Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb029410 Zea mays HOM05D003086 ORTHO05D003347 1.9e-43 178.7 88 100.0
Os10g0502100 Oryza sativa ssp. japonica HOM05D003086 ORTHO05D003347 8.7e-28 126.7 82 74.4
Zm00001eb044240 Zea mays HOM05D028875 ORTHO05D003347 4.0e-25 117.9 86 72.1
Zm00001eb268340 Zea mays HOM05D028875 ORTHO05D003347 3.0e-20 101.7 76 68.4
Zm00001eb329750 Zea mays HOM05D028875 ORTHO05D003347 5.7e-19 97.4 74 70.3
Zm00001eb051570 Zea mays HOM05D028875 ORTHO05D003347 4.1e-17 91.3 74 66.2
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 8.2e-10 67.0 61 52.5
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 8.2e-10 67.0 55 61.8
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 8.2e-10 67.0 55 61.8
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 1.4e-09 66.2 60 55.0
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 3.1e-09 65.1 61 50.8
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 3.1e-09 65.1 62 53.2
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 3.1e-09 65.1 59 57.6
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 4.1e-09 64.7 65 50.8
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 6.9e-09 63.9 55 60.0
ECA233G0233 Erigeron canadensis HOM05D003086 ORTHO05D003347 6.9e-09 63.9 62 50.0
HanXRQChr08g0225161 Helianthus annuus HOM05D003086 ORTHO05D003347 6.9e-09 63.9 60 51.7
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 6.9e-09 63.9 60 53.3
HPP92_013003 Vanilla planifolia HOM05D003086 ORTHO05D003347 6.9e-09 63.9 71 49.3
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 9.1e-09 63.5 80 46.2
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 1.2e-08 63.2 62 53.2
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 1.5e-08 62.8 54 59.3
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 1.5e-08 62.8 67 47.8
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 2.0e-08 62.4 61 50.8
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 2.0e-08 62.4 83 44.6
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 2.0e-08 62.4 87 43.7
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 2.0e-08 62.4 65 49.2
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 2.6e-08 62.0 62 51.6
CSS0003230 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 3.4e-08 61.6 60 55.0
CSS0024306 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 3.4e-08 61.6 60 55.0
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 3.4e-08 61.6 51 56.9
Sabra14G0073900 Salix brachista HOM05D003086 ORTHO05D003347 3.4e-08 61.6 56 57.1
SalBow4G0310 Salvia bowleyana HOM05D003086 ORTHO05D003347 3.4e-08 61.6 82 46.3
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 3.4e-08 61.6 62 50.0
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 4.5e-08 61.2 84 44.0
CAN.G481.40 Capsicum annuum HOM05D003086 ORTHO05D003347 5.9e-08 60.8 56 55.4
Gohir.A08G111400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 5.9e-08 60.8 62 50.0
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 5.9e-08 60.8 63 50.8
Potri.001G087200 Populus trichocarpa HOM05D003086 ORTHO05D003347 7.7e-08 60.5 60 51.7
Rhsim07G0217700 Rhododendron simsii HOM05D007433 ORTHO05D009199 7.7e-08 60.5 53 62.3
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 1.3e-07 59.7 70 47.1
HanXRQChr16g0524361 Helianthus annuus HOM05D003086 ORTHO05D003347 1.3e-07 59.7 59 49.2
Nitab4.5_0000015g0220 Nicotiana tabacum HOM05D003086 ORTHO05D003347 1.3e-07 59.7 77 49.4
Thecc.03G304300 Theobroma cacao HOM05D003086 ORTHO05D003347 1.3e-07 59.7 62 48.4
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 1.3e-07 59.7 62 50.0
MD01G1224000 Malus domestica HOM05D003086 ORTHO05D003347 1.7e-07 59.3 73 46.6
Sopen03g022700 Solanum pennellii HOM05D003086 ORTHO05D003347 1.7e-07 59.3 72 47.2
PGSC0003DMG400018543 Solanum tuberosum HOM05D003086 ORTHO05D003347 1.7e-07 59.3 72 47.2
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 2.2e-07 58.9 57 57.9
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 2.2e-07 58.9 64 50.0
Gohir.D08G124400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.2e-07 58.9 62 48.4
Gorai.004G131100 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.2e-07 58.9 62 48.4
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 2.2e-07 58.9 67 44.8
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 2.2e-07 58.9 58 53.4
Solyc06g052060.3 Solanum lycopersicum HOM05D003086 ORTHO05D003347 2.2e-07 58.9 77 45.5
Sopen06g018110 Solanum pennellii HOM05D003086 ORTHO05D003347 2.2e-07 58.9 77 45.5
PGSC0003DMG400019607 Solanum tuberosum HOM05D003086 ORTHO05D003347 2.2e-07 58.9 77 45.5
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 2.2e-07 58.9 60 50.0
TAR628G1336 Trochodendron aralioides HOM05D007433 ORTHO05D009199 2.2e-07 58.9 51 56.9
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 2.9e-07 58.5 58 51.7
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 2.9e-07 58.5 78 42.3
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 3.8e-07 58.2 63 49.2
CDE02G0840 Ceratophyllum demersum HOM05D003086 ORTHO05D003347 3.8e-07 58.2 47 61.7
Prupe.5G126200 Prunus persica HOM05D003086 ORTHO05D003347 3.8e-07 58.2 58 51.7
QL12p038428 Quercus lobata HOM05D007433 ORTHO05D009199 3.8e-07 58.2 53 54.7
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 3.8e-07 58.2 62 48.4
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 3.8e-07 58.2 62 51.6
Atru.chr9.1962 Acer truncatum HOM05D003086 ORTHO05D003347 5.0e-07 57.8 62 48.4
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 5.0e-07 57.8 57 56.1
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 5.0e-07 57.8 66 47.0
vmacro04593 Vaccinium macrocarpon HOM05D007433 ORTHO05D009199 5.0e-07 57.8 53 58.5
Dinv44935 Davidia involucrata HOM05D007433 ORTHO05D009199 6.5e-07 57.4 53 56.6
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 6.5e-07 57.4 60 50.0
Dinv39208 Davidia involucrata HOM05D007433 ORTHO05D009199 8.5e-07 57.0 62 51.6
Gohir.A09G186001 Gossypium hirsutum HOM05D003086 ORTHO05D003347 8.5e-07 57.0 68 42.6
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 8.5e-07 57.0 62 48.4
Gohir.D09G180500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 8.5e-07 57.0 68 42.6
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 8.5e-07 57.0 62 48.4
Gorai.006G202500 Gossypium raimondii HOM05D003086 ORTHO05D003347 8.5e-07 57.0 68 42.6
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 8.5e-07 57.0 62 48.4
Manes.05G183000 Manihot esculenta HOM05D007433 ORTHO05D009199 8.5e-07 57.0 54 57.4
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 8.5e-07 57.0 56 51.8
CiPaw.08G051700 Carya illinoinensis HOM05D007433 ORTHO05D009199 1.1e-06 56.6 53 52.8
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 1.1e-06 56.6 84 41.7
Manes.18G048800 Manihot esculenta HOM05D007433 ORTHO05D009199 1.1e-06 56.6 62 51.6
Actinidia29630 Actinidia chinensis HOM05D001492 ORTHO05D001400 1.4e-06 56.2 53 52.8
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 1.4e-06 56.2 56 50.0
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.4e-06 56.2 58 51.7
MD06G1113400 Malus domestica HOM05D003086 ORTHO05D003347 1.4e-06 56.2 63 46.0
Sed0005155 Sechium edule HOM05D007433 ORTHO05D009199 1.4e-06 56.2 56 53.6
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 1.4e-06 56.2 62 50.0
Cfa015968 Carpinus fangiana HOM05D003086 ORTHO05D003347 1.9e-06 55.8 57 50.9
Potri.014G013600 Populus trichocarpa HOM05D007433 ORTHO05D009199 1.9e-06 55.8 62 51.6
Sabra01G0063400 Salix brachista HOM05D003086 ORTHO05D003347 1.9e-06 55.8 61 47.5
Atru.chr13.862 Acer truncatum HOM05D007433 ORTHO05D009199 2.5e-06 55.5 41 61.0
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 2.5e-06 55.5 58 51.7
ClCG05G026590 Citrullus lanatus HOM05D007433 ORTHO05D009199 2.5e-06 55.5 51 54.9
FAN10G1862 Fragaria x ananassa HOM05D037066 ORTHO05D003347 2.5e-06 55.5 76 44.7
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 2.5e-06 55.5 57 52.6
FAN10G1789 Fragaria x ananassa HOM05D037066 ORTHO05D003347 3.2e-06 55.1 76 43.4
Manes.02G005600 Manihot esculenta HOM05D003086 ORTHO05D003347 3.2e-06 55.1 57 50.9
Peaxi162Scf00740g00215 Petunia axillaris HOM05D003086 ORTHO05D003347 3.2e-06 55.1 57 49.1
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 3.2e-06 55.1 62 48.4
MELO3C016834.2 Cucumis melo HOM05D007433 ORTHO05D009199 4.2e-06 54.7 56 51.8
CsaV3_4G035230 Cucumis sativus L. HOM05D007433 ORTHO05D009199 4.2e-06 54.7 56 51.8
Nitab4.5_0002780g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 4.2e-06 54.7 56 51.8
Nitab4.5_0007100g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 4.2e-06 54.7 56 51.8
Peaxi162Scf00340g00061 Petunia axillaris HOM05D007433 ORTHO05D009199 4.2e-06 54.7 53 50.9
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 4.2e-06 54.7 55 49.1
COL.COLO4_16806 Corchorus olitorius HOM05D003086 ORTHO05D003347 5.5e-06 54.3 75 44.0
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 5.5e-06 54.3 65 47.7
HPP92_014802 Vanilla planifolia HOM05D003086 ORTHO05D003347 5.5e-06 54.3 60 51.7
Actinidia18664 Actinidia chinensis HOM05D003086 ORTHO05D003347 7.2e-06 53.9 47 57.4
Aqoxy7G00049 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 7.2e-06 53.9 62 45.2
Cc02_g01250 Coffea canephora HOM05D003086 ORTHO05D003347 7.2e-06 53.9 54 51.9
CiPaw.07G172700 Carya illinoinensis HOM05D007433 ORTHO05D009199 9.4e-06 53.5 62 45.2
Cc10_g07560 Coffea canephora HOM05D007433 ORTHO05D009199 9.4e-06 53.5 62 45.2
Gohir.A02G080400 Gossypium hirsutum HOM05D007433 ORTHO05D009199 9.4e-06 53.5 53 52.8
Gohir.D02G088300 Gossypium hirsutum HOM05D007433 ORTHO05D009199 9.4e-06 53.5 53 52.8
Gorai.004G151100 Gossypium raimondii HOM05D003086 ORTHO05D003347 9.4e-06 53.5 58 50.0
Gorai.005G098900 Gossypium raimondii HOM05D007433 ORTHO05D009199 9.4e-06 53.5 53 52.8
RcHm_v2.0_Chr1g0381731 Rosa chinensis HOM05D003086 ORTHO05D003347 9.4e-06 53.5 54 53.7
Thecc.03G202500 Theobroma cacao HOM05D003086 ORTHO05D003347 9.4e-06 53.5 72 45.8
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 9.4e-06 53.5 55 54.5


User provided reference genes

Program Settings