Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 1.8e-238 828.9 445 100.0
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 5.7e-200 701.0 408 89.7
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 1.0e-140 504.2 426 63.6
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 6.6e-140 501.5 431 62.9
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 1.6e-138 496.9 429 62.9
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 2.1e-138 496.5 429 64.6
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 1.4e-137 493.8 410 64.1
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 2.0e-136 490.0 430 62.3
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 5.8e-136 488.4 442 60.4
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 6.4e-135 485.0 436 61.5
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 6.4e-135 485.0 429 62.7
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.7e-133 479.6 431 60.8
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 2.7e-133 479.6 431 62.2
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 3.5e-133 479.2 431 62.2
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 4.6e-133 478.8 430 60.9
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 4.6e-133 478.8 445 59.8
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 6.0e-133 478.4 407 61.9
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 2.3e-132 476.5 442 59.0
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 5.1e-132 475.3 437 60.0
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 6.6e-132 474.9 430 60.2
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 8.6e-132 474.6 434 60.6
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 8.6e-132 474.6 430 61.4
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 1.5e-131 473.8 408 63.0
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 1.6e-130 470.3 403 61.0
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 2.1e-130 469.9 433 60.5
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 8.1e-130 468.0 417 62.1
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 1.1e-129 467.6 430 60.0
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 1.1e-129 467.6 430 60.2
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 1.4e-129 467.2 426 60.1
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.8e-129 466.8 425 60.2
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 4.0e-129 465.7 424 59.7
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 4.0e-129 465.7 424 59.7
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 5.2e-129 465.3 431 60.3
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 1.5e-128 463.8 436 59.6
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 2.0e-128 463.4 431 60.1
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 2.0e-128 463.4 430 58.4
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 2.6e-128 463.0 413 62.2
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 3.4e-128 462.6 430 59.3
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 3.4e-128 462.6 431 60.1
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 4.4e-128 462.2 436 58.9
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 5.8e-128 461.8 436 58.5
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 9.9e-128 461.1 430 58.1
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 9.9e-128 461.1 433 58.2
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 1.7e-127 460.3 446 59.2
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 1.7e-127 460.3 446 59.9
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 2.9e-127 459.5 430 59.1
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 4.9e-127 458.8 428 59.8
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 4.9e-127 458.8 430 59.1
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 1.9e-126 456.8 428 59.8
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 1.9e-126 456.8 442 58.8
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 2.4e-126 456.4 429 59.0
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 2.4e-126 456.4 430 59.5
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 3.2e-126 456.1 430 59.1
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 5.4e-126 455.3 427 58.5
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 1.2e-125 454.1 430 59.3
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 1.2e-125 454.1 432 57.9
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 2.1e-125 453.4 409 58.2
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 3.5e-125 452.6 429 58.5
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 3.5e-125 452.6 419 59.7
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 4.6e-125 452.2 430 58.6
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 4.6e-125 452.2 429 58.5
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 6.0e-125 451.8 430 58.4
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 6.0e-125 451.8 406 60.6
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 1.3e-124 450.7 429 59.0
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 1.7e-124 450.3 428 58.6
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 5.1e-124 448.7 413 57.6
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 1.5e-123 447.2 412 59.5
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 1.5e-123 447.2 428 57.9
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 2.5e-123 446.4 406 59.9
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 1.2e-122 444.1 431 58.5
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.2e-122 444.1 463 56.4
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 2.8e-122 443.0 431 58.7
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 4.7e-122 442.2 408 59.8
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 6.2e-122 441.8 435 56.3
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 1.8e-121 440.3 434 57.1
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 5.2e-121 438.7 440 56.8
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 5.2e-121 438.7 412 60.2
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 5.2e-121 438.7 408 59.1
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 6.8e-121 438.3 428 57.7
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.2e-120 437.6 408 59.3
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 3.4e-120 436.0 428 57.2
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 4.4e-120 435.6 429 56.9
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 4.4e-120 435.6 410 58.3
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 5.8e-120 435.3 429 57.3
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 9.9e-120 434.5 445 56.4
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 1.3e-119 434.1 429 57.1
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 1.7e-119 433.7 411 58.9
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 6.4e-119 431.8 411 57.7
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 6.4e-119 431.8 429 56.9
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 8.4e-119 431.4 429 56.6
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 1.4e-118 430.6 430 57.0
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 4.2e-118 429.1 433 56.6
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 4.2e-118 429.1 441 56.7
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 9.2e-118 427.9 507 49.9
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 1.2e-117 427.6 396 61.1
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 1.2e-117 427.6 368 61.7
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 2.1e-117 426.8 433 55.7
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 1.7e-116 423.7 437 55.6
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 1.7e-116 423.7 433 55.2
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 2.3e-116 423.3 435 55.4
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 3.9e-116 422.5 410 57.1
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 4.3e-115 419.1 429 57.8
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 7.3e-115 418.3 441 54.4
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 7.3e-115 418.3 436 53.7
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 1.3e-114 417.5 418 58.4
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 1.6e-114 417.2 474 53.0
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 4.8e-114 415.6 373 60.3
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 5.3e-113 412.1 433 54.0
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 5.3e-113 412.1 440 54.8
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 5.3e-113 412.1 420 56.4
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 6.9e-113 411.8 433 54.3
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 8.7e-108 394.8 429 52.4
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 2.5e-107 393.3 437 53.1
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 2.4e-105 386.7 435 51.5
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 7.6e-104 381.7 391 56.3
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 2.2e-103 380.2 428 52.1
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.3e-100 370.9 430 51.4
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 2.1e-98 363.6 432 51.4
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 4.2e-94 349.4 404 49.0
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 3.9e-92 342.8 310 61.9
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 3.3e-91 339.7 273 64.5
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 5.7e-91 339.0 430 50.5
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 2.1e-90 337.0 408 48.0
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 2.8e-90 336.7 511 45.8
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 1.2e-88 331.3 343 54.8
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 1.4e-86 324.3 447 46.1
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 1.9e-86 323.9 429 47.1
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 3.3e-83 313.2 309 57.0
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 7.4e-83 312.0 298 57.0
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 1.0e-79 301.6 378 50.5
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 4.4e-67 259.6 189 69.8
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 2.0e-64 250.8 245 57.1
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 2.3e-60 237.3 325 46.8
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 3.0e-60 236.9 197 65.5
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 4.8e-58 229.6 181 64.6
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 4.1e-57 226.5 196 62.2
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 3.0e-52 210.3 181 62.4
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.7e-50 204.5 425 37.2
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 2.2e-42 177.6 147 60.5
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.3e-39 168.3 158 60.1
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 5.0e-39 166.4 139 58.3
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.4e-33 148.3 145 58.6
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 1.2e-32 145.2 236 41.1
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 8.6e-31 139.0 120 66.7
Os12g0567000 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 7.0e-25 119.4 117 57.3
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 1.1e-20 105.5 81 64.2
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 2.3e-20 104.4 112 52.7
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 1.7e-18 98.2 465 25.4
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 2.1e-16 91.3 112 48.2
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.7e-16 90.9 104 51.0
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 4.6e-16 90.1 77 58.4
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 1.7e-10 71.6 219 27.9
TAR636G1555 Trochodendron aralioides HOM05D001886 ORTHO05D005666 4.1e-09 67.0 164 31.1
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 7.1e-09 66.2 219 26.9
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 2.7e-08 64.3 218 27.5
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 3.5e-08 63.9 192 27.6
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 4.6e-08 63.5 199 27.1
SMO197G0098 Selaginella moellendorffii HOM05D001886 ORTHO05D005666 4.6e-08 63.5 464 22.6
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 6.0e-08 63.2 218 23.9
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 7.8e-08 62.8 194 27.8
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.3e-07 62.0 193 28.5
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 2.3e-07 61.2 194 27.3
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.9e-06 58.2 171 25.7
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 3.3e-06 57.4 192 25.5


User provided reference genes

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