ORTHO05D006743 2.0e-32 144.8 133 53.4
Cre01.g043700 Chlamydomonas reinhardtii HOM05D005552 ORTHO05D006743 3.5e-29 134.0 611 24.5
arahy.Tifrunner.gnm1.ann1.S73BBB Arachis hypogaea HOM05D005552 ORTHO05D006743 6.9e-25 119.8 219 37.0
MCO05G662 Micromonas commoda HOM05D005552 ORTHO05D006743 3.4e-24 117.5 559 22.5
Peaxi162Scf00073g00115 Petunia axillaris HOM05D005552 ORTHO05D006743 2.2e-23 114.8 74 66.2
SHI23011 Sapria himalayana HOM05D005552 ORTHO05D006743 2.9e-23 114.4 151 39.1
arahy.Tifrunner.gnm1.ann1.ENA0P5 Arachis hypogaea HOM05D005552 ORTHO05D006743 5.4e-22 110.2 78 64.1
SHI23015 Sapria himalayana HOM05D005552 ORTHO05D006743 1.6e-21 108.6 129 45.7
Psat1g136760 Pisum sativum HOM05D005552 ORTHO05D006743 2.8e-18 97.8 117 41.9
Cfa026632 Carpinus fangiana HOM05D005552 ORTHO05D006743 1.8e-17 95.1 363 24.0
C01p02170 Brassica napus HOM05D005552 ORTHO05D006743 2.4e-17 94.7 114 43.0
BolC1t00209H Brassica oleracea HOM05D005552 ORTHO05D006743 2.4e-17 94.7 114 43.0
TAR376G0458 Trochodendron aralioides HOM05D005552 ORTHO05D006743 9.3e-14 82.8 72 54.2
SHI23016 Sapria himalayana HOM05D000105 ORTHO05D000023 1.3e-12 79.0 56 64.3
Psat5g241560 Pisum sativum HOM05D005552 ORTHO05D006743 8.7e-12 76.3 89 42.7
CSS0040680 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 1.9e-11 75.1 73 54.8
Ah.11g041060 Amaranthus hybridus HOM05D005552 ORTHO05D006743 1.6e-10 72.0 52 63.5
CSS0023439 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 1.8e-09 68.6 73 53.4
SEGI_06310 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 3.8e-07 60.8 51 51.0
FvH4_5g33501 Fragaria vesca HOM05D005552 ORTHO05D006743 5.0e-07 60.5 45 62.2
SHI23013 Sapria himalayana HOM05D001839 ORTHO05D001867 1.1e-06 59.3 70 42.9
Cpa.g.sc6.394 Carica papaya HOM05D005552 ORTHO05D006743 2.5e-06 58.2 117 32.5


User provided reference genes

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