Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb028740 Zea mays HOM05D005747 ORTHO05D007159 3.3e-53 211.5 107 100.0
Zm00001eb136890 Zea mays HOM05D005747 ORTHO05D007159 2.0e-50 202.2 106 95.3
Os12g0566400 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 9.9e-50 199.9 107 93.5
Haze_20124 Corylus avellana HOM05D005747 ORTHO05D007159 7.1e-40 167.2 105 75.2
Haze_20552 Corylus avellana HOM05D005747 ORTHO05D007159 9.2e-40 166.8 105 74.3
Actinidia08777 Actinidia chinensis HOM05D005747 ORTHO05D007159 2.7e-39 165.2 105 73.3
Cfa020071 Carpinus fangiana HOM05D005747 ORTHO05D007159 4.6e-39 164.5 105 74.3
Actinidia28901 Actinidia chinensis HOM05D005747 ORTHO05D007159 1.0e-38 163.3 105 71.4
vmacro07288 Vaccinium macrocarpon HOM05D005747 ORTHO05D007159 2.3e-38 162.2 105 73.3
Manes.08G009800 Manihot esculenta HOM05D005747 ORTHO05D007159 5.1e-38 161.0 105 72.4
Hma1.2p1_0205F.1_g087080 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 6.6e-38 160.6 104 74.0
CSS0033757 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 1.5e-37 159.5 105 69.5
Rhsim03G0092400 Rhododendron simsii HOM05D005747 ORTHO05D007159 1.5e-37 159.5 105 72.4
Cc06_g04180 Coffea canephora HOM05D005747 ORTHO05D007159 5.6e-37 157.5 105 70.5
Migut.L01698 Erythranthe guttata HOM05D005747 ORTHO05D007159 9.6e-37 156.8 105 66.7
CSS0022084 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 1.2e-36 156.4 105 70.5
Aqoxy1G01163 Aquilegia oxysepala HOM05D005747 ORTHO05D007159 1.6e-36 156.0 105 71.4
GSVIVG01025728001 Vitis vinifera HOM05D005747 ORTHO05D007159 1.6e-36 156.0 105 72.4
MSTRG.19175 Avicennia marina HOM05D005747 ORTHO05D007159 6.2e-36 154.1 104 68.3
EL10Ac1g00026 Beta vulgaris HOM05D005747 ORTHO05D007159 6.2e-36 154.1 105 71.4
CSS0033637 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 6.2e-36 154.1 105 69.5
CANSAT80G0760 Cannabis sativa HOM05D005747 ORTHO05D007159 6.2e-36 154.1 105 70.5
Prupe.6G232700 Prunus persica HOM05D005747 ORTHO05D007159 1.1e-35 153.3 105 68.6
Glyma.19G183500 Glycine max HOM05D005747 ORTHO05D007159 1.4e-35 152.9 105 69.5
Glyma.13G143500 Glycine max HOM05D005747 ORTHO05D007159 1.8e-35 152.5 105 69.5
Lj5g0010104 Lotus japonicus HOM05D005747 ORTHO05D007159 1.8e-35 152.5 104 69.2
Atru.chr8.1820 Acer truncatum HOM05D005747 ORTHO05D007159 3.1e-35 151.8 105 67.6
Ciclev10013173m.g Citrus clementina HOM05D005747 ORTHO05D007159 3.1e-35 151.8 105 67.6
PGR004G0006 Punica granatum HOM05D005747 ORTHO05D007159 4.0e-35 151.4 105 71.4
TWI74G1168 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 4.0e-35 151.4 105 71.4
Nn7g38309 Nelumbo nucifera HOM05D005747 ORTHO05D007159 5.2e-35 151.0 105 69.5
TAR369G0407 Trochodendron aralioides HOM05D005747 ORTHO05D007159 5.2e-35 151.0 105 68.6
arahy.Tifrunner.gnm1.ann1.548B55 Arachis hypogaea HOM05D005747 ORTHO05D007159 6.9e-35 150.6 105 69.5
PSO063G6473 Papaver somniferum HOM05D005747 ORTHO05D007159 6.9e-35 150.6 105 66.7
PSO339G2391 Papaver somniferum HOM05D005747 ORTHO05D007159 6.9e-35 150.6 105 66.7
arahy.Tifrunner.gnm1.ann1.GC88CS Arachis hypogaea HOM05D005747 ORTHO05D007159 9.0e-35 150.2 105 68.6
Dinv37311 Davidia involucrata HOM05D005747 ORTHO05D007159 1.2e-34 149.8 105 70.5
arahy.Tifrunner.gnm1.ann1.47U1LD Arachis hypogaea HOM05D005747 ORTHO05D007159 1.5e-34 149.4 105 68.6
MD12G1113800 Malus domestica HOM05D005747 ORTHO05D007159 2.0e-34 149.1 105 67.6
TWI77G0618 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 2.0e-34 149.1 105 71.4
arahy.Tifrunner.gnm1.ann1.W5J3RK Arachis hypogaea HOM05D005747 ORTHO05D007159 2.6e-34 148.7 105 68.6
Glyma.10G057000 Glycine max HOM05D005747 ORTHO05D007159 2.6e-34 148.7 105 66.7
Solyc09g008140.3 Solanum lycopersicum HOM05D005747 ORTHO05D007159 2.6e-34 148.7 105 64.8
Sopen09g002940 Solanum pennellii HOM05D005747 ORTHO05D007159 2.6e-34 148.7 105 64.8
Thecc.05G065200 Theobroma cacao HOM05D005747 ORTHO05D007159 2.6e-34 148.7 105 66.7
QL07p043606 Quercus lobata HOM05D005747 ORTHO05D007159 4.4e-34 147.9 105 67.6
CAN.G900.40 Capsicum annuum HOM05D005747 ORTHO05D007159 5.8e-34 147.5 105 62.9
MELO3C009353.2 Cucumis melo HOM05D005747 ORTHO05D007159 5.8e-34 147.5 105 67.6
RcHm_v2.0_Chr3g0470141 Rosa chinensis HOM05D005747 ORTHO05D007159 5.8e-34 147.5 103 68.0
TAR633G0139 Trochodendron aralioides HOM05D005747 ORTHO05D007159 5.8e-34 147.5 105 67.6
MD04G1094200 Malus domestica HOM05D005747 ORTHO05D007159 7.6e-34 147.1 105 66.7
SGA_v2.0_scaffold75G24844 Striga asiatica HOM05D005747 ORTHO05D007159 7.6e-34 147.1 97 70.1
CsaV3_3G035950 Cucumis sativus L. HOM05D005747 ORTHO05D007159 9.9e-34 146.7 105 67.6
Eucgr.A01688 Eucalyptus grandis HOM05D005747 ORTHO05D007159 9.9e-34 146.7 105 66.7
SalBow5G0179 Salvia bowleyana HOM05D005747 ORTHO05D007159 9.9e-34 146.7 105 64.8
SalBow5G1412 Salvia bowleyana HOM05D005747 ORTHO05D007159 9.9e-34 146.7 105 64.8
Sc02g0001670 Simmondsia chinensis HOM05D005747 ORTHO05D007159 1.3e-33 146.4 107 63.6
FAN05G2010 Fragaria x ananassa HOM05D005747 ORTHO05D007159 1.7e-33 146.0 103 66.0
Medtr7g101880 Medicago truncatula HOM05D005747 ORTHO05D007159 1.7e-33 146.0 99 67.7
THA.LOC104826911 Tarenaya hassleriana HOM05D005747 ORTHO05D007159 1.7e-33 146.0 105 65.7
VMungo1383G0680 Vigna mungo HOM05D005747 ORTHO05D007159 1.7e-33 146.0 105 65.7
Thhalv10015093m.g Eutrema salsugineum HOM05D005747 ORTHO05D007159 2.2e-33 145.6 103 66.0
ClCG10G020160 Citrullus lanatus HOM05D005747 ORTHO05D007159 2.9e-33 145.2 105 66.7
FvH4_6g16280 Fragaria vesca HOM05D005747 ORTHO05D007159 2.9e-33 145.2 103 65.0
FAN02G1695 Fragaria x ananassa HOM05D005747 ORTHO05D007159 2.9e-33 145.2 105 63.8
FAN14G5754 Fragaria x ananassa HOM05D005747 ORTHO05D007159 2.9e-33 145.2 103 65.0
Peaxi162Scf00701g00029 Petunia axillaris HOM05D005747 ORTHO05D007159 2.9e-33 145.2 105 63.8
Psat0s2933g0080 Pisum sativum HOM05D005747 ORTHO05D007159 2.9e-33 145.2 105 63.8
Gohir.A09G147500 Gossypium hirsutum HOM05D005747 ORTHO05D007159 3.8e-33 144.8 105 67.6
TPR.G9369 Trifolium pratense HOM05D005747 ORTHO05D007159 4.9e-33 144.4 105 65.7
Duzib093G2107 Durio zibethinus HOM05D005747 ORTHO05D007159 6.4e-33 144.1 105 64.8
Lalb_Chr20g0112621 Lupinus albus HOM05D005747 ORTHO05D007159 8.4e-33 143.7 105 64.8
AL6G12680 Arabidopsis lyrata HOM05D005747 ORTHO05D007159 1.1e-32 143.3 103 65.0
Carub.0006s0216 Capsella rubella HOM05D005747 ORTHO05D007159 1.4e-32 142.9 103 65.0
Duzib128G1360 Durio zibethinus HOM05D005747 ORTHO05D007159 1.4e-32 142.9 105 64.8
Aa31LG3G2310 Aethionema arabicum HOM05D005747 ORTHO05D007159 1.9e-32 142.5 105 63.8
Gohir.D09G143100 Gossypium hirsutum HOM05D005747 ORTHO05D007159 1.9e-32 142.5 105 66.7
Gorai.006G164600 Gossypium raimondii HOM05D005747 ORTHO05D007159 1.9e-32 142.5 105 66.7
FAN09G1333 Fragaria x ananassa HOM05D005747 ORTHO05D007159 2.4e-32 142.1 103 64.1
Potri.006G125300 Populus trichocarpa HOM05D005747 ORTHO05D007159 2.4e-32 142.1 103 62.1
Sed0019850 Sechium edule HOM05D005747 ORTHO05D007159 3.2e-32 141.7 105 63.8
Phvul.001G178800 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 4.2e-32 141.4 105 62.9
Psat6g073040 Pisum sativum HOM05D005747 ORTHO05D007159 4.2e-32 141.4 105 64.8
Sp6g39390 Schrenkiella parvula HOM05D005747 ORTHO05D007159 4.2e-32 141.4 103 65.0
AT5G03345 Arabidopsis thaliana HOM05D005747 ORTHO05D007159 7.1e-32 140.6 103 64.1
Manes.09G066900 Manihot esculenta HOM05D005747 ORTHO05D007159 9.3e-32 140.2 104 63.5
TPR.G25697 Trifolium pratense HOM05D005747 ORTHO05D007159 1.2e-31 139.8 97 67.0
HPP92_009808 Vanilla planifolia HOM05D005747 ORTHO05D007159 1.2e-31 139.8 92 73.9
Ca_11494_v3 Cicer arietinum L. HOM05D005747 ORTHO05D007159 2.1e-31 139.0 105 65.7
Lalb_Chr02g0155891 Lupinus albus HOM05D005747 ORTHO05D007159 3.5e-31 138.3 104 62.5
unitig_578.g16384 Utricularia gibba HOM05D005747 ORTHO05D007159 3.5e-31 138.3 100 64.0
Ah.05g172440 Amaranthus hybridus HOM05D005747 ORTHO05D007159 4.6e-31 137.9 105 64.8
C02p00970 Brassica napus HOM05D001005 ORTHO05D000836 7.8e-31 137.1 103 62.1
CARHR210000 Cardamine hirsuta HOM05D005747 ORTHO05D007159 1.0e-30 136.7 103 62.1
Medtr1g063370 Medicago truncatula HOM05D005747 ORTHO05D007159 1.3e-30 136.3 105 61.9
Phvul.007G149300 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 1.3e-30 136.3 104 64.4
BcaC03g13014 Brassica carinata HOM05D005747 ORTHO05D007159 2.3e-30 135.6 103 61.2
Nitab4.5_0000578g0140 Nicotiana tabacum HOM05D005747 ORTHO05D007159 2.5e-29 132.1 105 61.0
Lsat_1_v5_gn_6_25181 Lactuca sativa HOM05D005747 ORTHO05D007159 3.3e-29 131.7 102 60.8
Nitab4.5_0002632g0020 Nicotiana tabacum HOM05D005747 ORTHO05D007159 4.3e-29 131.3 105 60.0
PGSC0003DMG400003860 Solanum tuberosum HOM05D005747 ORTHO05D007159 9.6e-29 130.2 133 50.4
HanXRQChr13g0401071 Helianthus annuus HOM05D005747 ORTHO05D007159 3.6e-28 128.3 105 57.1
SEGI_15519 Sequoiadendron giganteum HOM05D005747 ORTHO05D007159 3.6e-28 128.3 93 62.4
Potri.016G091900 Populus trichocarpa HOM05D005747 ORTHO05D007159 4.8e-28 127.9 103 55.3
ECA233G4120 Erigeron canadensis HOM05D005747 ORTHO05D007159 8.1e-28 127.1 102 58.8
CDE06G0870 Ceratophyllum demersum HOM05D005747 ORTHO05D007159 6.9e-27 124.0 94 59.6
Glyma.03G182900 Glycine max HOM05D005747 ORTHO05D007159 1.2e-26 123.2 134 51.5
Mapoly0011s0153 Marchantia polymorpha HOM05D005747 ORTHO05D007159 1.2e-26 123.2 103 54.4
HanXRQChr02g0051611 Helianthus annuus HOM05D005747 ORTHO05D007159 2.9e-25 118.6 104 52.9
SMO137G0056 Selaginella moellendorffii HOM05D005747 ORTHO05D007159 2.9e-25 118.6 100 56.0
Gorai.006G061900 Gossypium raimondii HOM05D005747 ORTHO05D007159 6.4e-25 117.5 107 58.9
Oeu053677.1 Olea europaea HOM05D005747 ORTHO05D007159 4.6e-23 111.3 78 67.9
Hma1.2p1_0205F.1_g087090 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 7.9e-23 110.5 76 69.7
AagrBONN_evm.TU.Sc2ySwM_362.1648 Anthoceros agrestis HOM05D005747 ORTHO05D007159 3.9e-22 108.2 81 61.7
Lj2A1109T71 Lonicera japonica HOM05D005747 ORTHO05D007159 6.7e-22 107.5 75 66.7
Pp3c6_8930 Physcomitrium patens HOM05D005747 ORTHO05D007159 1.5e-21 106.3 91 52.7
Hund20347 Selenicereus undatus HOM05D005747 ORTHO05D007159 2.5e-21 105.5 77 64.9
DCAR_020822 Daucus carota HOM05D005747 ORTHO05D007159 5.6e-21 104.4 76 65.8
CSS0043170 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 1.3e-20 103.2 70 70.0
ATR0104G002 Amborella trichopoda HOM05D005747 ORTHO05D007159 2.1e-20 102.4 80 62.5
Oeu045224.1 Olea europaea HOM05D005747 ORTHO05D007159 3.7e-20 101.7 86 59.3
CSS0041044 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 1.1e-19 100.1 70 68.6
Pp3c5_16080 Physcomitrium patens HOM05D005747 ORTHO05D007159 1.1e-19 100.1 92 48.9
Sed0003931 Sechium edule HOM05D005747 ORTHO05D007159 2.6e-18 95.5 66 66.7
AUR62004704 Chenopodium quinoa HOM05D005747 ORTHO05D007159 5.8e-18 94.4 105 49.5
AUR62023620 Chenopodium quinoa HOM05D005747 ORTHO05D007159 7.6e-18 94.0 113 49.6
CiPaw.09G219400 Carya illinoinensis HOM05D005747 ORTHO05D007159 2.2e-17 92.4 97 53.6
Sabra16G0097500 Salix brachista HOM05D005747 ORTHO05D007159 3.2e-16 88.6 74 52.7
Os11g0568633 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 1.8e-14 82.8 42 92.9
Dinv35784 Davidia involucrata HOM05D005747 ORTHO05D007159 7.4e-13 77.4 50 76.0
Lalb_Chr02g0156001 Lupinus albus HOM05D005747 ORTHO05D007159 2.5e-08 62.4 82 46.3
MCO03G507 Micromonas commoda HOM05D005747 ORTHO05D007159 3.2e-08 62.0 88 37.5
COL.COLO4_26972 Corchorus olitorius HOM05D005747 ORTHO05D007159 1.6e-07 59.7 45 60.0
Cre03.g183050 Chlamydomonas reinhardtii HOM05D005747 ORTHO05D007159 3.5e-07 58.5 95 36.8
Lalb_Chr25g0289001 Lupinus albus HOM05D005747 ORTHO05D007159 5.1e-06 54.7 52 53.8


User provided reference genes

Program Settings