Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 2.3e-176 622.1 305 100.0
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 1.0e-139 500.4 283 86.9
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 2.9e-102 375.9 268 68.3
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 2.4e-101 372.9 274 66.1
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 2.4e-101 372.9 274 66.1
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 3.2e-101 372.5 267 68.2
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 5.4e-101 371.7 246 70.7
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 7.0e-101 371.3 261 68.6
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 1.6e-100 370.2 269 67.7
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 6.0e-100 368.2 257 66.9
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 7.8e-100 367.9 256 68.0
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 1.3e-99 367.1 259 68.7
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 1.3e-99 367.1 244 70.5
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 2.3e-99 366.3 252 70.6
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 3.0e-99 365.9 219 76.7
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 6.6e-99 364.8 247 69.6
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 6.6e-99 364.8 251 69.3
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 8.6e-99 364.4 247 69.6
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 1.1e-98 364.0 240 72.1
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 1.1e-98 364.0 281 64.8
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 1.5e-98 363.6 246 68.7
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 1.9e-98 363.2 246 70.3
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 1.9e-98 363.2 245 70.6
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 3.3e-98 362.5 263 66.9
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 3.3e-98 362.5 234 70.9
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 3.3e-98 362.5 261 67.0
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 4.3e-98 362.1 244 69.3
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 4.3e-98 362.1 269 64.3
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 5.6e-98 361.7 236 70.3
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 5.6e-98 361.7 260 65.0
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 7.3e-98 361.3 245 69.8
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 9.5e-98 360.9 288 62.5
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 1.6e-97 360.1 269 63.9
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 1.6e-97 360.1 236 69.5
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 1.6e-97 360.1 268 63.8
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 1.6e-97 360.1 280 63.2
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 1.6e-97 360.1 281 61.9
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 2.1e-97 359.8 247 67.6
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 2.1e-97 359.8 243 71.2
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 2.8e-97 359.4 251 67.7
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 2.8e-97 359.4 243 68.3
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 3.6e-97 359.0 236 71.6
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 4.7e-97 358.6 294 62.2
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 4.7e-97 358.6 275 64.4
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 6.2e-97 358.2 236 72.0
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 8.1e-97 357.8 251 66.9
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 1.1e-96 357.5 245 69.8
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 1.1e-96 357.5 263 65.8
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 1.1e-96 357.5 258 65.9
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 1.1e-96 357.5 235 70.2
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 1.1e-96 357.5 230 71.3
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 1.8e-96 356.7 245 69.8
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 1.8e-96 356.7 245 68.2
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 1.8e-96 356.7 245 67.3
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 2.3e-96 356.3 246 66.7
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 3.1e-96 355.9 235 71.5
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 3.1e-96 355.9 245 66.9
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 3.1e-96 355.9 295 59.3
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 4.0e-96 355.5 284 61.6
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 4.0e-96 355.5 244 70.5
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 4.0e-96 355.5 276 63.0
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 4.0e-96 355.5 282 61.7
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 5.2e-96 355.1 235 69.8
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 6.8e-96 354.8 241 69.3
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.2e-95 354.0 242 67.4
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 2.0e-95 353.2 238 68.9
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 2.6e-95 352.8 242 66.5
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 4.4e-95 352.1 240 67.9
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 5.8e-95 351.7 240 68.8
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 5.8e-95 351.7 236 67.8
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 7.5e-95 351.3 241 68.9
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 1.3e-94 350.5 280 60.4
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.3e-94 350.5 246 65.9
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 1.3e-94 350.5 288 59.0
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 1.7e-94 350.1 232 69.0
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 2.2e-94 349.7 236 69.1
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 2.2e-94 349.7 245 65.3
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 2.2e-94 349.7 245 66.1
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 2.2e-94 349.7 273 61.2
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 4.9e-94 348.6 261 63.2
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 4.9e-94 348.6 298 56.4
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 6.4e-94 348.2 229 67.7
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 6.4e-94 348.2 276 60.1
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 5.4e-93 345.1 245 69.0
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 7.1e-93 344.7 246 64.2
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 7.1e-93 344.7 243 63.0
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 7.1e-93 344.7 266 64.3
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 9.2e-93 344.4 246 63.4
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 1.6e-92 343.6 265 61.9
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 2.1e-92 343.2 236 65.7
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 3.5e-92 342.4 240 65.8
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 6.0e-92 341.7 310 56.1
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 6.0e-92 341.7 241 66.4
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 1.0e-91 340.9 229 69.4
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 1.0e-91 340.9 270 59.3
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 1.3e-91 340.5 275 59.6
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 1.7e-91 340.1 234 67.9
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 5.1e-91 338.6 259 64.5
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 5.1e-91 338.6 234 67.1
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 6.6e-91 338.2 297 56.2
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 1.5e-90 337.0 243 63.0
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 2.5e-90 336.3 250 61.6
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 2.5e-90 336.3 294 57.1
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 3.3e-90 335.9 294 57.1
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 4.3e-90 335.5 282 57.4
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 2.1e-89 333.2 221 69.2
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 5.2e-88 328.6 254 62.2
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 6.8e-88 328.2 261 58.6
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 1.2e-87 327.4 304 53.3
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 5.4e-85 318.5 215 67.9
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 1.0e-83 314.3 243 62.1
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 6.6e-83 311.6 274 57.7
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 3.3e-82 309.3 277 56.7
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 3.3e-82 309.3 261 57.9
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 1.6e-81 307.0 211 69.2
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 8.1e-81 304.7 357 44.8
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 2.6e-79 299.7 211 64.5
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 2.2e-78 296.6 201 69.2
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 2.4e-77 293.1 246 61.8
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 7.3e-74 281.6 222 59.9
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.1e-69 267.7 167 70.1
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 3.2e-69 266.2 238 55.5
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 1.3e-67 260.8 245 57.1
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 1.8e-67 260.4 217 57.6
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 1.1e-66 257.7 160 75.6
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 1.6e-65 253.8 196 65.3
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 2.2e-62 243.4 251 49.0
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 9.3e-61 238.0 197 58.4
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 1.2e-52 211.1 128 75.0
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 1.0e-51 208.0 214 49.5
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 5.1e-51 205.7 216 46.8
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 4.1e-48 196.1 147 66.0
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.0e-43 181.4 191 52.4
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 1.3e-43 181.0 147 63.3
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 2.8e-41 173.3 100 77.0
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 4.8e-41 172.6 147 61.9
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 1.0e-35 154.8 147 54.4
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 2.3e-35 153.7 119 58.8
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 3.9e-35 152.9 127 57.5
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 1.9e-29 134.0 89 66.3
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 5.2e-19 99.4 66 66.7
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 2.0e-18 97.4 68 67.6
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 2.0e-18 97.4 68 67.6
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 1.1e-16 91.7 72 59.7
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 3.2e-13 80.1 59 57.6
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 4.2e-13 79.7 44 75.0
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 9.4e-13 78.6 44 75.0
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 1.6e-12 77.8 43 76.7
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 2.1e-12 77.4 40 82.5
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 5.2e-11 72.8 35 85.7
CBR_g29560 Chara braunii HOM05D002780 ORTHO05D005882 6.5e-06 55.8 120 28.3


User provided reference genes

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