Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb029560 Zea mays HOM05D000825 ORTHO05D003684 8.2e-189 663.7 364 100.0
Zm00001eb061940 Zea mays HOM05D000825 ORTHO05D003684 7.1e-15 85.9 53 86.8
Zm00001eb212410 Zea mays HOM05D000825 ORTHO05D003684 7.1e-15 85.9 53 86.8
Os05g0302600 Oryza sativa ssp. japonica HOM05D000825 ORTHO05D003684 1.0e-13 82.0 53 81.1
Ciclev10016456m.g Citrus clementina HOM05D000825 ORTHO05D003684 9.5e-12 75.5 54 75.9
Lalb_Chr24g0403391 Lupinus albus HOM05D000825 ORTHO05D003684 3.6e-11 73.6 54 72.2
CANSAT64G2780 Cannabis sativa HOM05D000825 ORTHO05D003684 8.1e-11 72.4 53 67.9
COL.COLO4_29293 Corchorus olitorius HOM05D000825 ORTHO05D003684 8.1e-11 72.4 53 69.8
Sed0016345 Sechium edule HOM05D000825 ORTHO05D003684 8.1e-11 72.4 54 70.4
Lalb_Chr14g0363141 Lupinus albus HOM05D000825 ORTHO05D003684 1.1e-10 72.0 54 70.4
Lju41C49G5 Lonicera japonica HOM05D000825 ORTHO05D003684 1.4e-10 71.6 53 71.7
CiPaw.04G034000 Carya illinoinensis HOM05D000825 ORTHO05D003684 1.8e-10 71.2 54 68.5
ClCG05G013260 Citrullus lanatus HOM05D000825 ORTHO05D003684 1.8e-10 71.2 54 68.5
Manes.15G157200 Manihot esculenta HOM05D000825 ORTHO05D003684 2.3e-10 70.9 63 65.1
MSTRG.24075 Avicennia marina HOM05D000825 ORTHO05D003684 4.0e-10 70.1 53 71.7
CsaV3_3G027280 Cucumis sativus L. HOM05D000825 ORTHO05D003684 4.0e-10 70.1 53 67.9
Gohir.D09G034300 Gossypium hirsutum HOM05D000825 ORTHO05D003684 4.0e-10 70.1 53 67.9
Lj7A607G33 Lonicera japonica HOM05D000825 ORTHO05D003684 4.0e-10 70.1 52 71.2
MD09G1016200 Malus domestica HOM05D000825 ORTHO05D003684 4.0e-10 70.1 53 67.9
MD17G1016700 Malus domestica HOM05D000825 ORTHO05D003684 4.0e-10 70.1 53 67.9
Nn4g22416 Nelumbo nucifera HOM05D000825 ORTHO05D003684 4.0e-10 70.1 96 45.8
QL02p072697 Quercus lobata HOM05D000825 ORTHO05D003684 4.0e-10 70.1 53 71.7
Rhsim10G0010000 Rhododendron simsii HOM05D000825 ORTHO05D003684 4.0e-10 70.1 53 67.9
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 4.0e-10 70.1 53 67.9
Duzib187G1246 Durio zibethinus HOM05D000825 ORTHO05D003684 5.2e-10 69.7 53 66.0
Migut.H00018 Erythranthe guttata HOM05D000825 ORTHO05D003684 5.2e-10 69.7 119 41.2
HanXRQChr15g0474691 Helianthus annuus HOM05D000825 ORTHO05D003684 5.2e-10 69.7 65 64.6
MBI11_g21376_MAGBIO Magnolia biondii HOM05D000825 ORTHO05D003684 5.2e-10 69.7 53 69.8
Nitab4.5_0000040g0460 Nicotiana tabacum HOM05D000825 ORTHO05D003684 5.2e-10 69.7 52 69.2
Nitab4.5_0008789g0010 Nicotiana tabacum HOM05D000825 ORTHO05D003684 5.2e-10 69.7 52 69.2
Peaxi162Scf00080g00187 Petunia axillaris HOM05D000825 ORTHO05D003684 5.2e-10 69.7 52 71.2
Solyc02g068010.4 Solanum lycopersicum HOM05D000825 ORTHO05D003684 5.2e-10 69.7 52 69.2
Sopen02g017140 Solanum pennellii HOM05D000825 ORTHO05D003684 5.2e-10 69.7 52 69.2
PGSC0003DMG400006972 Solanum tuberosum HOM05D000825 ORTHO05D003684 5.2e-10 69.7 52 69.2
Thecc.04G029000 Theobroma cacao HOM05D000825 ORTHO05D003684 5.2e-10 69.7 53 67.9
Atru.chr6.2498 Acer truncatum HOM05D000825 ORTHO05D003684 6.8e-10 69.3 59 62.7
Cpa.g.c36007 Carica papaya HOM05D000825 ORTHO05D003684 6.8e-10 69.3 85 52.9
CiPaw.03G051400 Carya illinoinensis HOM05D000825 ORTHO05D003684 6.8e-10 69.3 53 67.9
DCAR_021760 Daucus carota HOM05D000825 ORTHO05D003684 6.8e-10 69.3 52 71.2
Lsat_1_v5_gn_4_185580 Lactuca sativa HOM05D000825 ORTHO05D003684 6.8e-10 69.3 52 71.2
Prupe.3G301200 Prunus persica HOM05D000825 ORTHO05D003684 6.8e-10 69.3 53 66.0
TPR.G6761 Trifolium pratense HOM05D000825 ORTHO05D003684 6.8e-10 69.3 60 61.7
COL.COLO4_23618 Corchorus olitorius HOM05D000825 ORTHO05D003684 8.9e-10 68.9 53 64.2
Duzib147G0600 Durio zibethinus HOM05D000825 ORTHO05D003684 8.9e-10 68.9 53 62.3
PSO063G4496 Papaver somniferum HOM05D000825 ORTHO05D003684 8.9e-10 68.9 53 67.9
PSO782G3128 Papaver somniferum HOM05D000825 ORTHO05D003684 8.9e-10 68.9 53 67.9
RcHm_v2.0_Chr2g0174621 Rosa chinensis HOM05D000825 ORTHO05D003684 8.9e-10 68.9 53 67.9
Actinidia05933 Actinidia chinensis HOM05D000825 ORTHO05D003684 1.2e-09 68.6 53 66.0
CAN.G1315.5 Capsicum annuum HOM05D000825 ORTHO05D003684 1.2e-09 68.6 52 67.3
CiPaw.05G115700 Carya illinoinensis HOM05D000825 ORTHO05D003684 1.2e-09 68.6 114 43.0
Ca_25816_v3 Cicer arietinum L. HOM05D000825 ORTHO05D003684 1.2e-09 68.6 53 66.0
Oeu039929.1 Olea europaea HOM05D000825 ORTHO05D003684 1.2e-09 68.6 53 66.0
Oeu058764.1 Olea europaea HOM05D000825 ORTHO05D003684 1.2e-09 68.6 53 66.0
Potri.001G335100 Populus trichocarpa HOM05D000825 ORTHO05D003684 1.2e-09 68.6 54 68.5
SalBow1G2383 Salvia bowleyana HOM05D000825 ORTHO05D003684 1.2e-09 68.6 116 40.5
unitig_52.g17647 Utricularia gibba HOM05D000825 ORTHO05D003684 1.2e-09 68.6 54 70.4
Aqoxy5G03524 Aquilegia oxysepala HOM05D000825 ORTHO05D003684 1.5e-09 68.2 53 66.0
Dinv25685 Davidia involucrata HOM05D000825 ORTHO05D003684 1.5e-09 68.2 59 64.4
VMungo1383G1969 Vigna mungo HOM05D000825 ORTHO05D003684 1.5e-09 68.2 66 59.1
MELO3C014858.2 Cucumis melo HOM05D000825 ORTHO05D003684 2.0e-09 67.8 53 66.0
FAN02G3782 Fragaria x ananassa HOM05D000825 ORTHO05D003684 2.0e-09 67.8 53 67.9
FAN05G0249 Fragaria x ananassa HOM05D000825 ORTHO05D003684 2.0e-09 67.8 53 67.9
FAN09G3672 Fragaria x ananassa HOM05D000336 ORTHO05D002301 2.0e-09 67.8 53 67.9
Lsat_1_v5_gn_0_8520 Lactuca sativa HOM05D000825 ORTHO05D003684 2.0e-09 67.8 52 67.3
MD13G1111900 Malus domestica HOM05D000825 ORTHO05D003684 2.0e-09 67.8 54 64.8
Oeu050428.1 Olea europaea HOM05D000825 ORTHO05D003684 2.0e-09 67.8 95 47.4
Phvul.008G150000 Phaseolus vulgaris HOM05D000825 ORTHO05D003684 2.0e-09 67.8 66 59.1
PGR142G0599 Punica granatum HOM05D000825 ORTHO05D003684 2.0e-09 67.8 53 62.3
SGA_v2.0_scaffold135G34960 Striga asiatica HOM05D000825 ORTHO05D003684 2.0e-09 67.8 53 66.0
Cpa.g.sc43.9 Carica papaya HOM05D000825 ORTHO05D003684 2.6e-09 67.4 53 66.0
Duzib268G0015 Durio zibethinus HOM05D000825 ORTHO05D003684 2.6e-09 67.4 53 64.2
FvH4_6g52910 Fragaria vesca HOM05D000825 ORTHO05D003684 2.6e-09 67.4 53 67.9
Glyma.19G084400 Glycine max HOM05D000825 ORTHO05D003684 2.6e-09 67.4 118 40.7
Lj6C821G11 Lonicera japonica HOM05D000825 ORTHO05D003684 2.6e-09 67.4 52 67.3
Sc03g0006850 Simmondsia chinensis HOM05D000825 ORTHO05D003684 2.6e-09 67.4 53 67.9
Sc03g0006950 Simmondsia chinensis HOM05D000825 ORTHO05D003684 2.6e-09 67.4 53 67.9
TAR374G0756 Trochodendron aralioides HOM05D000825 ORTHO05D003684 2.6e-09 67.4 53 64.2
Aa31LG11G15070 Aethionema arabicum HOM05D000825 ORTHO05D003684 3.4e-09 67.0 54 68.5
BcaB08g36972 Brassica carinata HOM05D000825 ORTHO05D003684 3.4e-09 67.0 70 58.6
BcaNung03168 Brassica carinata HOM05D000825 ORTHO05D003684 3.4e-09 67.0 65 58.5
Cc07_g00510 Coffea canephora HOM05D000825 ORTHO05D003684 3.4e-09 67.0 59 62.7
HanXRQChr09g0255951 Helianthus annuus HOM05D000825 ORTHO05D003684 3.4e-09 67.0 52 69.2
Thecc.02G274000 Theobroma cacao HOM05D000825 ORTHO05D003684 3.4e-09 67.0 66 56.1
TAR629G1558 Trochodendron aralioides HOM05D000825 ORTHO05D003684 3.4e-09 67.0 53 67.9
GSVIVG01001837001 Vitis vinifera HOM05D000825 ORTHO05D003684 3.4e-09 67.0 59 61.0
BcaC04g19048 Brassica carinata HOM05D000825 ORTHO05D003684 4.4e-09 66.6 65 58.5
Ah.06g195630 Amaranthus hybridus HOM05D000825 ORTHO05D003684 5.8e-09 66.2 52 63.5
CSS0018664 Camellia sinensis var. sinensis HOM05D000825 ORTHO05D003684 7.6e-09 65.9 52 67.3
CSS0041807 Camellia sinensis var. sinensis HOM05D000825 ORTHO05D003684 7.6e-09 65.9 52 67.3
CARHR199050 Cardamine hirsuta HOM05D000825 ORTHO05D003684 7.6e-09 65.9 70 58.6
Medtr8g088170 Medicago truncatula HOM05D000825 ORTHO05D003684 7.6e-09 65.9 60 58.3
Prupe.1G233600 Prunus persica HOM05D000825 ORTHO05D003684 7.6e-09 65.9 53 64.2
A10p24210 Brassica napus HOM05D000825 ORTHO05D003684 9.9e-09 65.5 70 55.7
C09p62900 Brassica napus HOM05D000825 ORTHO05D003684 9.9e-09 65.5 70 55.7
BolC9t59127H Brassica oleracea HOM05D000825 ORTHO05D003684 9.9e-09 65.5 70 55.7
BraA10t44486Z Brassica rapa HOM05D000825 ORTHO05D003684 9.9e-09 65.5 70 55.7
Carub.0006s1248 Capsella rubella HOM05D000825 ORTHO05D003684 9.9e-09 65.5 70 58.6
Duzib268G1792 Durio zibethinus HOM05D000825 ORTHO05D003684 9.9e-09 65.5 52 65.4
FAN22G1830 Fragaria x ananassa HOM05D000825 ORTHO05D003462 9.9e-09 65.5 53 62.3
RcHm_v2.0_Chr4g0431211 Rosa chinensis HOM05D000825 ORTHO05D003684 9.9e-09 65.5 53 62.3
TWI36G0924 Tripterygium wilfordii HOM05D000825 ORTHO05D003684 9.9e-09 65.5 53 64.2
CANSAT01G0340 Cannabis sativa HOM05D000825 ORTHO05D003684 1.3e-08 65.1 53 64.2
Eucgr.B03459 Eucalyptus grandis HOM05D000825 ORTHO05D003684 1.3e-08 65.1 53 66.0
Thhalv10014472m.g Eutrema salsugineum HOM05D000825 ORTHO05D003684 1.3e-08 65.1 70 57.1
Hma1.2p1_0279F.1_g112350 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 1.3e-08 65.1 52 65.4
Nn3g16547 Nelumbo nucifera HOM05D000825 ORTHO05D003684 1.3e-08 65.1 53 62.3
Sp6g29750 Schrenkiella parvula HOM05D000825 ORTHO05D003684 1.3e-08 65.1 69 59.4
AL6G24965 Arabidopsis lyrata HOM05D000825 ORTHO05D003684 1.7e-08 64.7 69 59.4
FAN07G2829 Fragaria x ananassa HOM05D000825 ORTHO05D003462 1.7e-08 64.7 53 62.3
FAN17G0127 Fragaria x ananassa HOM05D000825 ORTHO05D003462 1.7e-08 64.7 53 62.3
Solyc05g014550.1 Solanum lycopersicum HOM05D000825 ORTHO05D003684 1.7e-08 64.7 53 64.2
Sopen05g009600 Solanum pennellii HOM05D000825 ORTHO05D003684 1.7e-08 64.7 53 64.2
QL03p054799 Quercus lobata HOM05D000825 ORTHO05D003684 2.2e-08 64.3 53 60.4
Haze_14823 Corylus avellana HOM05D000825 ORTHO05D003684 2.9e-08 63.9 60 58.3
Glyma.16G062400 Glycine max HOM05D000825 ORTHO05D003684 2.9e-08 63.9 60 60.0
Gohir.A04G138600 Gossypium hirsutum HOM05D000825 ORTHO05D003684 2.9e-08 63.9 53 60.4
AT5G14285 Arabidopsis thaliana HOM05D000825 ORTHO05D003684 3.7e-08 63.5 69 58.0
Dinv14797 Davidia involucrata HOM05D000825 ORTHO05D003462 3.7e-08 63.5 66 53.0
Gorai.012G174800 Gossypium raimondii HOM05D000825 ORTHO05D003684 3.7e-08 63.5 53 60.4
PGR083G2872 Punica granatum HOM05D000825 ORTHO05D003684 3.7e-08 63.5 54 68.5
GSVIVG01010353001 Vitis vinifera HOM05D000825 ORTHO05D003684 3.7e-08 63.5 53 62.3
MD16G1111500 Malus domestica HOM05D000825 ORTHO05D003684 4.9e-08 63.2 66 54.5
CARHR146940 Cardamine hirsuta HOM05D000825 ORTHO05D003684 6.4e-08 62.8 54 61.1
Cfa007265 Carpinus fangiana HOM05D000825 ORTHO05D003684 6.4e-08 62.8 60 58.3
Manes.12G015100 Manihot esculenta HOM05D000825 ORTHO05D003684 6.4e-08 62.8 53 58.5
PGSC0003DMG400017458 Solanum tuberosum HOM05D000825 ORTHO05D003684 6.4e-08 62.8 53 62.3
Duzib251G0166 Durio zibethinus HOM05D000825 ORTHO05D003684 8.4e-08 62.4 55 58.2
TAR622G1438 Trochodendron aralioides HOM05D000825 ORTHO05D003684 8.4e-08 62.4 66 54.5
FvH4_4g24350 Fragaria vesca HOM05D000825 ORTHO05D003684 1.1e-07 62.0 53 58.5
FAN12G2056 Fragaria x ananassa HOM05D000825 ORTHO05D003684 1.1e-07 62.0 53 58.5
Gohir.D04G181500 Gossypium hirsutum HOM05D000825 ORTHO05D003684 1.1e-07 62.0 53 58.5
Aa31LG2G6380 Aethionema arabicum HOM05D000825 ORTHO05D003684 1.4e-07 61.6 53 64.2
Cc11_g16570 Coffea canephora HOM05D000825 ORTHO05D003684 1.4e-07 61.6 53 60.4
Manes.12G015000 Manihot esculenta HOM05D000825 ORTHO05D003684 1.4e-07 61.6 52 57.7
Nitab4.5_0000581g0090 Nicotiana tabacum HOM05D000825 ORTHO05D003684 1.4e-07 61.6 53 62.3
A06p42340 Brassica napus HOM05D000825 ORTHO05D003684 1.9e-07 61.2 53 62.3
BraA06t27149Z Brassica rapa HOM05D000825 ORTHO05D003684 1.9e-07 61.2 53 62.3
BcaC06g31101 Brassica carinata HOM05D000825 ORTHO05D003684 2.4e-07 60.8 53 62.3
BcaC06g33935 Brassica carinata HOM05D000825 ORTHO05D003684 2.4e-07 60.8 53 62.3
C07p35000 Brassica napus HOM05D000825 ORTHO05D003684 2.4e-07 60.8 53 62.3
Lsat_1_v5_gn_8_150181 Lactuca sativa HOM05D000825 ORTHO05D003684 2.4e-07 60.8 52 61.5
Actinidia25758 Actinidia chinensis HOM05D000825 ORTHO05D003684 3.2e-07 60.5 65 52.3
EL10Ac6g13435 Beta vulgaris HOM05D000825 ORTHO05D003684 3.2e-07 60.5 52 63.5
BcaC03g13503 Brassica carinata HOM05D000825 ORTHO05D003684 3.2e-07 60.5 54 64.8
BolC7t44032H Brassica oleracea HOM05D000825 ORTHO05D003684 3.2e-07 60.5 109 41.3
Thhalv10004816m.g Eutrema salsugineum HOM05D000825 ORTHO05D003684 3.2e-07 60.5 54 59.3
Rhsim12G0105600 Rhododendron simsii HOM05D000825 ORTHO05D003684 3.2e-07 60.5 70 54.3
Sp2g15180 Schrenkiella parvula HOM05D000825 ORTHO05D003684 3.2e-07 60.5 53 60.4
MSTRG.525 Avicennia marina HOM05D000825 ORTHO05D003684 5.4e-07 59.7 53 54.7
AL5G14610 Arabidopsis lyrata HOM05D000825 ORTHO05D003684 7.1e-07 59.3 53 58.5
Carub.0005s0381 Capsella rubella HOM05D000825 ORTHO05D003684 7.1e-07 59.3 53 58.5
Lj1g0005346 Lotus japonicus HOM05D000825 ORTHO05D003684 7.1e-07 59.3 67 55.2
TWI36G0189 Tripterygium wilfordii HOM05D000825 ORTHO05D003684 7.1e-07 59.3 53 56.6
DCAR_026481 Daucus carota HOM05D000825 ORTHO05D003684 1.2e-06 58.5 65 50.8
PGR102G1594 Punica granatum HOM05D000825 ORTHO05D003684 1.2e-06 58.5 54 57.4
AT3G25950 Arabidopsis thaliana HOM05D000825 ORTHO05D003684 1.6e-06 58.2 53 56.6
Ciclev10032558m.g Citrus clementina HOM05D000825 ORTHO05D003684 1.6e-06 58.2 53 52.8
Potri.008G178800 Populus trichocarpa HOM05D000825 ORTHO05D003684 1.6e-06 58.2 66 47.0
Sc04g0009930 Simmondsia chinensis HOM05D000825 ORTHO05D003684 2.7e-06 57.4 54 61.1
Atru.chr11.2242 Acer truncatum HOM05D000825 ORTHO05D003684 3.5e-06 57.0 53 52.8
Atru.chr11.2257 Acer truncatum HOM05D000825 ORTHO05D003684 3.5e-06 57.0 53 52.8
ATR0743G122 Amborella trichopoda HOM05D000825 ORTHO05D003684 6.0e-06 56.2 53 54.7
Sed0006825 Sechium edule HOM05D000825 ORTHO05D003684 6.0e-06 56.2 54 57.4
CSS0004617 Camellia sinensis var. sinensis HOM05D000825 ORTHO05D003684 7.8e-06 55.8 73 53.4


User provided reference genes

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