Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb030310 Zea mays HOM05D005960 ORTHO05D051632 2.6e-62 241.9 122 100.0
Zm00001eb250570 Zea mays HOM05D005960 ORTHO05D051632 1.5e-38 162.9 80 100.0
Zm00001eb202200 Zea mays HOM05D000365 ORTHO05D000154 1.3e-10 70.1 85 49.4
Zm00001eb292840 Zea mays HOM05D000365 ORTHO05D000154 3.9e-10 68.6 85 49.4
Cc07_g03890 Coffea canephora HOM05D005960 ORTHO05D007537 6.7e-10 67.8 40 85.0
EL10Ac2g03064 Beta vulgaris HOM05D005960 ORTHO05D007537 1.5e-09 66.6 41 80.5
TWI60G0302 Tripterygium wilfordii HOM05D005960 ORTHO05D007537 1.5e-09 66.6 41 80.5
Zm00001eb168290 Zea mays HOM05D000365 ORTHO05D000154 1.5e-09 66.6 85 47.1
Atru.chr8.386 Acer truncatum HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
ATR0111G015 Amborella trichopoda HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
arahy.Tifrunner.gnm1.ann1.7U9LX7 Arachis hypogaea HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
arahy.Tifrunner.gnm1.ann1.8N3EDT Arachis hypogaea HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
BNapus_Darmor_BZH_scaffold_113p00110 Brassica napus HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
BNapus_Darmor_BZH_scaffold_97p00050 Brassica napus HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
BolC1t05923H Brassica oleracea HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
BraA01t04634Z Brassica rapa HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
CSS0003743 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
CSS0005506 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
CANSAT64G2728 Cannabis sativa HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
CAN.G734.6 Capsicum annuum HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
Cpa.g.sc14.144 Carica papaya HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
CiPaw.04G058500 Carya illinoinensis HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
ClCG11G004630 Citrullus lanatus HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
Ciclev10011697m.g Citrus clementina HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
COL.COLO4_21375 Corchorus olitorius HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
Haze_14472 Corylus avellana HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
MELO3C022021.2 Cucumis melo HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
Dinv33810 Davidia involucrata HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
Thhalv10020707m.g Eutrema salsugineum HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
Gohir.A11G071600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
Gohir.D11G075600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
Gorai.007G081300 Gossypium raimondii HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
Lj2g0023614 Lotus japonicus HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
MBI16_g15532_MAGBIO Magnolia biondii HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
MD17G1056600 Malus domestica HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
Os05g0512200 Oryza sativa ssp. japonica HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
Phvul.004G033300 Phaseolus vulgaris HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
Potri.017G090100 Populus trichocarpa HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
Prupe.3G258900 Prunus persica HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
Rhsim10G0046600 Rhododendron simsii HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
Rhsim10G0047200 Rhododendron simsii HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
Sabra17G0079200 Salix brachista HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
Sp3g01070 Schrenkiella parvula HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
Sed0006667 Sechium edule HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
Solyc03g013240.4 Solanum lycopersicum HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
Sopen03g016610 Solanum pennellii HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
THA.LOC104802965 Tarenaya hassleriana HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
vmacro05665 Vaccinium macrocarpon HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
VMungo0464G0831 Vigna mungo HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
GSVIVG01011490001 Vitis vinifera HOM05D005960 ORTHO05D007537 1.9e-09 66.2 38 86.8
EL10Ac2g03055 Beta vulgaris HOM05D005960 ORTHO05D007537 3.3e-09 65.5 41 78.0
Migut.H00653 Erythranthe guttata HOM05D005960 ORTHO05D007537 3.3e-09 65.5 41 78.0
Os12g0445300 Oryza sativa ssp. japonica HOM05D000365 ORTHO05D000154 3.3e-09 65.5 85 45.9
PGSC0003DMG400033541 Solanum tuberosum HOM05D005960 ORTHO05D007537 3.3e-09 65.5 39 84.6
Thecc.04G090800 Theobroma cacao HOM05D005960 ORTHO05D007537 3.3e-09 65.5 38 81.6
Zm00001eb353110 Zea mays HOM05D000365 ORTHO05D000154 3.3e-09 65.5 85 44.7
Manes.01G099100 Manihot esculenta HOM05D005960 ORTHO05D007537 4.3e-09 65.1 38 84.2
PGR004G2687 Punica granatum HOM05D005960 ORTHO05D007537 4.3e-09 65.1 38 84.2
Sc10g0003290 Simmondsia chinensis HOM05D005960 ORTHO05D007537 4.3e-09 65.1 38 84.2
TAR371G0518 Trochodendron aralioides HOM05D005960 ORTHO05D007537 4.3e-09 65.1 38 84.2
Zm00001eb292620 Zea mays HOM05D005960 ORTHO05D007537 4.3e-09 65.1 38 84.2
AL3G11200 Arabidopsis lyrata HOM05D005960 ORTHO05D007537 5.6e-09 64.7 38 84.2
AT3G01060 Arabidopsis thaliana HOM05D005960 ORTHO05D007537 5.6e-09 64.7 38 84.2
Carub.0003s0111 Capsella rubella HOM05D005960 ORTHO05D007537 5.6e-09 64.7 38 84.2
Duzib147G1008 Durio zibethinus HOM05D005960 ORTHO05D007537 5.6e-09 64.7 38 81.6
Nitab4.5_0001637g0110 Nicotiana tabacum HOM05D005960 ORTHO05D007537 5.6e-09 64.7 43 76.7
QL02p039477 Quercus lobata HOM05D005960 ORTHO05D007537 5.6e-09 64.7 38 84.2
QL02p039732 Quercus lobata HOM05D005960 ORTHO05D007537 5.6e-09 64.7 38 84.2
unitig_736.g22244 Utricularia gibba HOM05D005960 ORTHO05D007537 5.6e-09 64.7 38 81.6
Glyma.19G027400 Glycine max HOM05D005960 ORTHO05D007537 7.4e-09 64.3 38 84.2
Hma1.2p1_3044F.1_g332080 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 7.4e-09 64.3 41 78.0
Actinidia01967 Actinidia chinensis HOM05D005960 ORTHO05D007537 9.6e-09 63.9 38 84.2
Actinidia01975 Actinidia chinensis HOM05D005960 ORTHO05D007537 9.6e-09 63.9 38 84.2
Aa31LG5G12560 Aethionema arabicum HOM05D005960 ORTHO05D007537 9.6e-09 63.9 38 84.2
Aqoxy3G00406 Aquilegia oxysepala HOM05D005960 ORTHO05D007537 9.6e-09 63.9 38 84.2
MSTRG.3021 Avicennia marina HOM05D005960 ORTHO05D007537 9.6e-09 63.9 38 81.6
CARHR076010 Cardamine hirsuta HOM05D005960 ORTHO05D007537 9.6e-09 63.9 38 84.2
Cfa007624 Carpinus fangiana HOM05D005960 ORTHO05D007537 9.6e-09 63.9 38 84.2
CsaV3_5G038400 Cucumis sativus L. HOM05D005960 ORTHO05D007537 9.6e-09 63.9 38 84.2
FAN02G1813 Fragaria x ananassa HOM05D005960 ORTHO05D007537 9.6e-09 63.9 38 84.2
FAN05G2671 Fragaria x ananassa HOM05D005960 ORTHO05D007537 9.6e-09 63.9 38 84.2
Glyma.13G059000 Glycine max HOM05D005960 ORTHO05D007537 9.6e-09 63.9 38 84.2
Nn4g23343 Nelumbo nucifera HOM05D005960 ORTHO05D007537 9.6e-09 63.9 38 84.2
RcHm_v2.0_Chr2g0166541 Rosa chinensis HOM05D005960 ORTHO05D007537 9.6e-09 63.9 38 84.2
Zm00001eb292880 Zea mays HOM05D000365 ORTHO05D000154 9.6e-09 63.9 85 49.4
Zm00001eb292890 Zea mays HOM05D000365 ORTHO05D000154 9.6e-09 63.9 85 49.4
AUR62018147 Chenopodium quinoa HOM05D005960 ORTHO05D007537 1.3e-08 63.5 44 70.5
AUR62042562 Chenopodium quinoa HOM05D005960 ORTHO05D007537 1.3e-08 63.5 38 81.6
DCAR_005553 Daucus carota HOM05D005960 ORTHO05D007537 1.3e-08 63.5 37 83.8
Ca_04868_v3 Cicer arietinum L. HOM05D005960 ORTHO05D007537 1.6e-08 63.2 38 81.6
Lalb_Chr06g0175111 Lupinus albus HOM05D005960 ORTHO05D007537 1.6e-08 63.2 38 81.6
Oeu000854.1 Olea europaea HOM05D005960 ORTHO05D007537 1.6e-08 63.2 37 83.8
Psat1g068640 Pisum sativum HOM05D005960 ORTHO05D007537 1.6e-08 63.2 38 81.6
TPR.G26197 Trifolium pratense HOM05D005960 ORTHO05D007537 1.6e-08 63.2 38 81.6
ECA238G1943 Erigeron canadensis HOM05D005960 ORTHO05D007537 2.1e-08 62.8 38 81.6
Eucgr.I01985 Eucalyptus grandis HOM05D005960 ORTHO05D007537 2.1e-08 62.8 38 81.6
FvH4_6g47510 Fragaria vesca HOM05D005960 ORTHO05D007537 2.1e-08 62.8 38 81.6
FAN14G4646 Fragaria x ananassa HOM05D005960 ORTHO05D007537 2.1e-08 62.8 38 81.6
HanXRQChr14g0448721 Helianthus annuus HOM05D005960 ORTHO05D007537 2.1e-08 62.8 38 81.6
Zm00001eb170590 Zea mays HOM05D000365 ORTHO05D000154 2.1e-08 62.8 88 45.5
Medtr6g013750 Medicago truncatula HOM05D005960 ORTHO05D007537 2.8e-08 62.4 41 73.2
PSO013G0364 Papaver somniferum HOM05D005960 ORTHO05D007537 2.8e-08 62.4 38 81.6
Zm00001eb191590 Zea mays HOM05D000365 ORTHO05D000154 3.7e-08 62.0 95 40.0
PSO421G0059 Papaver somniferum HOM05D005960 ORTHO05D007537 4.8e-08 61.6 41 73.2
Peaxi162Scf00451g00429 Petunia axillaris HOM05D005960 ORTHO05D007537 6.2e-08 61.2 43 74.4
Zm00001eb018630 Zea mays HOM05D000365 ORTHO05D000154 8.1e-08 60.8 86 45.3
Zm00001eb292850 Zea mays HOM05D000365 ORTHO05D000154 8.1e-08 60.8 88 44.3
Os12g0441600 Oryza sativa ssp. japonica HOM05D000365 ORTHO05D000154 1.1e-07 60.5 85 42.4
TAR627G0454 Trochodendron aralioides HOM05D005960 ORTHO05D007537 1.4e-07 60.1 52 59.6
Os05g0515500 Oryza sativa ssp. japonica HOM05D000365 ORTHO05D000154 1.8e-07 59.7 85 41.2
Os12g0441300 Oryza sativa ssp. japonica HOM05D000365 ORTHO05D000154 4.0e-07 58.5 85 42.4
Zm00001eb018640 Zea mays HOM05D000365 ORTHO05D000154 4.0e-07 58.5 86 44.2
SalBow1G6551 Salvia bowleyana HOM05D005960 ORTHO05D007537 6.9e-07 57.8 43 65.1
Zm00001eb018660 Zea mays HOM05D000365 ORTHO05D000154 6.9e-07 57.8 86 44.2
Nitab4.5_0005196g0010 Nicotiana tabacum HOM05D005960 ORTHO05D007537 9.0e-07 57.4 48 60.4
Os05g0515600 Oryza sativa ssp. japonica HOM05D000365 ORTHO05D000154 9.0e-07 57.4 85 38.8
Zm00001eb198150 Zea mays HOM05D000365 ORTHO05D000154 1.2e-06 57.0 83 44.6
Dinv17306 Davidia involucrata HOM05D000365 ORTHO05D000154 1.5e-06 56.6 86 37.2
MD09G1061300 Malus domestica HOM05D005960 ORTHO05D007537 1.5e-06 56.6 38 76.3
Zm00001eb198140 Zea mays HOM05D000365 ORTHO05D000154 1.5e-06 56.6 84 44.0
SMO335G0027 Selaginella moellendorffii HOM05D005960 ORTHO05D007537 2.0e-06 56.2 38 71.1
Cc00_g11730 Coffea canephora HOM05D000365 ORTHO05D000154 2.6e-06 55.8 86 39.5
HPP92_023872 Vanilla planifolia HOM05D000365 ORTHO05D000154 2.6e-06 55.8 87 37.9
Zm00001eb392340 Zea mays HOM05D000365 ORTHO05D000154 2.6e-06 55.8 85 38.8
CAN.G782.16 Capsicum annuum HOM05D000365 ORTHO05D000154 3.4e-06 55.5 86 39.5
CDE04G1831 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 3.4e-06 55.5 38 76.3
SEGI_05647 Sequoiadendron giganteum HOM05D005960 ORTHO05D007537 3.4e-06 55.5 41 65.9
Sopen10g003990 Solanum pennellii HOM05D000365 ORTHO05D000154 3.4e-06 55.5 86 39.5
PGSC0003DMG400021854 Solanum tuberosum HOM05D000365 ORTHO05D000154 3.4e-06 55.5 86 39.5
Ciclev10008718m.g Citrus clementina HOM05D000365 ORTHO05D000154 4.5e-06 55.1 86 40.7
Dinv17308 Davidia involucrata HOM05D000365 ORTHO05D000154 4.5e-06 55.1 86 37.2
Dinv39836 Davidia involucrata HOM05D000365 ORTHO05D000154 4.5e-06 55.1 86 37.2
MBI06_g00791_MAGBIO Magnolia biondii HOM05D000365 ORTHO05D000154 4.5e-06 55.1 86 38.4
Mapoly0015s0039 Marchantia polymorpha HOM05D005960 ORTHO05D007537 4.5e-06 55.1 38 68.4
CAN.G616.21 Capsicum annuum HOM05D000365 ORTHO05D000154 7.6e-06 54.3 86 36.0
Os09g0344500 Oryza sativa ssp. japonica HOM05D000365 ORTHO05D000154 7.6e-06 54.3 85 38.8
MBI06_g00799_MAGBIO Magnolia biondii HOM05D000365 ORTHO05D000154 1.0e-05 53.9 86 37.2
Os11g0305400 Oryza sativa ssp. japonica HOM05D000365 ORTHO05D000154 1.0e-05 53.9 84 39.3
Zm00001eb092770 Zea mays HOM05D000365 ORTHO05D000154 1.0e-05 53.9 85 37.6


User provided reference genes

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